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Supplementary data
Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA
3. Array-288 -- RBM10 Knockdowns in SKOV-3 and PC-3
Transcript map
: ABCF1 CTRL PC3 exp38
Exon
Length: 168
Transcript: NM_001025091
Length: 168
Transcript: NM_001025091
Exon
Length: 47
Transcript: NM_001025091
Length: 47
Transcript: NM_001025091
Exon
Length: 96
Transcript: NM_001025091
Length: 96
Transcript: NM_001025091
Exon
Length: 127
Transcript: NM_001025091
Length: 127
Transcript: NM_001025091
Exon
Length: 38
Transcript: NM_001025091
Length: 38
Transcript: NM_001025091
Exon
Length: 108
Transcript: NM_001025091
Length: 108
Transcript: NM_001025091
Exon
Length: 75
Transcript: NM_001025091
Length: 75
Transcript: NM_001025091
Exon
Length: 114
Transcript: NM_001025091
Length: 114
Transcript: NM_001025091
Exon
Length: 114
Transcript: NM_001025091
Length: 114
Transcript: NM_001025091
Exon
Length: 123
Transcript: NM_001025091
Length: 123
Transcript: NM_001025091
Exon
Length: 101
Transcript: NM_001025091
Length: 101
Transcript: NM_001025091
Exon
Length: 86
Transcript: NM_001025091
Length: 86
Transcript: NM_001025091
Exon
Length: 140
Transcript: NM_001025091
Length: 140
Transcript: NM_001025091
Exon
Length: 149
Transcript: NM_001025091
Length: 149
Transcript: NM_001025091
Exon
Length: 84
Transcript: NM_001025091
Length: 84
Transcript: NM_001025091
Exon
Length: 125
Transcript: NM_001025091
Length: 125
Transcript: NM_001025091
Exon
Length: 113
Transcript: NM_001025091
Length: 113
Transcript: NM_001025091
Exon
Length: 172
Transcript: NM_001025091
Length: 172
Transcript: NM_001025091
Exon
Length: 75
Transcript: NM_001025091
Length: 75
Transcript: NM_001025091
Exon
Length: 71
Transcript: NM_001025091
Length: 71
Transcript: NM_001025091
Exon
Length: 33
Transcript: NM_001025091
Length: 33
Transcript: NM_001025091
Exon
Length: 169
Transcript: NM_001025091
Length: 169
Transcript: NM_001025091
Exon
Length: 65
Transcript: NM_001025091
Length: 65
Transcript: NM_001025091
Exon
Length: 73
Transcript: NM_001025091
Length: 73
Transcript: NM_001025091
Exon
Length: 998
Transcript: NM_001025091
Length: 998
Transcript: NM_001025091
Intron
Length: 5848
Transcript: NM_001025091
Length: 5848
Transcript: NM_001025091
Intron
Length: 362
Transcript: NM_001025091
Length: 362
Transcript: NM_001025091
Intron
Length: 162
Transcript: NM_001025091
Length: 162
Transcript: NM_001025091
Intron
Length: 145
Transcript: NM_001025091
Length: 145
Transcript: NM_001025091
Intron
Length: 84
Transcript: NM_001025091
Length: 84
Transcript: NM_001025091
Intron
Length: 1353
Transcript: NM_001025091
Length: 1353
Transcript: NM_001025091
Intron
Length: 400
Transcript: NM_001025091
Length: 400
Transcript: NM_001025091
Intron
Length: 1874
Transcript: NM_001025091
Length: 1874
Transcript: NM_001025091
Intron
Length: 558
Transcript: NM_001025091
Length: 558
Transcript: NM_001025091
Intron
Length: 419
Transcript: NM_001025091
Length: 419
Transcript: NM_001025091
Intron
Length: 96
Transcript: NM_001025091
Length: 96
Transcript: NM_001025091
Intron
Length: 301
Transcript: NM_001025091
Length: 301
Transcript: NM_001025091
Intron
Length: 86
Transcript: NM_001025091
Length: 86
Transcript: NM_001025091
Intron
Length: 693
Transcript: NM_001025091
Length: 693
Transcript: NM_001025091
Intron
Length: 214
Transcript: NM_001025091
Length: 214
Transcript: NM_001025091
Intron
Length: 196
Transcript: NM_001025091
Length: 196
Transcript: NM_001025091
Intron
Length: 142
Transcript: NM_001025091
Length: 142
Transcript: NM_001025091
Intron
Length: 168
Transcript: NM_001025091
Length: 168
Transcript: NM_001025091
Intron
Length: 92
Transcript: NM_001025091
Length: 92
Transcript: NM_001025091
Intron
Length: 2976
Transcript: NM_001025091
Length: 2976
Transcript: NM_001025091
Intron
Length: 85
Transcript: NM_001025091
Length: 85
Transcript: NM_001025091
Intron
Length: 174
Transcript: NM_001025091
Length: 174
Transcript: NM_001025091
Intron
