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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
1. Initial RefSeq screen / epithelium and mesenchyme (fetal colon)
Transcript map
: ADAMTSL1 epithelium
Exon
Length: 127
Transcript: NM_052866
Length: 127
Transcript: NM_052866
Exon
Length: 128
Transcript: NM_052866
Length: 128
Transcript: NM_052866
Exon
Length: 46
Transcript: NM_052866
Length: 46
Transcript: NM_052866
Exon
Length: 237
Transcript: NM_052866
Length: 237
Transcript: NM_052866
Exon
Length: 127
Transcript: NM_052866
Length: 127
Transcript: NM_052866
Exon
Length: 75
Transcript: NM_052866
Length: 75
Transcript: NM_052866
Exon
Length: 158
Transcript: NM_052866
Length: 158
Transcript: NM_052866
Exon
Length: 112
Transcript: NM_052866
Length: 112
Transcript: NM_052866
Exon
Length: 139
Transcript: NM_052866
Length: 139
Transcript: NM_052866
Exon
Length: 51
Transcript: NM_052866
Length: 51
Transcript: NM_052866
Exon
Length: 205
Transcript: NM_052866
Length: 205
Transcript: NM_052866
Exon
Length: 148
Transcript: NM_052866
Length: 148
Transcript: NM_052866
Exon
Length: 242
Transcript: NM_052866
Length: 242
Transcript: NM_052866
Intron
Length: 30533
Transcript: NM_052866
Length: 30533
Transcript: NM_052866
Intron
Length: 28290
Transcript: NM_052866
Length: 28290
Transcript: NM_052866
Intron
Length: 40737
Transcript: NM_052866
Length: 40737
Transcript: NM_052866
Intron
Length: 47976
Transcript: NM_052866
Length: 47976
Transcript: NM_052866
Intron
Length: 13573
Transcript: NM_052866
Length: 13573
Transcript: NM_052866
Intron
Length: 3236
Transcript: NM_052866
Length: 3236
Transcript: NM_052866
Intron
Length: 18227
Transcript: NM_052866
Length: 18227
Transcript: NM_052866
Intron
Length: 4184
Transcript: NM_052866
Length: 4184
Transcript: NM_052866
Intron
Length: 13783
Transcript: NM_052866
Length: 13783
Transcript: NM_052866
Intron
Length: 4404
Transcript: NM_052866
Length: 4404
Transcript: NM_052866
Intron
Length: 1295
Transcript: NM_052866
Length: 1295
Transcript: NM_052866
Intron
Length: 2756
Transcript: NM_052866
Length: 2756
Transcript: NM_052866
Reaction
Expected peak: 311
8.1M
refseq_ADAMTSL1.F2
refseq_ADAMTSL1.R2
Expected peak: 311
8.1M
refseq_ADAMTSL1.F2
refseq_ADAMTSL1.R2
Exon
Length: 127
Transcript: NM_139238
Length: 127
Transcript: NM_139238
Exon
Length: 128
Transcript: NM_139238
Length: 128
Transcript: NM_139238
Exon
Length: 46
Transcript: NM_139238
Length: 46
Transcript: NM_139238
Exon
Length: 237
Transcript: NM_139238
Length: 237
Transcript: NM_139238
Exon
Length: 127
Transcript: NM_139238
Length: 127
Transcript: NM_139238
Exon
Length: 75
Transcript: NM_139238
Length: 75
Transcript: NM_139238
Exon
Length: 158
Transcript: NM_139238
Length: 158
Transcript: NM_139238
Exon
Length: 112
Transcript: NM_139238
Length: 112
Transcript: NM_139238
Exon
Length: 139
Transcript: NM_139238
Length: 139
Transcript: NM_139238
Exon
Length: 51
Transcript: NM_139238
Length: 51
Transcript: NM_139238
Exon
Length: 205
Transcript: NM_139238
Length: 205
Transcript: NM_139238
Exon
Length: 148
Transcript: NM_139238
Length: 148
Transcript: NM_139238
Exon
Length: 85
Transcript: NM_139238
Length: 85
Transcript: NM_139238
Exon
Length: 302
