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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
QKI responsiveness of 48 RBFOX2 dependent ASEs
Transcript map
: APBB2 JPB_SKOV_Ctrl Lipo_72h
Exon
Length: 137
Transcript: APBB2.aApr07
Length: 137
Transcript: APBB2.aApr07
Exon
Length: 156
Transcript: APBB2.aApr07
Length: 156
Transcript: APBB2.aApr07
Exon
Length: 112
Transcript: APBB2.aApr07
Length: 112
Transcript: APBB2.aApr07
Exon
Length: 98
Transcript: APBB2.aApr07
Length: 98
Transcript: APBB2.aApr07
Exon
Length: 69
Transcript: APBB2.aApr07
Length: 69
Transcript: APBB2.aApr07
Exon
Length: 816
Transcript: APBB2.aApr07
Length: 816
Transcript: APBB2.aApr07
Exon
Length: 209
Transcript: APBB2.aApr07
Length: 209
Transcript: APBB2.aApr07
Exon
Length: 63
Transcript: APBB2.aApr07
Length: 63
Transcript: APBB2.aApr07
Exon
Length: 86
Transcript: APBB2.aApr07
Length: 86
Transcript: APBB2.aApr07
Exon
Length: 61
Transcript: APBB2.aApr07
Length: 61
Transcript: APBB2.aApr07
Exon
Length: 147
Transcript: APBB2.aApr07
Length: 147
Transcript: APBB2.aApr07
Exon
Length: 128
Transcript: APBB2.aApr07
Length: 128
Transcript: APBB2.aApr07
Exon
Length: 115
Transcript: APBB2.aApr07
Length: 115
Transcript: APBB2.aApr07
Exon
Length: 88
Transcript: APBB2.aApr07
Length: 88
Transcript: APBB2.aApr07
Exon
Length: 84
Transcript: APBB2.aApr07
Length: 84
Transcript: APBB2.aApr07
Exon
Length: 116
Transcript: APBB2.aApr07
Length: 116
Transcript: APBB2.aApr07
Exon
Length: 180
Transcript: APBB2.aApr07
Length: 180
Transcript: APBB2.aApr07
Exon
Length: 938
Transcript: APBB2.aApr07
Length: 938
Transcript: APBB2.aApr07
Intron
Length: 71262
Transcript: APBB2.aApr07
Length: 71262
Transcript: APBB2.aApr07
Intron
Length: 42236
Transcript: APBB2.aApr07
Length: 42236
Transcript: APBB2.aApr07
Intron
Length: 34965
Transcript: APBB2.aApr07
Length: 34965
Transcript: APBB2.aApr07
Intron
Length: 32271
Transcript: APBB2.aApr07
Length: 32271
Transcript: APBB2.aApr07
Intron
Length: 18837
Transcript: APBB2.aApr07
Length: 18837
Transcript: APBB2.aApr07
Intron
Length: 68509
Transcript: APBB2.aApr07
Length: 68509
Transcript: APBB2.aApr07
Intron
Length: 9725
Transcript: APBB2.aApr07
Length: 9725
Transcript: APBB2.aApr07
Intron
Length: 377
Transcript: APBB2.aApr07
Length: 377
Transcript: APBB2.aApr07
Intron
Length: 97
Transcript: APBB2.aApr07
Length: 97
Transcript: APBB2.aApr07
Intron
Length: 41044
Transcript: APBB2.aApr07
Length: 41044
Transcript: APBB2.aApr07
Intron
Length: 2773
Transcript: APBB2.aApr07
Length: 2773
Transcript: APBB2.aApr07
Intron
Length: 59786
Transcript: APBB2.aApr07
Length: 59786
Transcript: APBB2.aApr07
Intron
Length: 3243
Transcript: APBB2.aApr07
Length: 3243
Transcript: APBB2.aApr07
Intron
Length: 1161
Transcript: APBB2.aApr07
Length: 1161
Transcript: APBB2.aApr07
Intron
Length: 2127
Transcript: APBB2.aApr07
