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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RefSeq ASE screen
RefSeq Ovary Detection Screen
Transcript map
: ABCC9 FAL (VOA 863)
Exon
Length: 142
Transcript: NM_005691
Length: 142
Transcript: NM_005691
Exon
Length: 142
Transcript: NM_005691
Length: 142
Transcript: NM_005691
Exon
Length: 122
Transcript: NM_005691
Length: 122
Transcript: NM_005691
Exon
Length: 167
Transcript: NM_005691
Length: 167
Transcript: NM_005691
Exon
Length: 243
Transcript: NM_005691
Length: 243
Transcript: NM_005691
Exon
Length: 195
Transcript: NM_005691
Length: 195
Transcript: NM_005691
Exon
Length: 153
Transcript: NM_005691
Length: 153
Transcript: NM_005691
Exon
Length: 156
Transcript: NM_005691
Length: 156
Transcript: NM_005691
Exon
Length: 135
Transcript: NM_005691
Length: 135
Transcript: NM_005691
Exon
Length: 163
Transcript: NM_005691
Length: 163
Transcript: NM_005691
Exon
Length: 41
Transcript: NM_005691
Length: 41
Transcript: NM_005691
Exon
Length: 143
Transcript: NM_005691
Length: 143
Transcript: NM_005691
Exon
Length: 109
Transcript: NM_005691
Length: 109
Transcript: NM_005691
Exon
Length: 108
Transcript: NM_005691
Length: 108
Transcript: NM_005691
Exon
Length: 73
Transcript: NM_005691
Length: 73
Transcript: NM_005691
Exon
Length: 106
Transcript: NM_005691
Length: 106
Transcript: NM_005691
Exon
Length: 39
Transcript: NM_005691
Length: 39
Transcript: NM_005691
Exon
Length: 102
Transcript: NM_005691
Length: 102
Transcript: NM_005691
Exon
Length: 85
Transcript: NM_005691
Length: 85
Transcript: NM_005691
Exon
Length: 81
Transcript: NM_005691
Length: 81
Transcript: NM_005691
Exon
Length: 138
Transcript: NM_005691
Length: 138
Transcript: NM_005691
Exon
Length: 126
Transcript: NM_005691
Length: 126
Transcript: NM_005691
Exon
Length: 97
Transcript: NM_005691
Length: 97
Transcript: NM_005691
Exon
Length: 230
Transcript: NM_005691
Length: 230
Transcript: NM_005691
Exon
Length: 149
Transcript: NM_005691
Length: 149
Transcript: NM_005691
Exon
Length: 70
Transcript: NM_005691
Length: 70
Transcript: NM_005691
Exon
Length: 158
Transcript: NM_005691
Length: 158
Transcript: NM_005691
Exon
Length: 93
Transcript: NM_005691
Length: 93
Transcript: NM_005691
Exon
Length: 103
Transcript: NM_005691
Length: 103
Transcript: NM_005691
Exon
Length: 102
Transcript: NM_005691
Length: 102
Transcript: NM_005691
Exon
Length: 121
Transcript: NM_005691
Length: 121
Transcript: NM_005691
Exon
Length: 131
Transcript: NM_005691
Length: 131
Transcript: NM_005691
Exon
Length: 79
Transcript: NM_005691
Length: 79
Transcript: NM_005691
Exon
Length: 109
Transcript: NM_005691
Length: 109
Transcript: NM_005691
Exon
Length: 104
Transcript: NM_005691
Length: 104
Transcript: NM_005691
Exon
Length: 134
Transcript: NM_005691
Length: 134
Transcript: NM_005691
Exon
Length: 63
Transcript: NM_005691
Length: 63
Transcript: NM_005691
Exon
Length: 138
Transcript: NM_005691
Length: 138
Transcript: NM_005691
Intron
Length: 2609
Transcript: NM_005691
Length: 2609
Transcript: NM_005691
Intron
Length: 7718
Transcript: NM_005691
Length: 7718
Transcript: NM_005691
Intron
Length: 8838
Transcript: NM_005691
Length: 8838
Transcript: NM_005691
Intron
Length: 1026
Transcript: NM_005691
Length: 1026
Transcript: NM_005691
Intron
Length: 2601
Transcript: NM_005691
Length: 2601
Transcript: NM_005691
Intron
Length: 1893
Transcript: NM_005691
Length: 1893
Transcript: NM_005691
Intron
Length: 513
Transcript: NM_005691
Length: 513
