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Home Supplementary data Tumor microenvironment associated modifications of alternative splicing Undissected tissue screen Breast sample set RQ ASEs and QKI permalink
RQ ASEs and QKI ⚙
QPCR Primer Pair List : primer pair list
Gene Forward Reverse
VIEW APBB2 APBB2_cass_L_f APBB2_cass_L_r
VIEW APBB2 APBB2_cass_S_f APBB2_cass_S_r
VIEW ATP11C ATP11C_cass_L_1_f ATP11C_cass_L_2_r
VIEW ATP11C ATP11C_cass_S_2_f ATP11C_cass_S_1_r
VIEW CAST CAST_cass_L_2_f CAST_cass_L_4_r
VIEW CAST CAST_cass_S_3_f CAST_cass_S_3_r
VIEW CD46 CD46_cass_L_f CD46_cass_L_r
VIEW CD46 CD46_cass_S_f CD46_cass_S_r
VIEW FNIP1/FNIP1andRAPGEF6/RAPGEF6 KIAA1961_cass_L_f KIAA1961_cass_L_r
VIEW FNIP1/FNIP1andRAPGEF6/RAPGEF6 KIAA1961_cass_S_f KIAA1961_cass_S_r
VIEW ITGA6 ITGA6_L_f ITGA6_L_1_r
VIEW ITGA6 ITGA6_S_1_f ITGA6_S_r
VIEW MPRIP M-RIP_cass_L_f M-RIP_cass_L_1_r
VIEW MPRIP M-RIP_cass_S_f M-RIP_cass_S_1_r
VIEW PBRM1 PB1_cass_L_f PB1_cass_L_r
VIEW PBRM1 PB1_cass_S_f PB1_cass_S_r
VIEW QKI QKI.G1.F1 QKI.G1.R1
VIEW QKI QKI_long1_1_f QKI_long1_1_r
VIEW QKI QKI_long2_f QKI_long2_r
VIEW QKI QKI_long3_f QKI_long3_r
QPCR Primer Pair List : event list
Short Long
VIEW APBB2_cass_S_f APBB2_cass_S_r APBB2_cass_L_f APBB2_cass_L_r
VIEW ATP11C_cass_S_2_f ATP11C_cass_S_1_r ATP11C_cass_L_1_f ATP11C_cass_L_2_r
VIEW CAST_cass_S_3_f CAST_cass_S_3_r CAST_cass_L_2_f CAST_cass_L_4_r
VIEW CD46_cass_S_f CD46_cass_S_r CD46_cass_L_f CD46_cass_L_r
VIEW ITGA6_S_1_f ITGA6_S_r ITGA6_L_f ITGA6_L_1_r
VIEW KIAA1961_cass_S_f KIAA1961_cass_S_r KIAA1961_cass_L_f KIAA1961_cass_L_r
VIEW M-RIP_cass_S_f M-RIP_cass_S_1_r M-RIP_cass_L_f M-RIP_cass_L_1_r
VIEW PB1_cass_S_f PB1_cass_S_r PB1_cass_L_f PB1_cass_L_r
VIEW QKI_long1_1_f QKI_long1_1_r QKI_long2_f QKI_long2_r
VIEW QKI_long1_1_f QKI_long1_1_r QKI_long3_f QKI_long3_r
VIEW QKI_long2_f QKI_long2_r QKI_long3_f QKI_long3_r
QPCR Relative Expression Quantification : Summary