Length: 2127
Transcript: APBB2.aApr07
Intron
Length: 1593
Transcript: APBB2.aApr07
Length: 1593
Transcript: APBB2.aApr07
Intron
Length: 5611
Transcript: APBB2.aApr07
Length: 5611
Transcript: APBB2.aApr07
Reaction
Expected peak: 169
45.1M
FOX.APBB2.F1
FOX.APBB2.R1
Expected peak: 169
45.1M
FOX.APBB2.F1
FOX.APBB2.R1
Exon
Length: 216
Transcript: APBB2.bApr07
Length: 216
Transcript: APBB2.bApr07
Exon
Length: 156
Transcript: APBB2.bApr07
Length: 156
Transcript: APBB2.bApr07
Exon
Length: 112
Transcript: APBB2.bApr07
Length: 112
Transcript: APBB2.bApr07
Exon
Length: 98
Transcript: APBB2.bApr07
Length: 98
Transcript: APBB2.bApr07
Exon
Length: 816
Transcript: APBB2.bApr07
Length: 816
Transcript: APBB2.bApr07
Exon
Length: 206
Transcript: APBB2.bApr07
Length: 206
Transcript: APBB2.bApr07
Exon
Length: 63
Transcript: APBB2.bApr07
Length: 63
Transcript: APBB2.bApr07
Exon
Length: 86
Transcript: APBB2.bApr07
Length: 86
Transcript: APBB2.bApr07
Exon
Length: 61
Transcript: APBB2.bApr07
Length: 61
Transcript: APBB2.bApr07
Exon
Length: 147
Transcript: APBB2.bApr07
Length: 147
Transcript: APBB2.bApr07
Exon
Length: 128
Transcript: APBB2.bApr07
Length: 128
Transcript: APBB2.bApr07
Exon
Length: 115
Transcript: APBB2.bApr07
Length: 115
Transcript: APBB2.bApr07
Exon
Length: 88
Transcript: APBB2.bApr07
Length: 88
Transcript: APBB2.bApr07
Exon
Length: 84
Transcript: APBB2.bApr07
Length: 84
Transcript: APBB2.bApr07
Exon
Length: 116
Transcript: APBB2.bApr07
Length: 116
Transcript: APBB2.bApr07
Exon
Length: 180
Transcript: APBB2.bApr07
Length: 180
Transcript: APBB2.bApr07
Exon
Length: 6968
Transcript: APBB2.bApr07
Length: 6968
Transcript: APBB2.bApr07
Intron
Length: 71262
Transcript: APBB2.bApr07
Length: 71262
Transcript: APBB2.bApr07
Intron
Length: 42236
Transcript: APBB2.bApr07
Length: 42236
Transcript: APBB2.bApr07
Intron
Length: 34965
Transcript: APBB2.bApr07
Length: 34965
Transcript: APBB2.bApr07
Intron
Length: 51177
Transcript: APBB2.bApr07
Length: 51177
Transcript: APBB2.bApr07
Intron
Length: 68512
Transcript: APBB2.bApr07
Length: 68512
Transcript: APBB2.bApr07
Intron
Length: 9725
Transcript: APBB2.bApr07
Length: 9725
Transcript: APBB2.bApr07
Intron
Length: 377
Transcript: APBB2.bApr07
Length: 377
Transcript: APBB2.bApr07
Intron
Length: 97
Transcript: APBB2.bApr07
Length: 97
Transcript: APBB2.bApr07
Intron
Length: 41044
Transcript: APBB2.bApr07
Length: 41044
Transcript: APBB2.bApr07
Intron
Length: 2773
Transcript: APBB2.bApr07
Length: 2773
Transcript: APBB2.bApr07
Intron
Length: 59786
Transcript: APBB2.bApr07
Length: 59786
Transcript: APBB2.bApr07
Intron
Length: 3243
Transcript: APBB2.bApr07
Length: 3243
Transcript: APBB2.bApr07
Intron
Length: 1161
Transcript: APBB2.bApr07
Length: 1161
Transcript: APBB2.bApr07
Intron
Length: 2127
Transcript: APBB2.bApr07
Length: 2127
Transcript: APBB2.bApr07
Intron
