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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
1. Initial RefSeq screen / epithelium and mesenchyme (fetal colon)
Transcript map
: ABTB1 epithelium
Exon
Length: 144
Transcript: NM_032548
Length: 144
Transcript: NM_032548
Exon
Length: 74
Transcript: NM_032548
Length: 74
Transcript: NM_032548
Exon
Length: 56
Transcript: NM_032548
Length: 56
Transcript: NM_032548
Exon
Length: 145
Transcript: NM_032548
Length: 145
Transcript: NM_032548
Exon
Length: 160
Transcript: NM_032548
Length: 160
Transcript: NM_032548
Exon
Length: 46
Transcript: NM_032548
Length: 46
Transcript: NM_032548
Exon
Length: 117
Transcript: NM_032548
Length: 117
Transcript: NM_032548
Exon
Length: 119
Transcript: NM_032548
Length: 119
Transcript: NM_032548
Exon
Length: 99
Transcript: NM_032548
Length: 99
Transcript: NM_032548
Exon
Length: 168
Transcript: NM_032548
Length: 168
Transcript: NM_032548
Exon
Length: 201
Transcript: NM_032548
Length: 201
Transcript: NM_032548
Exon
Length: 652
Transcript: NM_032548
Length: 652
Transcript: NM_032548
Intron
Length: 1263
Transcript: NM_032548
Length: 1263
Transcript: NM_032548
Intron
Length: 126
Transcript: NM_032548
Length: 126
Transcript: NM_032548
Intron
Length: 1369
Transcript: NM_032548
Length: 1369
Transcript: NM_032548
Intron
Length: 157
Transcript: NM_032548
Length: 157
Transcript: NM_032548
Intron
Length: 104
Transcript: NM_032548
Length: 104
Transcript: NM_032548
Intron
Length: 385
Transcript: NM_032548
Length: 385
Transcript: NM_032548
Intron
Length: 84
Transcript: NM_032548
Length: 84
Transcript: NM_032548
Intron
Length: 178
Transcript: NM_032548
Length: 178
Transcript: NM_032548
Intron
Length: 112
Transcript: NM_032548
Length: 112
Transcript: NM_032548
Intron
Length: 2141
Transcript: NM_032548
Length: 2141
Transcript: NM_032548
Intron
Length: 83
Transcript: NM_032548
Length: 83
Transcript: NM_032548
Reaction
Expected peak: 167
19M
refseq_ABTB1.F1
refseq_ABTB1.R1
Expected peak: 167
19M
refseq_ABTB1.F1
refseq_ABTB1.R1
Exon
Length: 144
Transcript: NM_172027
Length: 144
Transcript: NM_172027
Exon
Length: 63
Transcript: NM_172027
Length: 63
Transcript: NM_172027
Exon
Length: 56
Transcript: NM_172027
Length: 56
Transcript: NM_172027
Exon
Length: 145
Transcript: NM_172027
Length: 145
Transcript: NM_172027
Exon
Length: 160
Transcript: NM_172027
Length: 160
Transcript: NM_172027
Exon
Length: 46
Transcript: NM_172027
Length: 46
Transcript: NM_172027
Exon
Length: 117
Transcript: NM_172027
Length: 117
Transcript: NM_172027
Exon
Length: 119
Transcript: NM_172027
Length: 119
Transcript: NM_172027
Exon
Length: 99
Transcript: NM_172027
Length: 99
Transcript: NM_172027
Exon
Length: 168
Transcript: NM_172027
Length: 168
Transcript: NM_172027
Exon
Length: 201
Transcript: NM_172027
Length: 201
Transcript: NM_172027
Exon
Length: 652
Transcript: NM_172027
Length: 652
Transcript: NM_172027
Intron
Length: 1309
Transcript: NM_172027
Length: 1309
Transcript: NM_172027
Intron
Length: 91
Transcript: NM_172027
Length: 91
Transcript: NM_172027
Intron
Length: 1369
Transcript: NM_172027
Length: 1369
Transcript: NM_172027
Intron
Length: 157
Transcript: NM_172027
Length: 157
Transcript: NM_172027
Intron
Length: 104
Transcript: NM_172027
Length: 104
Transcript: NM_172027
Intron
Length: 385
Transcript: NM_172027
Length: 385
Transcript: NM_172027
Intron
Length: 84
Transcript: NM_172027
Length: 84
Transcript: NM_172027
Intron
Length: 178
Transcript: NM_172027
Length: 178
Transcript: NM_172027
Intron
Length: 112
Transcript: NM_172027
Length: 112
Transcript: NM_172027
Intron
Length: 2141
Transcript: NM_172027
Length: 2141
Transcript: NM_172027
Intron
Length: 83
Transcript: NM_172027
Length: 83
Transcript: NM_172027
Reaction
Expected peak: 202
25.6M
refseq_ABTB1.F1
refseq_ABTB1.R1
Expected peak: 202
25.6M
refseq_ABTB1.F1
refseq_ABTB1.R1
Exon
Length: 144
Transcript: NM_172028
Length: 144
Transcript: NM_172028
Exon
Length: 28
Transcript: NM_172028
Length: 28
Transcript: NM_172028
Exon
Length: 56
Transcript: NM_172028
Length: 56
Transcript: NM_172028
Exon
Length: 145
Transcript: NM_172028
Length: 145
Transcript: NM_172028
Exon
Length: 160
Transcript: NM_172028
Length: 160
Transcript: NM_172028
Exon
Length: 46
Transcript: NM_172028
Length: 46
Transcript: NM_172028
Exon
Length: 117
Transcript: NM_172028
Length: 117
Transcript: NM_172028
Exon
Length: 119
Transcript: NM_172028
Length: 119
Transcript: NM_172028
Exon
Length: 99
Transcript: NM_172028
Length: 99
Transcript: NM_172028
Exon
Length: 168
Transcript: NM_172028
Length: 168
Transcript: NM_172028
Exon
Length: 201
Transcript: NM_172028
Length: 201
Transcript: NM_172028
Exon
Length: 652
Transcript: NM_172028
Length: 652
Transcript: NM_172028
Intron
Length: 1309
Transcript: NM_172028
Length: 1309
Transcript: NM_172028
Intron
Length: 126
Transcript: NM_172028
Length: 126
Transcript: NM_172028
Intron
Length: 1369
Transcript: NM_172028
Length: 1369
Transcript: NM_172028
Intron
Length: 157
Transcript: NM_172028
Length: 157
Transcript: NM_172028
Intron
Length: 104
Transcript: NM_172028
Length: 104
Transcript: NM_172028
Intron
Length: 385
Transcript: NM_172028
Length: 385
Transcript: NM_172028
Intron
Length: 84
Transcript: NM_172028
Length: 84
Transcript: NM_172028
Intron
Length: 178
Transcript: NM_172028
Length: 178
Transcript: NM_172028
Intron
Length: 112
Transcript: NM_172028
Length: 112
Transcript: NM_172028
Intron
Length: 2141
Transcript: NM_172028
Length: 2141
Transcript: NM_172028
Intron
Length: 83
Transcript: NM_172028
Length: 83
Transcript: NM_172028
Reaction
Expected peak: 167
19M
refseq_ABTB1.F1
refseq_ABTB1.R1
Expected peak: 167
19M
refseq_ABTB1.F1
refseq_ABTB1.R1
refseq_ABTB1.R1
GCTTGTAATCGCGTAGAGCC
GCTTGTAATCGCGTAGAGCC
refseq_ABTB1.F1
GAGCAGCGAGACGTGGAG
GAGCAGCGAGACGTGGAG