Expression Table

ID Name
1 BRC 117
2 BRC 125
3 BRC 129
4 BRC 138
5 BRC 141
6 BRC 149
7 BRC 169
8 BRC 200
9 BRC 206
10 BRC 333
11 BRC 369
12 BRC 423
13 BRC 426
14 BRC 440
15 BRC 525
16 BRC 540
17 BRC 67
18 BRC 69
19 BRC 78
20 BRC_489
Primer Pair S1 S2 S3 S4 S5 S6 S7 S8 S9 S10 S11 S12 S13 S14 S15 S16 S17 S18 S19 S20 S21 S22 S23 S24 S25 S26 S27 S28 S29 S30 S31 S32 S33 S34 S35 S36 S37 S38 S39
APBB2_cass_L_f APBB2_cass_L_r 0.022 1.919 0.689 2.143 4.020 1.250 2.317 1.349 1.357 1.407 0.463 0.024 0.314 0.063 0.021 0.039 0.015 0.026 0.630 0.777 1.000 1.605 0.005 2.502 3.087 0.649 0.730 6.088 1.026 2.549 6.865 10.917 2.687 8.234 1.655 5.626 4.779 2.231
APBB2_cass_S_f APBB2_cass_S_r 0.007 2.828 2.087 0.457 5.886 0.529 1.159 0.154 0.277 0.885 1.373 0.062 0.136 0.126 0.046 0.086 0.013 0.110 4.063 2.783 1.000 0.928 0.007 2.485 2.525 0.816 0.378 6.849 0.900 2.362 6.450 9.438 2.036 5.702 1.179 6.286 3.045 2.325
ATP11C_cass_L_1_f ATP11C_cass_L_2_r 0.036 4.500 6.829 1.347 0.682 3.537 1.250 6.328 2.849 1.268 7.768 0.023 0.764 0.032 0.055 0.051 0.162 0.013 1.104 0.772 1.000 1.135 0.014 1.595 4.188 0.886 0.777 7.977 1.123 1.729 4.315 4.818 1.995 2.268 1.655 4.797 2.009 2.325
ATP11C_cass_S_2_f ATP11C_cass_S_1_r 0.027 0.871 1.406 0.847 0.116 0.743 0.708 1.111 1.014 0.786 0.486 0.010 0.070 0.015 0.014 0.011 0.017 0.005 0.770 0.402 1.000 0.866 0.011 2.485 7.043 0.581 0.725 5.337 0.938 1.516 2.847 5.346 1.576 2.552 1.345 4.570 0.827 1.996
CAST_cass_L_2_f CAST_cass_L_4_r 0.090 0.460 0.033 0.168 0.499 0.158 0.227 0.237 0.196 0.464 0.020 0.190 0.056 0.475 0.269 0.328 0.133 0.087 0.088 0.211 1.000 1.234 0.288 1.467 2.687 0.516 0.788 3.826 1.644 2.713 1.789 2.582 0.581 1.267 0.417 2.994 0.524 2.231
CAST_cass_S_3_f CAST_cass_S_3_r 0.257 1.310 0.401 0.238 1.738 0.313 0.665 0.797 0.607 1.498 0.325 0.576 0.896 0.917 0.781 0.629 0.492 1.560 0.501 0.506 1.000 1.260 0.123 0.879 1.512 0.691 0.286 1.797 0.805 0.914 0.840 0.811 0.150 0.261 0.106 0.511 0.083 2.527
CD46_cass_L_f CD46_cass_L_r 0.841 3.864 0.981 0.847 0.986 3.026 0.836 0.522 1.191 2.000 1.447 1.679 1.439 0.889 2.107 0.904 1.755 1.940 1.119 0.699 0.857 1.000 0.541 0.372 1.407 2.763 1.004 1.062 0.810 2.277 1.094 3.202 3.384 1.219 2.679 1.237 6.553 0.524 3.726
CD46_cass_S_f CD46_cass_S_r 0.953 3.411 2.146 0.847 0.590 5.232 2.045 2.177 2.102 2.346 6.741 2.140 5.599 2.115 3.042 2.352 11.248 3.087 16.244 4.765 2.389 1.000 1.304 0.288 1.016 1.689 0.886 0.874 0.516 1.019 0.418 2.069 1.739 0.446 1.804 0.711 1.616 0.573 5.196
ITGA6_L_f ITGA6_L_1_r 0.042 3.758 0.288 1.918 0.499 2.269 1.233 11.250 4.532 0.694 0.573 0.034 0.544 0.133 0.044 0.080 0.018 0.069 0.556 0.188 1.000 1.639 0.004 2.468 5.120 0.627 1.523 6.897 1.799 4.000 5.239 5.932 3.354 6.972 2.081 6.832 3.723 3.804
ITGA6_S_1_f ITGA6_S_r 0.043 4.891 0.335 2.411 0.506 2.207 1.661 11.328 6.409 0.995 0.641 0.046 0.818 0.160 0.064 0.110 0.024 0.085 0.808 0.264 1.000 1.594 0.017 2.975 6.898 0.745 1.749 8.730 2.010 1.526 7.885 10.046 3.907 8.948 2.562 10.355 4.746 7.298