Length: 1593
Transcript: APBB2.bApr07
Length: 1593
Transcript: APBB2.bApr07
Intron
Length: 5611
Transcript: APBB2.bApr07
Length: 5611
Transcript: APBB2.bApr07
Reaction
Expected peak: 169
45.1M
FOX.APBB2.F1
FOX.APBB2.R1
Expected peak: 169
45.1M
FOX.APBB2.F1
FOX.APBB2.R1
Exon
Length: 67
Transcript: APBB2.cApr07
Length: 67
Transcript: APBB2.cApr07
Exon
Length: 156
Transcript: APBB2.cApr07
Length: 156
Transcript: APBB2.cApr07
Exon
Length: 112
Transcript: APBB2.cApr07
Length: 112
Transcript: APBB2.cApr07
Exon
Length: 98
Transcript: APBB2.cApr07
Length: 98
Transcript: APBB2.cApr07
Exon
Length: 69
Transcript: APBB2.cApr07
Length: 69
Transcript: APBB2.cApr07
Exon
Length: 816
Transcript: APBB2.cApr07
Length: 816
Transcript: APBB2.cApr07
Exon
Length: 206
Transcript: APBB2.cApr07
Length: 206
Transcript: APBB2.cApr07
Exon
Length: 86
Transcript: APBB2.cApr07
Length: 86
Transcript: APBB2.cApr07
Exon
Length: 61
Transcript: APBB2.cApr07
Length: 61
Transcript: APBB2.cApr07
Exon
Length: 147
Transcript: APBB2.cApr07
Length: 147
Transcript: APBB2.cApr07
Exon
Length: 128
Transcript: APBB2.cApr07
Length: 128
Transcript: APBB2.cApr07
Exon
Length: 115
Transcript: APBB2.cApr07
Length: 115
Transcript: APBB2.cApr07
Exon
Length: 88
Transcript: APBB2.cApr07
Length: 88
Transcript: APBB2.cApr07
Exon
Length: 81
Transcript: APBB2.cApr07
Length: 81
Transcript: APBB2.cApr07
Exon
Length: 116
Transcript: APBB2.cApr07
Length: 116
Transcript: APBB2.cApr07
Exon
Length: 180
Transcript: APBB2.cApr07
Length: 180
Transcript: APBB2.cApr07
Exon
Length: 2954
Transcript: APBB2.cApr07
Length: 2954
Transcript: APBB2.cApr07
Intron
Length: 71262
Transcript: APBB2.cApr07
Length: 71262
Transcript: APBB2.cApr07
Intron
Length: 42236
Transcript: APBB2.cApr07
Length: 42236
Transcript: APBB2.cApr07
Intron
Length: 34965
Transcript: APBB2.cApr07
Length: 34965
Transcript: APBB2.cApr07
Intron
Length: 32271
Transcript: APBB2.cApr07
Length: 32271
Transcript: APBB2.cApr07
Intron
Length: 18837
Transcript: APBB2.cApr07
Length: 18837
Transcript: APBB2.cApr07
Intron
Length: 68512
Transcript: APBB2.cApr07
Length: 68512
Transcript: APBB2.cApr07
Intron
Length: 10165
Transcript: APBB2.cApr07
Length: 10165
Transcript: APBB2.cApr07
Intron
Length: 97
Transcript: APBB2.cApr07
Length: 97
Transcript: APBB2.cApr07
Intron
Length: 41044
Transcript: APBB2.cApr07
Length: 41044
Transcript: APBB2.cApr07
Intron
Length: 2773
Transcript: APBB2.cApr07
Length: 2773
Transcript: APBB2.cApr07
Intron
Length: 59786
Transcript: APBB2.cApr07
Length: 59786
Transcript: APBB2.cApr07
Intron
Length: 3243
Transcript: APBB2.cApr07
Length: 3243
Transcript: APBB2.cApr07
Intron
Length: 1164
Transcript: APBB2.cApr07
Length: 1164
Transcript: APBB2.cApr07
Intron
Length: 2127
Transcript: APBB2.cApr07
Length: 2127
Transcript: APBB2.cApr07
Intron
Length: 1593
Transcript: APBB2.cApr07