Transcript: NM_139238
Length: 302
Transcript: NM_139238
Exon
Length: 130
Transcript: NM_139238
Length: 130
Transcript: NM_139238
Exon
Length: 247
Transcript: NM_139238
Length: 247
Transcript: NM_139238
Intron
Length: 30533
Transcript: NM_139238
Length: 30533
Transcript: NM_139238
Intron
Length: 28290
Transcript: NM_139238
Length: 28290
Transcript: NM_139238
Intron
Length: 40737
Transcript: NM_139238
Length: 40737
Transcript: NM_139238
Intron
Length: 47976
Transcript: NM_139238
Length: 47976
Transcript: NM_139238
Intron
Length: 13573
Transcript: NM_139238
Length: 13573
Transcript: NM_139238
Intron
Length: 3236
Transcript: NM_139238
Length: 3236
Transcript: NM_139238
Intron
Length: 18227
Transcript: NM_139238
Length: 18227
Transcript: NM_139238
Intron
Length: 4184
Transcript: NM_139238
Length: 4184
Transcript: NM_139238
Intron
Length: 13783
Transcript: NM_139238
Length: 13783
Transcript: NM_139238
Intron
Length: 4404
Transcript: NM_139238
Length: 4404
Transcript: NM_139238
Intron
Length: 1295
Transcript: NM_139238
Length: 1295
Transcript: NM_139238
Intron
Length: 2756
Transcript: NM_139238
Length: 2756
Transcript: NM_139238
Intron
Length: 21946
Transcript: NM_139238
Length: 21946
Transcript: NM_139238
Intron
Length: 14487
Transcript: NM_139238
Length: 14487
Transcript: NM_139238
Intron
Length: 1352
Transcript: NM_139238
Length: 1352
Transcript: NM_139238
Reaction
Expected peak: 311
8.1M
refseq_ADAMTSL1.F2
refseq_ADAMTSL1.R2
Expected peak: 311
8.1M
refseq_ADAMTSL1.F2
refseq_ADAMTSL1.R2
Exon
Length: 127
Transcript: NM_139264
Length: 127
Transcript: NM_139264
Exon
Length: 128
Transcript: NM_139264
Length: 128
Transcript: NM_139264
Exon
Length: 46
Transcript: NM_139264
Length: 46
Transcript: NM_139264
Exon
Length: 237
Transcript: NM_139264
Length: 237
Transcript: NM_139264
Exon
Length: 127
Transcript: NM_139264
Length: 127
Transcript: NM_139264
Exon
Length: 75
Transcript: NM_139264
Length: 75
Transcript: NM_139264
Exon
Length: 158
Transcript: NM_139264
Length: 158
Transcript: NM_139264
Exon
Length: 112
Transcript: NM_139264
Length: 112
Transcript: NM_139264
Exon
Length: 139
Transcript: NM_139264
Length: 139
Transcript: NM_139264
Exon
Length: 1172
Transcript: NM_139264
Length: 1172
Transcript: NM_139264
Intron
Length: 30533
Transcript: NM_139264
Length: 30533
Transcript: NM_139264
Intron
Length: 28290
Transcript: NM_139264
Length: 28290
Transcript: NM_139264
Intron
Length: 40737
Transcript: NM_139264
Length: 40737
Transcript: NM_139264
Intron
Length: 47976
Transcript: NM_139264
Length: 47976
Transcript: NM_139264
Intron
Length: 13573
Transcript: NM_139264
Length: 13573
Transcript: NM_139264
Intron
Length: 3236
Transcript: NM_139264
Length: 3236
Transcript: NM_139264
Intron
Length: 18227
Transcript: NM_139264
Length: 18227
Transcript: NM_139264
Intron
Length: 4184
Transcript: NM_139264
Length: 4184
Transcript: NM_139264
Intron
Length: 18238
Transcript: NM_139264
Length: 18238
Transcript: NM_139264
Reaction
Expected peak: 260
1.4M
refseq_ADAMTSL1.F2
refseq_ADAMTSL1.R2
Expected peak: 260
1.4M
refseq_ADAMTSL1.F2
refseq_ADAMTSL1.R2
refseq_ADAMTSL1.R2
ATGGGCATCTTAGGGGTGTAC
ATGGGCATCTTAGGGGTGTAC
refseq_ADAMTSL1.F2
TACGATCTGAGGAGCAACCG
TACGATCTGAGGAGCAACCG