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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
1. Initial RefSeq screen / epithelium and mesenchyme (fetal colon)
Transcript map
: ABCB9 epithelium
- refseq_ABCB9.F4 / refseq_ABCB9.R4 (CM019542 N4) : Curve | Curve set
- refseq_ABCB9.F1 / refseq_ABCB9.R1 (CM019542 F7) : Curve | Curve set
Exon
Length: 199
Transcript: NM_019624
Length: 199
Transcript: NM_019624
Exon
Length: 688
Transcript: NM_019624
Length: 688
Transcript: NM_019624
Exon
Length: 115
Transcript: NM_019624
Length: 115
Transcript: NM_019624
Exon
Length: 131
Transcript: NM_019624
Length: 131
Transcript: NM_019624
Exon
Length: 206
Transcript: NM_019624
Length: 206
Transcript: NM_019624
Exon
Length: 198
Transcript: NM_019624
Length: 198
Transcript: NM_019624
Exon
Length: 189
Transcript: NM_019624
Length: 189
Transcript: NM_019624
Exon
Length: 174
Transcript: NM_019624
Length: 174
Transcript: NM_019624
Exon
Length: 160
Transcript: NM_019624
Length: 160
Transcript: NM_019624
Exon
Length: 137
Transcript: NM_019624
Length: 137
Transcript: NM_019624
Exon
Length: 1180
Transcript: NM_019624
Length: 1180
Transcript: NM_019624
Intron
Length: 5964
Transcript: NM_019624
Length: 5964
Transcript: NM_019624
Intron
Length: 9069
Transcript: NM_019624
Length: 9069
Transcript: NM_019624
Intron
Length: 532
Transcript: NM_019624
Length: 532
Transcript: NM_019624
Intron
Length: 958
Transcript: NM_019624
Length: 958
Transcript: NM_019624
Intron
Length: 2401
Transcript: NM_019624
Length: 2401
Transcript: NM_019624
Intron
Length: 5029
Transcript: NM_019624
Length: 5029
Transcript: NM_019624
Intron
Length: 522
Transcript: NM_019624
Length: 522
Transcript: NM_019624
Intron
Length: 4679
Transcript: NM_019624
Length: 4679
Transcript: NM_019624
Intron
Length: 2943
Transcript: NM_019624
Length: 2943
Transcript: NM_019624
Intron
Length: 2020
Transcript: NM_019624
Length: 2020
Transcript: NM_019624
Reaction
Expected peak: 219
0.8M
refseq_ABCB9.F4
refseq_ABCB9.R4
Expected peak: 219
0.8M
refseq_ABCB9.F4
refseq_ABCB9.R4
Exon
Length: 199
Transcript: NM_019625
Length: 199
Transcript: NM_019625
Exon
Length: 688
Transcript: NM_019625
Length: 688
Transcript: NM_019625
Exon
Length: 115
Transcript: NM_019625
Length: 115
Transcript: NM_019625
Exon
Length: 131
Transcript: NM_019625
Length: 131
Transcript: NM_019625
Exon
Length: 206
Transcript: NM_019625
Length: 206
Transcript: NM_019625
Exon
Length: 198
Transcript: NM_019625
Length: 198
Transcript: NM_019625
Exon
Length: 129
Transcript: NM_019625
Length: 129
Transcript: NM_019625
Exon
Length: 189
Transcript: NM_019625
Length: 189
Transcript: NM_019625
Exon
Length: 174
Transcript: NM_019625
Length: 174
Transcript: NM_019625
Exon
Length: 160
Transcript: NM_019625
Length: 160
Transcript: NM_019625
Exon
Length: 137
Transcript: NM_019625
Length: 137
Transcript: NM_019625
Exon
Length: 1180
Transcript: NM_019625
Length: 1180
Transcript: NM_019625
Intron
Length: 5964
Transcript: NM_019625
Length: 5964
Transcript: NM_019625
Intron
Length: 9069
Transcript: NM_019625
Length: 9069
Transcript: NM_019625
Intron
Length: 532
Transcript: NM_019625
Length: 532
Transcript: NM_019625
Intron
Length: 958
Transcript: NM_019625
Length: 958
Transcript: NM_019625
Intron
Length: 2401
Transcript: NM_019625
Length: 2401
Transcript: NM_019625
Intron
Length: 1505
Transcript: NM_019625
Length: 1505
Transcript: NM_019625
Intron
Length: 3395
Transcript: NM_019625
Length: 3395
Transcript: NM_019625
Intron
Length: 522
Transcript: NM_019625
Length: 522
Transcript: NM_019625
Intron
Length: 4679
Transcript: NM_019625
Length: 4679
Transcript: NM_019625
Intron
Length: 2943
Transcript: NM_019625
Length: 2943
Transcript: NM_019625
Intron
Length: 2020
Transcript: NM_019625
Length: 2020
Transcript: NM_019625
Reaction
Expected peak: 348
17.1M
refseq_ABCB9.F4
refseq_ABCB9.R4
Expected peak: 348
17.1M
refseq_ABCB9.F4
refseq_ABCB9.R4
Reaction
Expected peak: 373
16.8M
refseq_ABCB9.F1
refseq_ABCB9.R1