Length: 1593
Transcript: APBB2.cApr07
Intron
Length: 5611
Transcript: APBB2.cApr07
Length: 5611
Transcript: APBB2.cApr07
Reaction
Expected peak: 106
6.9M
FOX.APBB2.F1
FOX.APBB2.R1
Expected peak: 106
6.9M
FOX.APBB2.F1
FOX.APBB2.R1
Exon
Length: 294
Transcript: APBB2.dApr07
Length: 294
Transcript: APBB2.dApr07
Exon
Length: 209
Transcript: APBB2.dApr07
Length: 209
Transcript: APBB2.dApr07
Exon
Length: 86
Transcript: APBB2.dApr07
Length: 86
Transcript: APBB2.dApr07
Exon
Length: 61
Transcript: APBB2.dApr07
Length: 61
Transcript: APBB2.dApr07
Exon
Length: 147
Transcript: APBB2.dApr07
Length: 147
Transcript: APBB2.dApr07
Exon
Length: 128
Transcript: APBB2.dApr07
Length: 128
Transcript: APBB2.dApr07
Exon
Length: 115
Transcript: APBB2.dApr07
Length: 115
Transcript: APBB2.dApr07
Exon
Length: 88
Transcript: APBB2.dApr07
Length: 88
Transcript: APBB2.dApr07
Exon
Length: 40
Transcript: APBB2.dApr07
Length: 40
Transcript: APBB2.dApr07
Intron
Length: 68509
Transcript: APBB2.dApr07
Length: 68509
Transcript: APBB2.dApr07
Intron
Length: 10165
Transcript: APBB2.dApr07
Length: 10165
Transcript: APBB2.dApr07
Intron
Length: 97
Transcript: APBB2.dApr07
Length: 97
Transcript: APBB2.dApr07
Intron
Length: 41044
Transcript: APBB2.dApr07
Length: 41044
Transcript: APBB2.dApr07
Intron
Length: 2773
Transcript: APBB2.dApr07
Length: 2773
Transcript: APBB2.dApr07
Intron
Length: 59786
Transcript: APBB2.dApr07
Length: 59786
Transcript: APBB2.dApr07
Intron
Length: 3243
Transcript: APBB2.dApr07
Length: 3243
Transcript: APBB2.dApr07
Intron
Length: 1161
Transcript: APBB2.dApr07
Length: 1161
Transcript: APBB2.dApr07
Reaction
Expected peak: 106
6.9M
FOX.APBB2.F1
FOX.APBB2.R1
Expected peak: 106
6.9M
FOX.APBB2.F1
FOX.APBB2.R1
Exon
Length: 161
Transcript: APBB2.eApr07
Length: 161
Transcript: APBB2.eApr07
Exon
Length: 115
Transcript: APBB2.eApr07
Length: 115
Transcript: APBB2.eApr07
Exon
Length: 88
Transcript: APBB2.eApr07
Length: 88
Transcript: APBB2.eApr07
Exon
Length: 84
Transcript: APBB2.eApr07
Length: 84
Transcript: APBB2.eApr07
Exon
Length: 116
Transcript: APBB2.eApr07
Length: 116
Transcript: APBB2.eApr07
Exon
Length: 180
Transcript: APBB2.eApr07
Length: 180
Transcript: APBB2.eApr07
Exon
Length: 927
Transcript: APBB2.eApr07
Length: 927
Transcript: APBB2.eApr07
Intron
Length: 26407
Transcript: APBB2.eApr07
Length: 26407
Transcript: APBB2.eApr07
Intron
Length: 3243
Transcript: APBB2.eApr07
Length: 3243
Transcript: APBB2.eApr07
Intron
Length: 1161
Transcript: APBB2.eApr07
Length: 1161
Transcript: APBB2.eApr07
Intron
Length: 2127
Transcript: APBB2.eApr07
Length: 2127
Transcript: APBB2.eApr07
Intron
Length: 1593
Transcript: APBB2.eApr07
Length: 1593
Transcript: APBB2.eApr07
Intron
Length: 5611
Transcript: APBB2.eApr07
Length: 5611
Transcript: APBB2.eApr07
Exon
Length: 57
Transcript: APBB2.fApr07
Length: 57
Transcript: APBB2.fApr07