Transcript: NM_005691
Intron
Length: 1945
Transcript: NM_005691
Length: 1945
Transcript: NM_005691
Intron
Length: 1788
Transcript: NM_005691
Length: 1788
Transcript: NM_005691
Intron
Length: 10810
Transcript: NM_005691
Length: 10810
Transcript: NM_005691
Intron
Length: 1100
Transcript: NM_005691
Length: 1100
Transcript: NM_005691
Intron
Length: 6097
Transcript: NM_005691
Length: 6097
Transcript: NM_005691
Intron
Length: 4952
Transcript: NM_005691
Length: 4952
Transcript: NM_005691
Intron
Length: 7039
Transcript: NM_005691
Length: 7039
Transcript: NM_005691
Intron
Length: 2923
Transcript: NM_005691
Length: 2923
Transcript: NM_005691
Intron
Length: 8147
Transcript: NM_005691
Length: 8147
Transcript: NM_005691
Intron
Length: 1384
Transcript: NM_005691
Length: 1384
Transcript: NM_005691
Intron
Length: 1897
Transcript: NM_005691
Length: 1897
Transcript: NM_005691
Intron
Length: 1304
Transcript: NM_005691
Length: 1304
Transcript: NM_005691
Intron
Length: 7080
Transcript: NM_005691
Length: 7080
Transcript: NM_005691
Intron
Length: 145
Transcript: NM_005691
Length: 145
Transcript: NM_005691
Intron
Length: 3850
Transcript: NM_005691
Length: 3850
Transcript: NM_005691
Intron
Length: 2317
Transcript: NM_005691
Length: 2317
Transcript: NM_005691
Intron
Length: 687
Transcript: NM_005691
Length: 687
Transcript: NM_005691
Intron
Length: 214
Transcript: NM_005691
Length: 214
Transcript: NM_005691
Intron
Length: 2011
Transcript: NM_005691
Length: 2011
Transcript: NM_005691
Intron
Length: 4143
Transcript: NM_005691
Length: 4143
Transcript: NM_005691
Intron
Length: 9017
Transcript: NM_005691
Length: 9017
Transcript: NM_005691
Intron
Length: 10706
Transcript: NM_005691
Length: 10706
Transcript: NM_005691
Intron
Length: 842
Transcript: NM_005691
Length: 842
Transcript: NM_005691
Intron
Length: 1293
Transcript: NM_005691
Length: 1293
Transcript: NM_005691
Intron
Length: 1040
Transcript: NM_005691
Length: 1040
Transcript: NM_005691
Intron
Length: 2486
Transcript: NM_005691
Length: 2486
Transcript: NM_005691
Intron
Length: 2093
Transcript: NM_005691
Length: 2093
Transcript: NM_005691
Intron
Length: 2372
Transcript: NM_005691
Length: 2372
Transcript: NM_005691
Intron
Length: 1285
Transcript: NM_005691
Length: 1285
Transcript: NM_005691
Intron
Length: 686
Transcript: NM_005691
Length: 686
Transcript: NM_005691
Reaction
Expected peak: 344
77.5M
refseq_ABCC9.F2
refseq_ABCC9.R2
Expected peak: 344
77.5M
refseq_ABCC9.F2
refseq_ABCC9.R2
Exon
Length: 142
Transcript: NM_020297
Length: 142
Transcript: NM_020297
Exon
Length: 142
Transcript: NM_020297
Length: 142
Transcript: NM_020297
Exon
Length: 122
Transcript: NM_020297
Length: 122
Transcript: NM_020297
Exon
Length: 167
Transcript: NM_020297
Length: 167
Transcript: NM_020297
Exon
Length: 243
Transcript: NM_020297
Length: 243
Transcript: NM_020297
Exon
Length: 195
Transcript: NM_020297
Length: 195
Transcript: NM_020297
Exon
Length: 153
Transcript: NM_020297
Length: 153
Transcript: NM_020297
Exon
Length: 156
Transcript: NM_020297
Length: 156
Transcript: NM_020297
Exon
Length: 135
Transcript: NM_020297
Length: 135
Transcript: NM_020297
Exon
Length: 163
Transcript: NM_020297
Length: 163
Transcript: NM_020297
Exon
Length: 41
Transcript: NM_020297
Length: 41
Transcript: NM_020297
Exon
Length: 143
Transcript: NM_020297
Length: 143
Transcript: NM_020297
Exon
Length: 109
Transcript: NM_020297
Length: 109
Transcript: NM_020297
Exon
Length: 108
Transcript: NM_020297
Length: 108
Transcript: NM_020297
