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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
Assay reliability
QPsi proof of principle
endpoint PCR
Transcript map
: BRCC3 Normal FF \n=1
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019254 E11) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019254 E9) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019254 E7) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019254 E5) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019254 E3) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019254 E1) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019255 E11) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019255 E9) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019255 E7) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019255 E5) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019255 E3) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019255 E1) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019256 E11) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019256 E9) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019256 E7) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019256 E5) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019256 E3) : Curve | Curve set
- refseq_BRCC3.F1 / refseq_BRCC3.R1 (CM019256 E1) : Curve | Curve set
Exon
Length: 216
Transcript: NM_001018055
Length: 216
Transcript: NM_001018055
Exon
Length: 17
Transcript: NM_001018055
Length: 17
Transcript: NM_001018055
Exon
Length: 55
Transcript: NM_001018055
Length: 55
Transcript: NM_001018055
Exon
Length: 121
Transcript: NM_001018055
Length: 121
Transcript: NM_001018055
Exon
Length: 87
Transcript: NM_001018055
Length: 87
Transcript: NM_001018055
Exon
Length: 89
Transcript: NM_001018055
Length: 89
Transcript: NM_001018055
Exon
Length: 56
Transcript: NM_001018055
Length: 56
Transcript: NM_001018055
Exon
Length: 132
Transcript: NM_001018055
Length: 132
Transcript: NM_001018055
Exon
Length: 44
Transcript: NM_001018055
Length: 44
Transcript: NM_001018055
Exon
Length: 170
Transcript: NM_001018055
Length: 170
Transcript: NM_001018055
Exon
Length: 1852
Transcript: NM_001018055
Length: 1852
Transcript: NM_001018055
Intron
Length: 676
Transcript: NM_001018055
Length: 676
Transcript: NM_001018055
Intron
Length: 1033
Transcript: NM_001018055
Length: 1033
Transcript: NM_001018055
Intron
Length: 3738
Transcript: NM_001018055
Length: 3738
Transcript: NM_001018055
Intron
Length: 1326
Transcript: NM_001018055
Length: 1326
Transcript: NM_001018055
Intron
Length: 10559
Transcript: NM_001018055
Length: 10559
Transcript: NM_001018055
Intron
Length: 1432
Transcript: NM_001018055
Length: 1432
Transcript: NM_001018055
Intron
Length: 25217
Transcript: NM_001018055
Length: 25217
Transcript: NM_001018055
Intron
Length: 522
Transcript: NM_001018055
Length: 522
Transcript: NM_001018055
Intron
Length: 3244
Transcript: NM_001018055
Length: 3244
Transcript: NM_001018055
Intron
Length: 1054
Transcript: NM_001018055
Length: 1054
Transcript: NM_001018055
Reaction
Expected peak: 104
0M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
0M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
0M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
0M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
227.89999M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
227.89999M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
167.39999M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
167.39999M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
52.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
52.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
104M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
104M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
171.60001M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
171.60001M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
231.39999M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
231.39999M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
100.7M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
100.7M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
68.3M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
68.3M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
127.6M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
127.6M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
82.5M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
82.5M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
111.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
111.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
182.39999M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
182.39999M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
77M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
77M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
66.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
66.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
86.9M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
86.9M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 104
66.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 104
66.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Exon
Length: 216
Transcript: NM_024332
Length: 216
Transcript: NM_024332
Exon
Length: 17
Transcript: NM_024332
Length: 17
Transcript: NM_024332
Exon
Length: 55
Transcript: NM_024332
Length: 55
Transcript: NM_024332
Exon
Length: 121
Transcript: NM_024332
Length: 121
Transcript: NM_024332
Exon
Length: 87
Transcript: NM_024332
Length: 87
Transcript: NM_024332
Exon
Length: 89
Transcript: NM_024332
Length: 89
Transcript: NM_024332
Exon
Length: 56
Transcript: NM_024332
Length: 56
Transcript: NM_024332
Exon
Length: 75
Transcript: NM_024332
Length: 75
Transcript: NM_024332
Exon
Length: 132
Transcript: NM_024332
Length: 132
Transcript: NM_024332
Exon
Length: 44
Transcript: NM_024332
Length: 44
Transcript: NM_024332
Exon
Length: 170
Transcript: NM_024332
Length: 170
Transcript: NM_024332
Exon
Length: 1852
Transcript: NM_024332
Length: 1852
Transcript: NM_024332
Intron
Length: 676
Transcript: NM_024332
Length: 676
Transcript: NM_024332
Intron
Length: 1033
Transcript: NM_024332
Length: 1033
Transcript: NM_024332
Intron
Length: 3738
Transcript: NM_024332
Length: 3738
Transcript: NM_024332
Intron
Length: 1326
Transcript: NM_024332
Length: 1326
Transcript: NM_024332
Intron
Length: 10559
Transcript: NM_024332
Length: 10559
Transcript: NM_024332
Intron
Length: 1432
Transcript: NM_024332
Length: 1432
Transcript: NM_024332
Intron
Length: 8475
Transcript: NM_024332
Length: 8475
Transcript: NM_024332
Intron
Length: 16667
Transcript: NM_024332
Length: 16667
Transcript: NM_024332
Intron
Length: 522
Transcript: NM_024332
Length: 522
Transcript: NM_024332
Intron
Length: 3244
Transcript: NM_024332
Length: 3244
Transcript: NM_024332
Intron
Length: 1054
Transcript: NM_024332
Length: 1054
Transcript: NM_024332
Reaction
Expected peak: 179
0M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
0M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
0M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
0M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
37.8M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
37.8M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
14.1M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
14.1M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
14.7M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
14.7M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
15.2M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
15.2M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
29.6M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
29.6M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
23.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
23.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
64.2M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
64.2M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
45.8M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
45.8M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
31.3M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
31.3M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
75.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
75.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
50.6M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
50.6M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
28.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
28.4M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
81.8M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
81.8M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
75.5M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
75.5M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
69.6M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
69.6M
refseq_BRCC3.F1
refseq_BRCC3.R1
Reaction
Expected peak: 179
113.2M
refseq_BRCC3.F1
refseq_BRCC3.R1
Expected peak: 179
113.2M
refseq_BRCC3.F1
refseq_BRCC3.R1
refseq_BRCC3.R1
GATTCAAGGCACACTTTCCC
GATTCAAGGCACACTTTCCC
refseq_BRCC3.F1
TGCTTCCAATCCATACAGGC
TGCTTCCAATCCATACAGGC