Exon
Length: 209
Transcript: APBB2.fApr07
Length: 209
Transcript: APBB2.fApr07
Exon
Length: 86
Transcript: APBB2.fApr07
Length: 86
Transcript: APBB2.fApr07
Exon
Length: 61
Transcript: APBB2.fApr07
Length: 61
Transcript: APBB2.fApr07
Exon
Length: 147
Transcript: APBB2.fApr07
Length: 147
Transcript: APBB2.fApr07
Exon
Length: 128
Transcript: APBB2.fApr07
Length: 128
Transcript: APBB2.fApr07
Exon
Length: 226
Transcript: APBB2.fApr07
Length: 226
Transcript: APBB2.fApr07
Intron
Length: 41199
Transcript: APBB2.fApr07
Length: 41199
Transcript: APBB2.fApr07
Intron
Length: 10165
Transcript: APBB2.fApr07
Length: 10165
Transcript: APBB2.fApr07
Intron
Length: 97
Transcript: APBB2.fApr07
Length: 97
Transcript: APBB2.fApr07
Intron
Length: 41044
Transcript: APBB2.fApr07
Length: 41044
Transcript: APBB2.fApr07
Intron
Length: 2773
Transcript: APBB2.fApr07
Length: 2773
Transcript: APBB2.fApr07
Intron
Length: 21184
Transcript: APBB2.fApr07
Length: 21184
Transcript: APBB2.fApr07
Reaction
Expected peak: 106
6.9M
FOX.APBB2.F1
FOX.APBB2.R1
Expected peak: 106
6.9M
FOX.APBB2.F1
FOX.APBB2.R1
Exon
Length: 57
Transcript: APBB2.gApr07
Length: 57
Transcript: APBB2.gApr07
Exon
Length: 88
Transcript: APBB2.gApr07
Length: 88
Transcript: APBB2.gApr07
Exon
Length: 84
Transcript: APBB2.gApr07
Length: 84
Transcript: APBB2.gApr07
Exon
Length: 116
Transcript: APBB2.gApr07
Length: 116
Transcript: APBB2.gApr07
Exon
Length: 180
Transcript: APBB2.gApr07
Length: 180
Transcript: APBB2.gApr07
Exon
Length: 175
Transcript: APBB2.gApr07
Length: 175
Transcript: APBB2.gApr07
Intron
Length: 3238
Transcript: APBB2.gApr07
Length: 3238
Transcript: APBB2.gApr07
Intron
Length: 1161
Transcript: APBB2.gApr07
Length: 1161
Transcript: APBB2.gApr07
Intron
Length: 2127
Transcript: APBB2.gApr07
Length: 2127
Transcript: APBB2.gApr07
Intron
Length: 1593
Transcript: APBB2.gApr07
Length: 1593
Transcript: APBB2.gApr07
Intron
Length: 5611
Transcript: APBB2.gApr07
Length: 5611
Transcript: APBB2.gApr07
Exon
Length: 693
Transcript: APBB2.hApr07-unspliced
Length: 693
Transcript: APBB2.hApr07-unspliced
Exon
Length: 886
Transcript: APBB2.iApr07-unspliced
Length: 886
Transcript: APBB2.iApr07-unspliced
Exon
Length: 672
Transcript: APBB2.jApr07
Length: 672
Transcript: APBB2.jApr07
Exon
Length: 263
Transcript: APBB2.jApr07
Length: 263
Transcript: APBB2.jApr07
Intron
Length: 5611
Transcript: APBB2.jApr07
Length: 5611
Transcript: APBB2.jApr07
Exon
Length: 1268
Transcript: APBB2.kApr07-unspliced
Length: 1268
Transcript: APBB2.kApr07-unspliced
Exon
Length: 90
Transcript: APBB2.lApr07
Length: 90
Transcript: APBB2.lApr07
Exon
Length: 353
Transcript: APBB2.lApr07
Length: 353
Transcript: APBB2.lApr07
Intron
Length: 20259
Transcript: APBB2.lApr07
Length: 20259
Transcript: APBB2.lApr07
Exon
Length: 211
Transcript: APBB2.oApr07
Length: 211
Transcript: APBB2.oApr07