Length: 92
Transcript: NM_001025091
Length: 92
Transcript: NM_001025091
Intron
Length: 156
Transcript: NM_001025091
Length: 156
Transcript: NM_001025091
Reaction
Expected peak: 249
73.3M
refseq_ABCF1.F2
refseq_ABCF1.R2
Expected peak: 249
73.3M
refseq_ABCF1.F2
refseq_ABCF1.R2
Exon
Length: 168
Transcript: NM_001090
Length: 168
Transcript: NM_001090
Exon
Length: 47
Transcript: NM_001090
Length: 47
Transcript: NM_001090
Exon
Length: 96
Transcript: NM_001090
Length: 96
Transcript: NM_001090
Exon
Length: 127
Transcript: NM_001090
Length: 127
Transcript: NM_001090
Exon
Length: 38
Transcript: NM_001090
Length: 38
Transcript: NM_001090
Exon
Length: 108
Transcript: NM_001090
Length: 108
Transcript: NM_001090
Exon
Length: 75
Transcript: NM_001090
Length: 75
Transcript: NM_001090
Exon
Length: 114
Transcript: NM_001090
Length: 114
Transcript: NM_001090
Exon
Length: 123
Transcript: NM_001090
Length: 123
Transcript: NM_001090
Exon
Length: 101
Transcript: NM_001090
Length: 101
Transcript: NM_001090
Exon
Length: 86
Transcript: NM_001090
Length: 86
Transcript: NM_001090
Exon
Length: 140
Transcript: NM_001090
Length: 140
Transcript: NM_001090
Exon
Length: 149
Transcript: NM_001090
Length: 149
Transcript: NM_001090
Exon
Length: 84
Transcript: NM_001090
Length: 84
Transcript: NM_001090
Exon
Length: 125
Transcript: NM_001090
Length: 125
Transcript: NM_001090
Exon
Length: 113
Transcript: NM_001090
Length: 113
Transcript: NM_001090
Exon
Length: 172
Transcript: NM_001090
Length: 172
Transcript: NM_001090
Exon
Length: 75
Transcript: NM_001090
Length: 75
Transcript: NM_001090
Exon
Length: 71
Transcript: NM_001090
Length: 71
Transcript: NM_001090
Exon
Length: 33
Transcript: NM_001090
Length: 33
Transcript: NM_001090
Exon
Length: 169
Transcript: NM_001090
Length: 169
Transcript: NM_001090
Exon
Length: 65
Transcript: NM_001090
Length: 65
Transcript: NM_001090
Exon
Length: 73
Transcript: NM_001090
Length: 73
Transcript: NM_001090
Exon
Length: 998
Transcript: NM_001090
Length: 998
Transcript: NM_001090
Intron
Length: 5848
Transcript: NM_001090
Length: 5848
Transcript: NM_001090
Intron
Length: 362
Transcript: NM_001090
Length: 362
Transcript: NM_001090
Intron
Length: 162
Transcript: NM_001090
Length: 162
Transcript: NM_001090
Intron
Length: 145
Transcript: NM_001090
Length: 145
Transcript: NM_001090
Intron
Length: 84
Transcript: NM_001090
Length: 84
Transcript: NM_001090
Intron
Length: 1353
Transcript: NM_001090
Length: 1353
Transcript: NM_001090
Intron
Length: 400
Transcript: NM_001090
Length: 400
Transcript: NM_001090
Intron
Length: 2546
Transcript: NM_001090
Length: 2546
Transcript: NM_001090
Intron
Length: 419
Transcript: NM_001090
Length: 419
Transcript: NM_001090
Intron
Length: 96
Transcript: NM_001090
Length: 96
Transcript: NM_001090
Intron
Length: 301
Transcript: NM_001090
Length: 301
Transcript: NM_001090
Intron
Length: 86
Transcript: NM_001090
Length: 86
Transcript: NM_001090
Intron
Length: 693
Transcript: NM_001090
Length: 693
Transcript: NM_001090
Intron
Length: 214
Transcript: NM_001090
Length: 214
Transcript: NM_001090
Intron
Length: 196
Transcript: NM_001090
Length: 196
Transcript: NM_001090
Intron
Length: 142
Transcript: NM_001090
Length: 142
Transcript: NM_001090
Intron
Length: 168
Transcript: NM_001090
Length: 168
Transcript: NM_001090
Intron
Length: 92
Transcript: NM_001090
Length: 92
Transcript: NM_001090
Intron
Length: 2976
Transcript: NM_001090
Length: 2976
Transcript: NM_001090
Intron
Length: 85
Transcript: NM_001090
Length: 85
Transcript: NM_001090
Intron
Length: 174
Transcript: NM_001090
Length: 174
Transcript: NM_001090
Intron
Length: 92
Transcript: NM_001090
Length: 92
Transcript: NM_001090
Intron
Length: 156
Transcript: NM_001090
Length: 156
Transcript: NM_001090
Reaction
Expected peak: 135
0M
refseq_ABCF1.F2
refseq_ABCF1.R2
Expected peak: 135
0M
refseq_ABCF1.F2
refseq_ABCF1.R2
refseq_ABCF1.R2
GAGGACATCTCCGCCTGG
GAGGACATCTCCGCCTGG
refseq_ABCF1.F2
AAAGGAGCCTCCCAAACAAG
AAAGGAGCCTCCCAAACAAG