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Home Supplementary data Tumor microenvironment associated modifications of alternative splicing Undissected tissue screen Ovarian sample set ASE signatures and QKI permalink
ASE signatures and QKI ⚙
QPCR Primer Pair List : primer pair list
Gene Forward Reverse
VIEW ABI1 ABI1_cass_L_5_f ABI1_cass_L_6_r
VIEW ABI1 ABI1_cass_S_3_f ABI1.S.R1
VIEW APBB2 APBB2_cass_L_f APBB2_cass_L_r
VIEW APBB2 APBB2_cass_S_f APBB2_cass_S_r
VIEW ATP11C ATP11C_cass_L_1_f ATP11C_cass_L_2_r
VIEW ATP11C ATP11C_cass_S_2_f ATP11C_cass_S_1_r
VIEW CAST CAST_cass_L_2_f CAST_cass_L_4_r
VIEW CAST CAST_cass_S_3_f CAST_cass_S_3_r
VIEW CD46 CD46_cass_L_f CD46_cass_L_r
VIEW CD46 CD46_cass_S_f CD46_cass_S_r
VIEW CD47 CD47_cass_L_f CD47_cass_L_r
VIEW CD47 CD47_cass_S_f CD47_cass_S_r
VIEW CD68 CD68_alt3_L_f CD68_alt3_S_r
VIEW CD68 CD68_alt3_S_f CD68_alt3_S_r
VIEW EIF4G2 EIF4G2_cass_L_f EIF4G2_cass_L_r
VIEW EIF4G2 EIF4G2_cass_S_f EIF4G2_cass_S_r
VIEW FNIP1/FNIP1andRAPGEF6/RAPGEF6 KIAA1961_cass_L_f KIAA1961_cass_L_r
VIEW FNIP1/FNIP1andRAPGEF6/RAPGEF6 KIAA1961_cass_S_f KIAA1961_cass_S_r
VIEW GIGYF2 TNRC15_cass_L_f TNRC15_cass_L_r
VIEW GIGYF2 TNRC15_cass_S_f TNRC15_cass_S_r
QPCR Primer Pair List : event list
Short Long
VIEW ABI1_cass_S_3_f ABI1.S.R1 ABI1_cass_L_5_f ABI1_cass_L_6_r
VIEW APBB2_cass_S_f APBB2_cass_S_r APBB2_cass_L_f APBB2_cass_L_r
VIEW ATP11C_cass_S_2_f ATP11C_cass_S_1_r ATP11C_cass_L_1_f ATP11C_cass_L_2_r
VIEW CAST_cass_S_3_f CAST_cass_S_3_r CAST_cass_L_2_f CAST_cass_L_4_r
VIEW CD46_cass_S_f CD46_cass_S_r CD46_cass_L_f CD46_cass_L_r
VIEW CD47_cass_S_f CD47_cass_S_r CD47_cass_L_f CD47_cass_L_r
VIEW CD68_alt3_S_f CD68_alt3_S_r CD68_alt3_L_f CD68_alt3_S_r
VIEW EIF4G2_cass_S_f EIF4G2_cass_S_r EIF4G2_cass_L_f EIF4G2_cass_L_r
VIEW GIT2_cass_S_2_f GIT2_cass_S_1_r GIT2_cass_L_2_f GIT2_cass_S_1_r
VIEW ITGA6_S_1_f ITGA6_S_r ITGA6_L_f ITGA6_L_1_r
VIEW KIAA1217_cass_S_f KIAA1217_cass_S_r KIAA1217_cass_L_f KIAA1217_cass_L_r
VIEW KIAA1961_cass_S_f KIAA1961_cass_S_r KIAA1961_cass_L_f KIAA1961_cass_L_r
VIEW KIF13A_cass_S_f KIF13A_cass_S_r KIF13A_cass_L_f KIF13A_cass_L_r
VIEW M-RIP_cass_S_f M-RIP_cass_S_1_r M-RIP_cass_L_f M-RIP_cass_L_1_r
VIEW MARCH8_cass_S_f MARCH8_cass_S_r MARCH8_cass_L_f MARCH8_cass_L_1_r
VIEW MSRB3_cass_S_f MSRB3_cass_S_r MSRB3_cass_L_f MSRB3_cass_L_r
VIEW NDRG2_cass_S_f NDRG2_cass_S_2_r NDRG2_cass_L_1_f NDRG2_cass_S_2_r
