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Home Supplementary data Tumor microenvironment associated modifications of alternative splicing RefSeq ASE screen LCM Discovery sample set epithelial signature permalink
LCM Discovery sample set epithelial signature ⚙
QPCR Primer Pair List : primer pair list
Gene Forward Reverse
VIEW ABCB9 ABCB9_cass_L_f ABCB9_cass_L_r
VIEW ABCB9 ABCB9_cass_S_f ABCB9_cass_S_r
VIEW ABCD4 ABCD4_cass_L_2_f ABCD4_cass_L_2_r
VIEW ABCD4 ABCD4_cass_L_3_f ABCD4_cass_L_3_r
VIEW ABCD4 ABCD4_cass_S_2_f ABCD4_cass_S_1_r
VIEW ABCD4 ABCD4_cass_S_4_f ABCD4_cass_S_3_r
VIEW ABCG1 ABCG1_alt5_L_f ABCG1_alt5_L_r
VIEW ABCG1 ABCG1_alt5_S_f ABCG1_alt5_S_r
VIEW ABI1 ABI1_cass_L_5_f ABI1_cass_L_6_r
VIEW ABI1 ABI1_cass_S_3_f ABI1.S.R1
VIEW ABL2 ABL2_cass_S_1_f ABL2_cass_L_1_r
VIEW ABL2 ABL2_cass_S_f ABL2_cass_S_r
VIEW ABTB1 ABTB1_alt5_L_f ABTB1_alt5_S_r
VIEW ABTB1 ABTB1_alt5_S_f ABTB1_alt5_S_r
VIEW ACACA ACACA_cass_S_f ACACA_cass_L_r
VIEW ACACA ACACA_cass_S_f ACACA_cass_S_r
VIEW ACCN3 ACCN3_alt3_L_f ACCN3_alt3_L_r
VIEW ACCN3 ACCN3_alt3_S_f ACCN3_alt3_S_1_r
VIEW ACOT8 ACOT8_cass_L_1_f ACOT8_cass_L_1_r
VIEW ACOT8 ACOT8_cass_L_f ACOT8_cass_L_r
QPCR Primer Pair List : event list
Short Long
VIEW A2BP1_cass_S_f A2BP1_cass_S_r A2BP1_cass_L_f A2BP1_cass_L_1_r
VIEW ABCB9_cass_S_f ABCB9_cass_S_r ABCB9_cass_L_f ABCB9_cass_L_r
VIEW ABCD4_cass_S_2_f ABCD4_cass_S_1_r ABCD4_cass_L_2_f ABCD4_cass_L_2_r
VIEW ABCD4_cass_S_4_f ABCD4_cass_S_3_r ABCD4_cass_L_3_f ABCD4_cass_L_3_r
VIEW ABCG1_alt5_S_f ABCG1_alt5_S_r ABCG1_alt5_L_f ABCG1_alt5_L_r
VIEW ABI1_cass_S_3_f ABI1.S.R1 ABI1_cass_L_5_f ABI1_cass_L_6_r
VIEW ABL2_cass_S_f ABL2_cass_S_r ABL2_cass_S_1_f ABL2_cass_L_1_r
VIEW ABTB1_alt5_S_f ABTB1_alt5_S_r ABTB1_alt5_L_f ABTB1_alt5_S_r
VIEW ACACA_cass_S_f ACACA_cass_S_r ACACA_cass_S_f ACACA_cass_L_r
VIEW ACCN3_alt3_S_f ACCN3_alt3_S_1_r ACCN3_alt3_L_f ACCN3_alt3_L_r
VIEW ACOT8_cass_S_2_f ACOT8_cass_S_1_r ACOT8_cass_L_1_f ACOT8_cass_L_1_r
VIEW ACOT8_cass_S_f ACOT8_cass_S_r ACOT8_cass_L_f ACOT8_cass_L_r
VIEW ADAMTSL1_cass_S_f ADAMTSL1_cass_S_r ADAMTSL1_cass_L_1_f ADAMTSL1_cass_L_r
VIEW ADARB1_cass_S_1_f ADARB1_cass_S_2_r ADARB1_cass_L_2_f ADARB1_cass_L_r
VIEW ADARB1_cass_S_f ADARB1_cass_S_r ADARB1_cass_L_f ADARB1_cass_S_r
VIEW ADAR_alt5_S_f ADAR_alt5_S_r ADAR_alt5_L_f ADAR_alt5_L_r
VIEW ADCY6_cass_S_2_f ADCY6_cass_S_r ADCY6_cass_L_1_f ADCY6_cass_L_2_r
VIEW ADD2_cass_S_f ADD2_cass_S_r ADD2_cass_L_1_f ADD2_cass_S_r
VIEW ADD3_cass_S_f ADD3_cass_S_r ADD3_cass_L_f ADD3_cass_S_r
VIEW ADNP_cass_S_f ADNP_cass_S_r ADNP_cass_L_f ADNP_cass_L_r
QPCR Relative Expression Quantification (grouped) : Summary