KIAA1961_cass_L_f KIAA1961_cass_L_r 0.412 4.317 13.471 10.336 66.134 5.250 8.412 6.877 11.006 16.369 9.901 0.073 1.880 0.584 0.239 0.987 0.381 0.198 13.954 4.489 1.000 1.378 0.008 4.510 0.495 1.823 0.414 8.669 0.763 14.613 21.238 1.372 4.412 3.220 3.015 1.326 2.765
KIAA1961_cass_S_f KIAA1961_cass_S_r 0.046 3.340 2.832 17.263 19.936 3.015 3.369 1.476 3.295 6.694 0.741 0.035 0.693 0.153 0.352 0.127 0.116 0.013 2.794 0.715 1.000 0.831 0.010 3.324 14.683 0.950 0.509 15.411 0.778 0.624 42.790 46.480 8.551 11.725 4.368 11.977 7.499 1.462
M-RIP_cass_L_f M-RIP_cass_L_1_r 0.824 1.000 0.156 0.173 0.762 0.282 0.604 1.349 0.637 0.759 0.128 0.475 0.216 0.771 0.512 0.928 0.397 0.501 0.249 0.238 1.000 0.916 0.267 0.501 2.153 0.397 0.845 2.687 1.577 1.945 1.728 1.578 0.924 1.377 0.520 3.661 0.794 3.405
M-RIP_cass_S_f M-RIP_cass_S_1_r 1.214 0.518 0.470 0.177 0.834 0.245 0.247 0.361 0.285 0.304 0.912 0.455 0.141 0.338 0.278 0.567 0.681 0.265 0.230 0.167 1.000 0.848 0.326 0.961 0.542 0.911 0.705 0.581 0.314 0.655 0.248 0.506 0.462 0.191 0.456 0.961 0.132 1.264
PB1_cass_L_f PB1_cass_L_r 2.809 2.888 2.482 1.777 3.524 2.382 0.974 4.292 3.053 0.280 2.246 3.128 3.893 2.979 3.956 2.332 3.473 2.383 1.178 1.000 1.709 0.087 1.341 1.981 0.301 0.593 1.400 0.984 0.219 1.999 2.360 0.152 0.308 0.034 0.203 0.055 1.610
PB1_cass_S_f PB1_cass_S_r 1.007 1.682 0.424 1.591 1.750 0.467 0.961 1.406 0.722 0.352 0.104 1.068 0.442 1.596 0.885 1.367 1.106 0.278 0.515 0.489 1.000 0.613 0.354 1.184 2.439 0.391 0.833 2.880 1.812 1.434 2.693 4.373 0.402 0.908 0.067 0.661 0.131 2.010
QKI.G1.F1 QKI.G1.R1 3.811 3.204 4.444 2.550 3.731 5.607 2.449 2.643 2.552 2.114 3.278 2.294 1.270 1.339 2.092 3.258 3.922 8.914 1.593 0.529 1.092 1.000 0.781 1.268 3.638 6.898 1.410 1.411 5.680 2.024 1.765 6.540 8.217 3.130 6.283 1.941 7.024 3.936 2.096
QKI_long1_1_f QKI_long1_1_r 0.973 1.778 1.207 0.480 1.610 0.418 0.480 1.037 0.483 0.501 0.912 0.735 0.536 0.564 0.652 0.427 1.533 0.344 0.259 0.400 1.000 0.955 0.203 0.522 2.168 0.557 1.115 2.123 1.799 0.543 1.283 1.384 0.502 0.718 0.577 2.117 0.542 2.653
QKI_long2_f QKI_long2_r 2.330 3.138 1.649 8.166 3.777 0.723 0.786 1.058 1.110 1.127 0.663 2.007 0.796 2.181 4.870 3.056 3.378 0.921 1.135 0.893 1.000 0.498 0.087 1.733 5.374 0.402 2.153 0.937 4.369 0.727 4.787 5.651 0.681 1.088 0.130 1.895 0.411 0.762
QKI_long3_f QKI_long3_r 2.809 2.297 3.014 1.613 3.993 1.104 2.060 1.182 0.364 0.885 0.341 1.361 0.377 1.952 3.874 2.237 3.065 0.652 0.684 1.245 1.000 1.097 0.560 0.891 9.488 1.186 0.805 7.042 2.984 2.496 6.361 5.384 1.122 2.517 2.095 7.528 1.786 2.441
QPCR QPSI
QPCR Relative Expression Quantification : Systematic Outlier Filtering

0 technical replicates removed (absolute Ct threshold 0.75; MADZ 3.5)

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0 biological replicates removed (relative expression threshold 0.25; MADZ 2.1)

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QPCR Reference Gene Page : .

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