VIEW NFAT5_cass_S_f NFAT5_cass_S_r NFAT5_cass_L_f NFAT5_cass_L_r
VIEW OSBPL9_cass_S_5_f OSBPL9_cass_S_4_r OSBPL9_cass_L_4_f OSBPL9_cass_S_4_r
VIEW PB1_cass_S_f PB1_cass_S_r PB1_cass_L_f PB1_cass_L_r
QPCR Relative Expression Quantification : Summary

Expression Table

ID Name
1 OVC 318
2 OVC 340
3 OVC A01680102
4 OVC B00873104
5 OVC D00921
6 OVCAR3
7 SKOV3ip1
8 ovary A00830102 G3
9 ovary A01360105 G3
10 ovary B00091102 G3
11 ovary B00601101 G1
12 ovary B01152101 G1
13 ovary B01183101 G3
14 ovary B01238103 G3
15 ovary B01582103 G3
16 ovary D0070110 G3
17 ovary E00606101 G3
18 ovary OSC 329 BT G3
19 ovary OSC 446 BT G3
20 ovary OSC 456 BT G3
Primer Pair S1 S2 S3 S4 S5 S6 S7 S8 S9 S10 S11 S12 S13 S14 S15 S16 S17 S18 S19 S20 S21 S22 S23 S24 S25 S26 S27 S28 S29 S30 S31 S32 S33 S34 S35 S36 S37 S38 S39 S40 S41 S42 S43 S44
ABI1_cass_L_5_f ABI1_cass_L_6_r 0.921 0.706 1.184 0.441 0.534 0.180 0.850 0.420 1.018 0.928 0.718 1.664 0.377 1.056 1.141 1.201 2.946 0.513 0.580 0.892 0.874 1.410 0.342 0.474 0.895 2.116 0.857 1.340 2.173 0.683 2.415 1.358 2.952 0.866 1.219 0.786 1.776 1.493 0.821 0.969 0.871 1.132 1.054 1.154
ABI1_cass_S_3_f ABI1.S.R1 1.467 0.676 0.979 0.543 1.897 0.409 0.461 1.483 1.572 2.362 1.909 1.712 1.728 1.140 1.166 0.750 5.716 1.113 0.603 3.077 1.274 1.991 0.642 1.488 0.193 0.453 0.143 0.245 0.211 0.166 0.392 0.125 0.219 0.031 0.324 0.182 0.456 0.284 1.088 0.719 1.994 0.647 0.733 0.819
APBB2_cass_L_f APBB2_cass_L_r 0.254 0.214 0.341 0.121 0.566 0.104 0.211 0.233 1.610 0.618 0.496 1.219 0.509 0.259 0.424 0.960 0.623 0.294 0.360 0.447 0.207 1.593 0.270 0.224 0.648 0.954 0.511 0.569 1.282 0.471 0.836 1.062 1.971 1.218 0.400 0.990 2.333 1.279 0.678 0.898 0.629 1.469 1.254 1.071
APBB2_cass_S_f APBB2_cass_S_r 1.033 0.294 1.106 0.374 0.470 0.027 0.027 0.961 1.347 2.853 1.280 2.760 4.977 0.442 4.194 2.223 1.814 5.264 1.549 3.036 0.215 1.917 0.938 11.292 0.281 1.158 0.547 0.260 0.801 0.289 1.503 1.023 1.364 1.051 0.113 0.572 1.126 1.256 0.877 1.230 1.198 0.600 1.174 0.920
ATP11C_cass_L_1_f ATP11C_cass_L_2_r 1.152 8.511 0.902 0.640 1.840 1.527 0.883 0.704 1.492 1.928 1.895 4.727 0.533 0.374 1.797 1.662 3.240 1.793 1.620 8.760 0.583 1.749 0.961 1.396 0.691 1.030 0.673 0.407 1.210 0.399 0.958 0.725 1.457 1.099 0.578 1.100 1.575 0.678 1.227 0.893 1.426 0.929 0.680 0.845