Exon
Length: 73
Transcript: NM_020297
Length: 73
Transcript: NM_020297
Exon
Length: 106
Transcript: NM_020297
Length: 106
Transcript: NM_020297
Exon
Length: 39
Transcript: NM_020297
Length: 39
Transcript: NM_020297
Exon
Length: 102
Transcript: NM_020297
Length: 102
Transcript: NM_020297
Exon
Length: 85
Transcript: NM_020297
Length: 85
Transcript: NM_020297
Exon
Length: 81
Transcript: NM_020297
Length: 81
Transcript: NM_020297
Exon
Length: 138
Transcript: NM_020297
Length: 138
Transcript: NM_020297
Exon
Length: 126
Transcript: NM_020297
Length: 126
Transcript: NM_020297
Exon
Length: 97
Transcript: NM_020297
Length: 97
Transcript: NM_020297
Exon
Length: 230
Transcript: NM_020297
Length: 230
Transcript: NM_020297
Exon
Length: 149
Transcript: NM_020297
Length: 149
Transcript: NM_020297
Exon
Length: 70
Transcript: NM_020297
Length: 70
Transcript: NM_020297
Exon
Length: 158
Transcript: NM_020297
Length: 158
Transcript: NM_020297
Exon
Length: 93
Transcript: NM_020297
Length: 93
Transcript: NM_020297
Exon
Length: 103
Transcript: NM_020297
Length: 103
Transcript: NM_020297
Exon
Length: 102
Transcript: NM_020297
Length: 102
Transcript: NM_020297
Exon
Length: 121
Transcript: NM_020297
Length: 121
Transcript: NM_020297
Exon
Length: 131
Transcript: NM_020297
Length: 131
Transcript: NM_020297
Exon
Length: 79
Transcript: NM_020297
Length: 79
Transcript: NM_020297
Exon
Length: 109
Transcript: NM_020297
Length: 109
Transcript: NM_020297
Exon
Length: 104
Transcript: NM_020297
Length: 104
Transcript: NM_020297
Exon
Length: 134
Transcript: NM_020297
Length: 134
Transcript: NM_020297
Exon
Length: 63
Transcript: NM_020297
Length: 63
Transcript: NM_020297
Exon
Length: 138
Transcript: NM_020297
Length: 138
Transcript: NM_020297
Intron
Length: 2609
Transcript: NM_020297
Length: 2609
Transcript: NM_020297
Intron
Length: 7718
Transcript: NM_020297
Length: 7718
Transcript: NM_020297
Intron
Length: 8838
Transcript: NM_020297
Length: 8838
Transcript: NM_020297
Intron
Length: 1026
Transcript: NM_020297
Length: 1026
Transcript: NM_020297
Intron
Length: 2601
Transcript: NM_020297
Length: 2601
Transcript: NM_020297
Intron
Length: 1893
Transcript: NM_020297
Length: 1893
Transcript: NM_020297
Intron
Length: 513
Transcript: NM_020297
Length: 513
Transcript: NM_020297
Intron
Length: 1945
Transcript: NM_020297
Length: 1945
Transcript: NM_020297
Intron
Length: 1788
Transcript: NM_020297
Length: 1788
Transcript: NM_020297
Intron
Length: 10810
Transcript: NM_020297
Length: 10810
Transcript: NM_020297
Intron
Length: 1100
Transcript: NM_020297
Length: 1100
Transcript: NM_020297
Intron
Length: 6097
Transcript: NM_020297
Length: 6097
Transcript: NM_020297
Intron
Length: 4952
Transcript: NM_020297
Length: 4952
Transcript: NM_020297
Intron
Length: 7039
Transcript: NM_020297
Length: 7039
Transcript: NM_020297
Intron
Length: 2923
Transcript: NM_020297
Length: 2923
Transcript: NM_020297
Intron
Length: 8147
Transcript: NM_020297
Length: 8147
Transcript: NM_020297
Intron
Length: 1384
Transcript: NM_020297
Length: 1384
Transcript: NM_020297
Intron
Length: 1897
Transcript: NM_020297
Length: 1897
Transcript: NM_020297
Intron
Length: 1304
Transcript: NM_020297
Length: 1304
Transcript: NM_020297
Intron
Length: 7080
Transcript: NM_020297
Length: 7080
Transcript: NM_020297
Intron
Length: 145
Transcript: NM_020297
Length: 145
Transcript: NM_020297
Intron
Length: 3850
Transcript: NM_020297
Length: 3850
Transcript: NM_020297
Intron
Length: 2317
