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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
1. Initial RefSeq screen / epithelium and mesenchyme (fetal colon)
Transcript map
: AGC1 epithelium
Exon
Length: 51
Transcript: NM_001135
Length: 51
Transcript: NM_001135
Exon
Length: 77
Transcript: NM_001135
Length: 77
Transcript: NM_001135
Exon
Length: 384
Transcript: NM_001135
Length: 384
Transcript: NM_001135
Exon
Length: 175
Transcript: NM_001135
Length: 175
Transcript: NM_001135
Exon
Length: 128
Transcript: NM_001135
Length: 128
Transcript: NM_001135
Exon
Length: 294
Transcript: NM_001135
Length: 294
Transcript: NM_001135
Exon
Length: 378
Transcript: NM_001135
Length: 378
Transcript: NM_001135
Exon
Length: 175
Transcript: NM_001135
Length: 175
Transcript: NM_001135
Exon
Length: 128
Transcript: NM_001135
Length: 128
Transcript: NM_001135
Exon
Length: 294
Transcript: NM_001135
Length: 294
Transcript: NM_001135
Exon
Length: 240
Transcript: NM_001135
Length: 240
Transcript: NM_001135
Exon
Length: 1334
Transcript: NM_001135
Length: 1334
Transcript: NM_001135
Exon
Length: 2890
Transcript: NM_001135
Length: 2890
Transcript: NM_001135
Exon
Length: 159
Transcript: NM_001135
Length: 159
Transcript: NM_001135
Exon
Length: 83
Transcript: NM_001135
Length: 83
Transcript: NM_001135
Exon
Length: 145
Transcript: NM_001135
Length: 145
Transcript: NM_001135
Exon
Length: 196
Transcript: NM_001135
Length: 196
Transcript: NM_001135
Intron
Length: 32390
Transcript: NM_001135
Length: 32390
Transcript: NM_001135
Intron
Length: 2386
Transcript: NM_001135
Length: 2386
Transcript: NM_001135
Intron
Length: 965
Transcript: NM_001135
Length: 965
Transcript: NM_001135
Intron
Length: 1553
Transcript: NM_001135
Length: 1553
Transcript: NM_001135
Intron
Length: 1487
Transcript: NM_001135
Length: 1487
Transcript: NM_001135
Intron
Length: 1856
Transcript: NM_001135
Length: 1856
Transcript: NM_001135
Intron
Length: 1360
Transcript: NM_001135
Length: 1360
Transcript: NM_001135
Intron
Length: 493
Transcript: NM_001135
Length: 493
Transcript: NM_001135
Intron
Length: 1399
Transcript: NM_001135
Length: 1399
Transcript: NM_001135
Intron
Length: 2062
Transcript: NM_001135
Length: 2062
Transcript: NM_001135
Intron
Length: 2818
Transcript: NM_001135
Length: 2818
Transcript: NM_001135
Intron
Length: 342
Transcript: NM_001135
Length: 342
Transcript: NM_001135
Intron
Length: 11964
Transcript: NM_001135
Length: 11964
Transcript: NM_001135
Intron
Length: 462
Transcript: NM_001135
Length: 462
Transcript: NM_001135
Intron
Length: 795
Transcript: NM_001135
Length: 795
Transcript: NM_001135
Intron
Length: 1379
Transcript: NM_001135
Length: 1379
Transcript: NM_001135
Reaction
Expected peak: 104
0M
refseq_AGC1.F3
refseq_AGC1.R3
Expected peak: 104
0M
refseq_AGC1.F3
refseq_AGC1.R3
Exon
Length: 51
Transcript: NM_013227
Length: 51
Transcript: NM_013227
Exon
Length: 77
Transcript: NM_013227
Length: 77
Transcript: NM_013227
Exon
Length: 384
Transcript: NM_013227
Length: 384
Transcript: NM_013227
Exon
Length: 175
Transcript: NM_013227
Length: 175
Transcript: NM_013227
Exon
Length: 128
Transcript: NM_013227
Length: 128
Transcript: NM_013227
Exon
Length: 294
Transcript: NM_013227
Length: 294
Transcript: NM_013227
Exon
Length: 378
Transcript: NM_013227
Length: 378
Transcript: NM_013227
Exon
Length: 175
Transcript: NM_013227
Length: 175
Transcript: NM_013227
Exon
Length: 128
Transcript: NM_013227
Length: 128
Transcript: NM_013227
Exon
Length: 294
Transcript: NM_013227
Length: 294
Transcript: NM_013227
Exon
Length: 240
Transcript: NM_013227
Length: 240
Transcript: NM_013227
Exon
Length: 1334
Transcript: NM_013227
Length: 1334
Transcript: NM_013227
Exon
Length: 2890
Transcript: NM_013227
Length: 2890
Transcript: NM_013227
Exon
Length: 114
Transcript: NM_013227
Length: 114
Transcript: NM_013227
Exon
Length: 159
Transcript: NM_013227
Length: 159
Transcript: NM_013227
Exon
Length: 83
Transcript: NM_013227
Length: 83
Transcript: NM_013227
Exon
Length: 145
Transcript: NM_013227
Length: 145
Transcript: NM_013227
Exon
Length: 183
Transcript: NM_013227
Length: 183
Transcript: NM_013227
Exon
Length: 196
Transcript: NM_013227
Length: 196
Transcript: NM_013227
Intron
Length: 32390
Transcript: NM_013227
Length: 32390
Transcript: NM_013227
Intron
Length: 2386
Transcript: NM_013227
Length: 2386
Transcript: NM_013227
Intron
Length: 965
Transcript: NM_013227
Length: 965
Transcript: NM_013227
Intron
Length: 1553
Transcript: NM_013227
Length: 1553
Transcript: NM_013227
Intron
Length: 1487
Transcript: NM_013227
Length: 1487
Transcript: NM_013227
Intron
Length: 1856
Transcript: NM_013227
Length: 1856
Transcript: NM_013227
Intron
Length: 1360
Transcript: NM_013227
Length: 1360
Transcript: NM_013227
Intron
Length: 493
Transcript: NM_013227
Length: 493
Transcript: NM_013227
Intron
Length: 1399
Transcript: NM_013227
Length: 1399
Transcript: NM_013227
Intron
Length: 2062
Transcript: NM_013227
Length: 2062
Transcript: NM_013227
Intron
Length: 2818
Transcript: NM_013227
Length: 2818
Transcript: NM_013227
Intron
Length: 342
Transcript: NM_013227
Length: 342
Transcript: NM_013227
Intron
Length: 908
Transcript: NM_013227
Length: 908
Transcript: NM_013227
Intron
Length: 10942
Transcript: NM_013227
Length: 10942
Transcript: NM_013227
Intron
Length: 462
Transcript: NM_013227
Length: 462
Transcript: NM_013227
Intron
Length: 795
Transcript: NM_013227
Length: 795
Transcript: NM_013227
Intron
Length: 816
Transcript: NM_013227
Length: 816
Transcript: NM_013227
Intron
Length: 380
Transcript: NM_013227
Length: 380
Transcript: NM_013227
Reaction
Expected peak: 218
2.8M
refseq_AGC1.F3
refseq_AGC1.R3
Expected peak: 218
2.8M
refseq_AGC1.F3
refseq_AGC1.R3
refseq_AGC1.R3
GGAAGTGGCGGTAACAGTGG
GGAAGTGGCGGTAACAGTGG
refseq_AGC1.F3
AGCTTCTCCGGAATGGAAAC
AGCTTCTCCGGAATGGAAAC