Expected peak: 373
16.8M
refseq_ABCB9.F1
refseq_ABCB9.R1
Exon
Length: 491
Transcript: NM_203444
Length: 491
Transcript: NM_203444
Exon
Length: 688
Transcript: NM_203444
Length: 688
Transcript: NM_203444
Exon
Length: 115
Transcript: NM_203444
Length: 115
Transcript: NM_203444
Exon
Length: 131
Transcript: NM_203444
Length: 131
Transcript: NM_203444
Exon
Length: 206
Transcript: NM_203444
Length: 206
Transcript: NM_203444
Exon
Length: 198
Transcript: NM_203444
Length: 198
Transcript: NM_203444
Exon
Length: 129
Transcript: NM_203444
Length: 129
Transcript: NM_203444
Exon
Length: 189
Transcript: NM_203444
Length: 189
Transcript: NM_203444
Exon
Length: 174
Transcript: NM_203444
Length: 174
Transcript: NM_203444
Exon
Length: 160
Transcript: NM_203444
Length: 160
Transcript: NM_203444
Exon
Length: 137
Transcript: NM_203444
Length: 137
Transcript: NM_203444
Exon
Length: 1173
Transcript: NM_203444
Length: 1173
Transcript: NM_203444
Intron
Length: 14392
Transcript: NM_203444
Length: 14392
Transcript: NM_203444
Intron
Length: 9069
Transcript: NM_203444
Length: 9069
Transcript: NM_203444
Intron
Length: 532
Transcript: NM_203444
Length: 532
Transcript: NM_203444
Intron
Length: 958
Transcript: NM_203444
Length: 958
Transcript: NM_203444
Intron
Length: 2401
Transcript: NM_203444
Length: 2401
Transcript: NM_203444
Intron
Length: 1505
Transcript: NM_203444
Length: 1505
Transcript: NM_203444
Intron
Length: 3395
Transcript: NM_203444
Length: 3395
Transcript: NM_203444
Intron
Length: 522
Transcript: NM_203444
Length: 522
Transcript: NM_203444
Intron
Length: 4679
Transcript: NM_203444
Length: 4679
Transcript: NM_203444
Intron
Length: 2943
Transcript: NM_203444
Length: 2943
Transcript: NM_203444
Intron
Length: 2020
Transcript: NM_203444
Length: 2020
Transcript: NM_203444
Reaction
Expected peak: 348
17.1M
refseq_ABCB9.F4
refseq_ABCB9.R4
Expected peak: 348
17.1M
refseq_ABCB9.F4
refseq_ABCB9.R4
Reaction
Expected peak: 373
16.8M
refseq_ABCB9.F1
refseq_ABCB9.R1
Expected peak: 373
16.8M
refseq_ABCB9.F1
refseq_ABCB9.R1
Exon
Length: 199
Transcript: NM_203445
Length: 199
Transcript: NM_203445
Exon
Length: 688
Transcript: NM_203445
Length: 688
Transcript: NM_203445
Exon
Length: 115
Transcript: NM_203445
Length: 115
Transcript: NM_203445
Exon
Length: 117
Transcript: NM_203445
Length: 117
Transcript: NM_203445
Exon
Length: 206
Transcript: NM_203445
Length: 206
Transcript: NM_203445
Exon
Length: 198
Transcript: NM_203445
Length: 198
Transcript: NM_203445
Exon
Length: 129
Transcript: NM_203445
Length: 129
Transcript: NM_203445
Exon
Length: 174
Transcript: NM_203445
Length: 174
Transcript: NM_203445
Exon
Length: 160
Transcript: NM_203445
Length: 160
Transcript: NM_203445
Exon
Length: 137
Transcript: NM_203445
Length: 137
Transcript: NM_203445
Exon
Length: 1173
Transcript: NM_203445
Length: 1173
Transcript: NM_203445
Intron
Length: 5964
Transcript: NM_203445
Length: 5964
Transcript: NM_203445
Intron
Length: 9069
Transcript: NM_203445
Length: 9069
Transcript: NM_203445
Intron
Length: 546
Transcript: NM_203445
Length: 546
Transcript: NM_203445
Intron
Length: 958
Transcript: NM_203445
Length: 958
Transcript: NM_203445
Intron
Length: 2401
Transcript: NM_203445
Length: 2401
Transcript: NM_203445
Intron
Length: 1505
Transcript: NM_203445
Length: 1505
Transcript: NM_203445
Intron
Length: 4106
Transcript: NM_203445
Length: 4106
Transcript: NM_203445
Intron
Length: 4679
Transcript: NM_203445
Length: 4679
Transcript: NM_203445
Intron
Length: 2943
Transcript: NM_203445
Length: 2943
Transcript: NM_203445
Intron
Length: 2020
Transcript: NM_203445
Length: 2020
Transcript: NM_203445
Reaction
Expected peak: 184
22.9M
refseq_ABCB9.F1
refseq_ABCB9.R1
Expected peak: 184
22.9M
refseq_ABCB9.F1
refseq_ABCB9.R1
refseq_ABCB9.R4
AAGCTGCCATCGTGCACC
AAGCTGCCATCGTGCACC
refseq_ABCB9.F4
GAGCTTCGCCAATGAGGAG
GAGCTTCGCCAATGAGGAG
refseq_ABCB9.F1
TTGTCCTGGGAGATTGTATGG
TTGTCCTGGGAGATTGTATGG
refseq_ABCB9.R1
TACTTGTGGTCGTAGGCGCT
TACTTGTGGTCGTAGGCGCT