Transcript: NM_020297
Length: 2317
Transcript: NM_020297
Intron
Length: 687
Transcript: NM_020297
Length: 687
Transcript: NM_020297
Intron
Length: 214
Transcript: NM_020297
Length: 214
Transcript: NM_020297
Intron
Length: 2011
Transcript: NM_020297
Length: 2011
Transcript: NM_020297
Intron
Length: 4143
Transcript: NM_020297
Length: 4143
Transcript: NM_020297
Intron
Length: 9017
Transcript: NM_020297
Length: 9017
Transcript: NM_020297
Intron
Length: 10706
Transcript: NM_020297
Length: 10706
Transcript: NM_020297
Intron
Length: 842
Transcript: NM_020297
Length: 842
Transcript: NM_020297
Intron
Length: 1293
Transcript: NM_020297
Length: 1293
Transcript: NM_020297
Intron
Length: 1040
Transcript: NM_020297
Length: 1040
Transcript: NM_020297
Intron
Length: 2486
Transcript: NM_020297
Length: 2486
Transcript: NM_020297
Intron
Length: 2093
Transcript: NM_020297
Length: 2093
Transcript: NM_020297
Intron
Length: 2372
Transcript: NM_020297
Length: 2372
Transcript: NM_020297
Intron
Length: 1285
Transcript: NM_020297
Length: 1285
Transcript: NM_020297
Intron
Length: 4816
Transcript: NM_020297
Length: 4816
Transcript: NM_020297
Reaction
Expected peak: 344
77.5M
refseq_ABCC9.F2
refseq_ABCC9.R2
Expected peak: 344
77.5M
refseq_ABCC9.F2
refseq_ABCC9.R2
Exon
Length: 142
Transcript: NM_020298
Length: 142
Transcript: NM_020298
Exon
Length: 142
Transcript: NM_020298
Length: 142
Transcript: NM_020298
Exon
Length: 122
Transcript: NM_020298
Length: 122
Transcript: NM_020298
Exon
Length: 167
Transcript: NM_020298
Length: 167
Transcript: NM_020298
Exon
Length: 243
Transcript: NM_020298
Length: 243
Transcript: NM_020298
Exon
Length: 195
Transcript: NM_020298
Length: 195
Transcript: NM_020298
Exon
Length: 153
Transcript: NM_020298
Length: 153
Transcript: NM_020298
Exon
Length: 156
Transcript: NM_020298
Length: 156
Transcript: NM_020298
Exon
Length: 135
Transcript: NM_020298
Length: 135
Transcript: NM_020298
Exon
Length: 163
Transcript: NM_020298
Length: 163
Transcript: NM_020298
Exon
Length: 41
Transcript: NM_020298
Length: 41
Transcript: NM_020298
Exon
Length: 143
Transcript: NM_020298
Length: 143
Transcript: NM_020298
Exon
Length: 109
Transcript: NM_020298
Length: 109
Transcript: NM_020298
Exon
Length: 73
Transcript: NM_020298
Length: 73
Transcript: NM_020298
Exon
Length: 106
Transcript: NM_020298
Length: 106
Transcript: NM_020298
Exon
Length: 39
Transcript: NM_020298
Length: 39
Transcript: NM_020298
Exon
Length: 102
Transcript: NM_020298
Length: 102
Transcript: NM_020298
Exon
Length: 85
Transcript: NM_020298
Length: 85
Transcript: NM_020298
Exon
Length: 81
Transcript: NM_020298
Length: 81
Transcript: NM_020298
Exon
Length: 138
Transcript: NM_020298
Length: 138
Transcript: NM_020298
Exon
Length: 126
Transcript: NM_020298
Length: 126
Transcript: NM_020298
Exon
Length: 97
Transcript: NM_020298
Length: 97
Transcript: NM_020298
Exon
Length: 230
Transcript: NM_020298
Length: 230
Transcript: NM_020298
Exon
Length: 149
Transcript: NM_020298
Length: 149
Transcript: NM_020298
Exon
Length: 70
Transcript: NM_020298
Length: 70
Transcript: NM_020298
Exon
Length: 158
Transcript: NM_020298
Length: 158
Transcript: NM_020298
Exon
Length: 93
Transcript: NM_020298
Length: 93
Transcript: NM_020298
Exon
Length: 103
Transcript: NM_020298
Length: 103
Transcript: NM_020298
Exon
Length: 102
Transcript: NM_020298
Length: 102
Transcript: NM_020298
Exon
Length: 121
Transcript: NM_020298
Length: 121
Transcript: NM_020298
Exon
Length: 131
Transcript: NM_020298