ATP11C_cass_S_2_f ATP11C_cass_S_1_r 0.078 0.233 0.100 0.033 0.216 0.110 0.156 0.078 0.106 0.181 0.122 0.090 0.031 0.164 0.246 0.233 0.266 0.210 0.076 0.118 1.002 0.205 0.144 0.823 1.910 0.770 1.315 3.305 0.526 2.398 2.123 2.593 2.414 0.725 2.726 2.233 1.176 0.727 1.005 0.548 1.387 1.157 1.176
CAST_cass_L_2_f CAST_cass_L_4_r 0.092 0.074 0.061 0.043 0.023 0.017 0.425 0.087 0.238 0.064 0.072 0.619 0.096 0.051 0.056 0.155 0.118 0.251 0.192 0.428 0.190 0.609 0.162 0.132 1.317 2.257 0.840 0.538 1.495 0.677 1.247 1.438 3.616 2.393 2.559 2.288 2.715 1.112 0.733 0.835 0.512 1.500 1.516 0.904
CAST_cass_S_3_f CAST_cass_S_3_r 2.055 2.075 2.016 1.757 3.272 0.964 1.315 0.819 0.979 0.578 0.845 0.959 0.956 0.922 0.918 2.343 0.824 10.448 0.982 2.278 0.658 1.376 0.316 1.069 1.101 1.412 0.761 0.314 0.800 1.120 0.702 1.023 0.806 1.487 0.816 0.869
CD46_cass_L_f CD46_cass_L_r 0.754 0.375 0.796 0.234 0.667 0.271 0.427 0.319 0.382 0.925 1.047 1.519 0.171 0.423 0.658 0.633 2.091 0.487 0.190 0.900 0.476 0.833 0.139 0.475 0.485 1.047 0.336 0.521 1.027 0.213 1.102 0.836 0.968 0.635 0.490 0.347 0.607 0.960 0.848 0.940 0.896 1.099 1.138 1.079
CD46_cass_S_f CD46_cass_S_r 1.919 1.331 2.785 0.818 1.893 0.570 0.856 1.629 2.037 2.106 1.789 3.926 1.225 0.569 1.618 1.099 3.655 0.623 0.301 2.983 1.114 1.024 0.591 2.169 0.137 0.409 0.111 0.189 0.343 0.220 0.464 0.314 0.395 0.242 0.161 0.108 0.280 0.354 1.258 0.987 1.745 0.590 0.701 0.719
CD47_cass_L_f CD47_cass_L_r 3.726 1.174 2.599 1.590 2.450 18.667 0.302 4.827 67.665 2.368 1.517 1.148 6.538 0.685 1.521 0.971 0.301 7.466 4.045 6.950 4.310 1.536 17.783 4.845 0.040 0.138 0.069 0.099 0.120 0.093 0.291 0.175 0.410 0.149 0.090 0.070 0.207 0.089 1.506 0.559 2.116 0.608 0.776 0.435
CD47_cass_S_f CD47_cass_S_r 2.344 1.763 2.097 1.074 2.288 14.806 0.287 5.809 13.290 3.792 2.121 2.353 6.251 0.605 0.964 0.996 0.314 6.133 5.526 8.308 5.028 1.351 7.292 4.624 0.025 0.135 0.024 0.040 0.070 0.136 0.121 0.038 0.055 0.060 0.196 0.102 0.042 2.701 0.743 1.306 0.274 0.445 0.531
CD68_alt3_L_f CD68_alt3_S_r 1.467 1.737 0.834 0.775 0.580 0.022 0.168 1.367 1.924 1.888 2.713 1.538 1.698 0.997 2.454 1.912 1.774 1.725 0.532 3.311 0.667 2.815 1.893 1.645 0.296 0.450 0.246 0.576 0.623 1.149 0.345 0.631 0.676 0.562 0.920 2.548 3.896 0.356 0.963 0.982 0.803 1.153 1.087 1.012