Expression Table

ID Name
1 FT
2 OSG3
Primer Pair S1 p1 q1 S2 p2 q2
A2BP1_cass_L_f A2BP1_cass_L_1_r 1.000 1.720
A2BP1_cass_S_f A2BP1_cass_S_r 1.000 2.636 2.44e-01 6.71e-01
ABCB9_cass_L_f ABCB9_cass_L_r 1.000 0.536 6.42e-01 6.97e-01
ABCB9_cass_S_f ABCB9_cass_S_r 1.000
ABCD4_cass_L_2_f ABCD4_cass_L_2_r 1.000 0.773 4.83e-01 6.74e-01
ABCD4_cass_L_3_f ABCD4_cass_L_3_r 1.000 1.801 4.22e-01 6.71e-01
ABCD4_cass_S_2_f ABCD4_cass_S_1_r 1.000 1.850
ABCD4_cass_S_4_f ABCD4_cass_S_3_r 1.000 0.670 3.70e-01 6.71e-01
ABCG1_alt5_L_f ABCG1_alt5_L_r 1.000 0.280 4.29e-01 6.71e-01
ABCG1_alt5_S_f ABCG1_alt5_S_r 1.000 0.853 8.24e-01 7.13e-01
ABI1_cass_L_5_f ABI1_cass_L_6_r 1.000 0.698 5.16e-01 6.78e-01
ABI1_cass_S_3_f ABI1.S.R1 1.000 0.737 3.28e-01 6.71e-01
ABL2_cass_S_f ABL2_cass_S_r 1.000 1.918 5.79e-01 6.81e-01
ABTB1_alt5_L_f ABTB1_alt5_S_r 1.000 0.474 3.17e-01 6.71e-01
ABTB1_alt5_S_f ABTB1_alt5_S_r 1.000 1.169 8.35e-01 7.16e-01
ACCN3_alt3_L_f ACCN3_alt3_L_r 1.000 1.405 7.05e-01 7.04e-01
ACCN3_alt3_S_f ACCN3_alt3_S_1_r 1.000 1.387 5.55e-01 6.80e-01
ACOT8_cass_L_1_f ACOT8_cass_L_1_r 1.000 0.800 6.46e-01 6.97e-01
ACOT8_cass_L_f ACOT8_cass_L_r 1.000 0.702 4.69e-01 6.74e-01
ACOT8_cass_S_f ACOT8_cass_S_r 1.000 1.381 5.86e-01 6.81e-01
QPCR Relative Expression Quantification : Summary

Expression Table

ID Name
1 OVN 218 FTE
2 OVN 262 FTE
3 OVN 385 FTE
4 OVN 397 FTE
5 OVC 189 E
6 OVC 203 E
7 OVC 278 E
8 OVC 328 E
Primer Pair S1 S2 S3 S4 S5 S6 S7 S8
A2BP1_cass_L_f A2BP1_cass_L_1_r 1.000 0.100 2.152 0.967 3.663
A2BP1_cass_S_f A2BP1_cass_S_r 0.257 2.006 0.737 0.127 4.287 1.511 4.618
ABCB9_cass_L_f ABCB9_cass_L_r 1.736 0.264 0.477 0.390 0.598 0.679
ABCB9_cass_S_f ABCB9_cass_S_r 1.000
ABCD4_cass_L_2_f ABCD4_cass_L_2_r 1.422 1.045 1.035 0.498 0.519 0.475 0.620 1.477
ABCD4_cass_L_3_f ABCD4_cass_L_3_r 2.434 0.240 0.657 0.669 0.230 2.001 1.114 3.858
ABCD4_cass_S_2_f ABCD4_cass_S_1_r 1.000 1.459 1.775 0.792 3.375
ABCD4_cass_S_4_f ABCD4_cass_S_3_r 1.758 1.156 0.631 0.454 0.384 0.540 0.656 1.101
ABCG1_alt5_L_f ABCG1_alt5_L_r 1.579 0.421 0.294 0.264 0.475 0.088
ABCG1_alt5_S_f ABCG1_alt5_S_r 2.652 0.245 0.707 0.396 1.158 1.419 0.697 0.137
ABI1_cass_L_5_f ABI1_cass_L_6_r 2.209 0.489 0.787 0.514 0.598 0.877 0.720 0.598
ABI1_cass_S_3_f ABI1.S.R1 1.226 0.907 0.983 0.884 0.637 0.205 0.842 1.265
ABL2_cass_S_f ABL2_cass_S_r 1.357 0.643 0.730 3.107
ABTB1_alt5_L_f ABTB1_alt5_S_r 2.185 1.112 0.272 0.431 0.359 0.249 0.534 0.754
ABTB1_alt5_S_f ABTB1_alt5_S_r 2.291 0.634 0.283 0.792 0.454 0.948 0.260 3.013
ACCN3_alt3_L_f ACCN3_alt3_L_r 0.338 0.203 2.459 0.137 2.720 0.282 2.481
ACCN3_alt3_S_f ACCN3_alt3_S_1_r 0.754 0.510 1.735 1.134 0.733 2.295
ACOT8_cass_L_1_f ACOT8_cass_L_1_r 1.651 0.144 1.409 0.796 1.442 0.742 0.708 0.307
ACOT8_cass_L_f ACOT8_cass_L_r 1.954 0.647 0.310 1.090 0.953 0.545 0.653 0.656
ACOT8_cass_S_f ACOT8_cass_S_r 1.735 0.250 1.307 0.708 0.500 2.349 0.313 2.361
QPCR QPSI (grouped)
QPCR QPSI
QPCR Reference Gene Page : .

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