Length: 131
Transcript: NM_020298
Exon
Length: 79
Transcript: NM_020298
Length: 79
Transcript: NM_020298
Exon
Length: 109
Transcript: NM_020298
Length: 109
Transcript: NM_020298
Exon
Length: 104
Transcript: NM_020298
Length: 104
Transcript: NM_020298
Exon
Length: 134
Transcript: NM_020298
Length: 134
Transcript: NM_020298
Exon
Length: 63
Transcript: NM_020298
Length: 63
Transcript: NM_020298
Exon
Length: 138
Transcript: NM_020298
Length: 138
Transcript: NM_020298
Intron
Length: 2609
Transcript: NM_020298
Length: 2609
Transcript: NM_020298
Intron
Length: 7718
Transcript: NM_020298
Length: 7718
Transcript: NM_020298
Intron
Length: 8838
Transcript: NM_020298
Length: 8838
Transcript: NM_020298
Intron
Length: 1026
Transcript: NM_020298
Length: 1026
Transcript: NM_020298
Intron
Length: 2601
Transcript: NM_020298
Length: 2601
Transcript: NM_020298
Intron
Length: 1893
Transcript: NM_020298
Length: 1893
Transcript: NM_020298
Intron
Length: 513
Transcript: NM_020298
Length: 513
Transcript: NM_020298
Intron
Length: 1945
Transcript: NM_020298
Length: 1945
Transcript: NM_020298
Intron
Length: 1788
Transcript: NM_020298
Length: 1788
Transcript: NM_020298
Intron
Length: 10810
Transcript: NM_020298
Length: 10810
Transcript: NM_020298
Intron
Length: 1100
Transcript: NM_020298
Length: 1100
Transcript: NM_020298
Intron
Length: 6097
Transcript: NM_020298
Length: 6097
Transcript: NM_020298
Intron
Length: 12099
Transcript: NM_020298
Length: 12099
Transcript: NM_020298
Intron
Length: 2923
Transcript: NM_020298
Length: 2923
Transcript: NM_020298
Intron
Length: 8147
Transcript: NM_020298
Length: 8147
Transcript: NM_020298
Intron
Length: 1384
Transcript: NM_020298
Length: 1384
Transcript: NM_020298
Intron
Length: 1897
Transcript: NM_020298
Length: 1897
Transcript: NM_020298
Intron
Length: 1304
Transcript: NM_020298
Length: 1304
Transcript: NM_020298
Intron
Length: 7080
Transcript: NM_020298
Length: 7080
Transcript: NM_020298
Intron
Length: 145
Transcript: NM_020298
Length: 145
Transcript: NM_020298
Intron
Length: 3850
Transcript: NM_020298
Length: 3850
Transcript: NM_020298
Intron
Length: 2317
Transcript: NM_020298
Length: 2317
Transcript: NM_020298
Intron
Length: 687
Transcript: NM_020298
Length: 687
Transcript: NM_020298
Intron
Length: 214
Transcript: NM_020298
Length: 214
Transcript: NM_020298
Intron
Length: 2011
Transcript: NM_020298
Length: 2011
Transcript: NM_020298
Intron
Length: 4143
Transcript: NM_020298
Length: 4143
Transcript: NM_020298
Intron
Length: 9017
Transcript: NM_020298
Length: 9017
Transcript: NM_020298
Intron
Length: 10706
Transcript: NM_020298
Length: 10706
Transcript: NM_020298
Intron
Length: 842
Transcript: NM_020298
Length: 842
Transcript: NM_020298
Intron
Length: 1293
Transcript: NM_020298
Length: 1293
Transcript: NM_020298
Intron
Length: 1040
Transcript: NM_020298
Length: 1040
Transcript: NM_020298
Intron
Length: 2486
Transcript: NM_020298
Length: 2486
Transcript: NM_020298
Intron
Length: 2093
Transcript: NM_020298
Length: 2093
Transcript: NM_020298
Intron
Length: 2372
Transcript: NM_020298
Length: 2372
Transcript: NM_020298
Intron
Length: 1285
Transcript: NM_020298
Length: 1285
Transcript: NM_020298
Intron
Length: 686
Transcript: NM_020298
Length: 686
Transcript: NM_020298
Reaction
Expected peak: 236
0M
refseq_ABCC9.F2
refseq_ABCC9.R2
Expected peak: 236
0M
refseq_ABCC9.F2
refseq_ABCC9.R2
refseq_ABCC9.R2
GGCCCACAATCATGGTTAAC
GGCCCACAATCATGGTTAAC
refseq_ABCC9.F2
GGTCAGATTTGCAGTCAAAGC
GGTCAGATTTGCAGTCAAAGC