CD68_alt3_S_f CD68_alt3_S_r 1.094 0.644 0.894 0.550 0.484 0.204 0.555 1.501 0.782 2.315 2.075 1.398 0.633 1.580 1.615 1.683 1.291 0.309 3.250 0.686 2.991 1.401 1.363 1.021 2.074 1.810 1.237 0.908 1.186 1.563 0.730 1.580 2.387 1.477 2.410 4.360 0.957 0.940 1.018 0.956 1.262 1.002 0.823
EIF4G2_cass_L_f EIF4G2_cass_L_r 0.994 0.866 1.051 0.455 0.936 1.225 0.869 0.744 1.258 0.931 0.905 1.194 0.710 0.444 1.442 1.397 1.436 0.833 0.531 1.758 0.436 1.240 0.519 1.670 0.586 1.017 0.534 0.660 1.138 0.299 1.186 0.740 1.517 0.713 0.390 0.689 1.245 0.792 1.070 1.010 1.000 0.899 0.956 1.064
EIF4G2_cass_S_f EIF4G2_cass_S_r 2.552 0.764 1.361 0.701 1.449 2.586 2.926 1.002 0.955 0.562 1.501 2.741 0.545 0.424 1.173 1.815 1.644 0.716 0.527 0.825 0.508 1.270 0.427 1.801 0.500 0.905 0.349 0.422 0.966 0.456 1.093 0.602 0.881 0.824 0.483 0.607 0.731 0.723 1.052 1.011 1.133 0.941 0.836 1.028
GIT2_cass_L_2_f GIT2_cass_S_1_r 0.768 0.716 2.079 0.687 2.140 0.141 0.645 0.600 1.566 1.451 1.125 1.169 0.760 0.423 1.147 0.853 1.231 1.873 0.478 2.005 0.259 1.950 0.391 0.700 0.531 1.010 0.678 0.382 1.291 0.315 0.599 0.843 2.423 1.221 0.539 0.637 1.682 1.523 0.972 0.840 1.117 1.007 0.882 1.182
GIT2_cass_S_2_f GIT2_cass_S_1_r 0.790 1.225 1.465 0.693 1.070 0.166 0.769 0.995 2.065 1.678 1.542 2.908 1.088 0.738 1.979 1.299 1.265 0.924 0.910 1.787 0.163 1.492 0.474 0.973 0.474 0.152 0.299 0.240 1.371 0.582 0.319 0.636 1.550 0.834 0.511 1.076 1.062 1.060 0.840 0.730 0.789 1.125 1.500 1.017
ITGA6_L_f ITGA6_L_1_r 0.762 0.186 0.762 0.577 1.109 0.112 0.520 0.262 0.625 0.981 1.876 2.682 0.072 1.305 0.478 0.626 7.974 0.100 0.259 0.741 0.171 0.602 0.153 0.323 0.029 0.094 0.047 0.043 0.225 0.156 0.128 0.131 0.078 0.114 0.061 0.234 0.375 0.073 1.023 1.325 0.908 0.851 0.572 1.321
ITGA6_S_1_f ITGA6_S_r 0.578 0.682 1.007 0.527 1.184 0.059 0.389 0.335 1.287 0.789 1.598 0.769 0.246 0.782 0.548 0.670 3.976 0.275 0.172 0.505 0.156 0.592 0.147 0.709 0.037 0.087 0.033 0.073 0.221 0.288 0.135 0.060 0.045 0.039 0.025 0.131 0.503 0.061 1.108 1.365 0.980 0.769 0.540 1.238
QPCR QPSI
QPCR Relative Expression Quantification : Systematic Outlier Filtering

0 technical replicates removed (absolute Ct threshold 0.75; MADZ 3.5)

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0 biological replicates removed (relative expression threshold 0.25; MADZ 2.1)

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QPCR Reference Gene Page : .

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