Exon
Length: 156
Transcript: APBB2.oApr07
Length: 156
Transcript: APBB2.oApr07
Exon
Length: 112
Transcript: APBB2.oApr07
Length: 112
Transcript: APBB2.oApr07
Exon
Length: 69
Transcript: APBB2.oApr07
Length: 69
Transcript: APBB2.oApr07
Exon
Length: 520
Transcript: APBB2.oApr07
Length: 520
Transcript: APBB2.oApr07
Intron
Length: 71262
Transcript: APBB2.oApr07
Length: 71262
Transcript: APBB2.oApr07
Intron
Length: 42236
Transcript: APBB2.oApr07
Length: 42236
Transcript: APBB2.oApr07
Intron
Length: 67334
Transcript: APBB2.oApr07
Length: 67334
Transcript: APBB2.oApr07
Intron
Length: 18837
Transcript: APBB2.oApr07
Length: 18837
Transcript: APBB2.oApr07
Exon
Length: 112
Transcript: APBB2.pApr07
Length: 112
Transcript: APBB2.pApr07
Exon
Length: 156
Transcript: APBB2.pApr07
Length: 156
Transcript: APBB2.pApr07
Exon
Length: 117
Transcript: APBB2.pApr07
Length: 117
Transcript: APBB2.pApr07
Exon
Length: 112
Transcript: APBB2.pApr07
Length: 112
Transcript: APBB2.pApr07
Exon
Length: 98
Transcript: APBB2.pApr07
Length: 98
Transcript: APBB2.pApr07
Exon
Length: 69
Transcript: APBB2.pApr07
Length: 69
Transcript: APBB2.pApr07
Exon
Length: 182
Transcript: APBB2.pApr07
Length: 182
Transcript: APBB2.pApr07
Intron
Length: 71262
Transcript: APBB2.pApr07
Length: 71262
Transcript: APBB2.pApr07
Intron
Length: 24781
Transcript: APBB2.pApr07
Length: 24781
Transcript: APBB2.pApr07
Intron
Length: 17338
Transcript: APBB2.pApr07
Length: 17338
Transcript: APBB2.pApr07
Intron
Length: 34965
Transcript: APBB2.pApr07
Length: 34965
Transcript: APBB2.pApr07
Intron
Length: 32271
Transcript: APBB2.pApr07
Length: 32271
Transcript: APBB2.pApr07
Intron
Length: 18837
Transcript: APBB2.pApr07
Length: 18837
Transcript: APBB2.pApr07
Exon
Length: 84
Transcript: APBB2.qApr07
Length: 84
Transcript: APBB2.qApr07
Exon
Length: 156
Transcript: APBB2.qApr07
Length: 156
Transcript: APBB2.qApr07
Exon
Length: 112
Transcript: APBB2.qApr07
Length: 112
Transcript: APBB2.qApr07
Exon
Length: 98
Transcript: APBB2.qApr07
Length: 98
Transcript: APBB2.qApr07
Exon
Length: 69
Transcript: APBB2.qApr07
Length: 69
Transcript: APBB2.qApr07
Exon
Length: 55
Transcript: APBB2.qApr07
Length: 55
Transcript: APBB2.qApr07
Intron
Length: 71262
Transcript: APBB2.qApr07
Length: 71262
Transcript: APBB2.qApr07
Intron
Length: 42236
Transcript: APBB2.qApr07
Length: 42236
Transcript: APBB2.qApr07
Intron
Length: 34965
Transcript: APBB2.qApr07
Length: 34965
Transcript: APBB2.qApr07
Intron
Length: 32271
Transcript: APBB2.qApr07
Length: 32271
Transcript: APBB2.qApr07
Intron
Length: 3248
Transcript: APBB2.qApr07
Length: 3248
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Transcript: APBB2.vaApr07
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FOX.APBB2.F1
TTCTGTAACGCCATCTCCCACC
TTCTGTAACGCCATCTCCCACC
FOX.APBB2.R1
TGCATAGCGTAGGGTTGCTCC
TGCATAGCGTAGGGTTGCTCC