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Supplementary data
Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA
3. Array-288 -- RBM10 Knockdowns in SKOV-3 and PC-3
Transcript map
: AP3M1 CTRL PC3 exp38
Exon
Length: 275
Transcript: NM_012095
Length: 275
Transcript: NM_012095
Exon
Length: 276
Transcript: NM_012095
Length: 276
Transcript: NM_012095
Exon
Length: 172
Transcript: NM_012095
Length: 172
Transcript: NM_012095
Exon
Length: 138
Transcript: NM_012095
Length: 138
Transcript: NM_012095
Exon
Length: 86
Transcript: NM_012095
Length: 86
Transcript: NM_012095
Exon
Length: 134
Transcript: NM_012095
Length: 134
Transcript: NM_012095
Exon
Length: 208
Transcript: NM_012095
Length: 208
Transcript: NM_012095
Exon
Length: 145
Transcript: NM_012095
Length: 145
Transcript: NM_012095
Exon
Length: 2153
Transcript: NM_012095
Length: 2153
Transcript: NM_012095
Intron
Length: 12372
Transcript: NM_012095
Length: 12372
Transcript: NM_012095
Intron
Length: 1303
Transcript: NM_012095
Length: 1303
Transcript: NM_012095
Intron
Length: 2467
Transcript: NM_012095
Length: 2467
Transcript: NM_012095
Intron
Length: 4034
Transcript: NM_012095
Length: 4034
Transcript: NM_012095
Intron
Length: 665
Transcript: NM_012095
Length: 665
Transcript: NM_012095
Intron
Length: 2752
Transcript: NM_012095
Length: 2752
Transcript: NM_012095
Intron
Length: 1623
Transcript: NM_012095
Length: 1623
Transcript: NM_012095
Intron
Length: 469
Transcript: NM_012095
Length: 469
Transcript: NM_012095
Reaction
Expected peak: 268
24.7M
refseq_AP3M1.F1
refseq_AP3M1.R1
Expected peak: 268
24.7M
refseq_AP3M1.F1
refseq_AP3M1.R1
Exon
Length: 275
Transcript: NM_207012
Length: 275
Transcript: NM_207012
Exon
Length: 126
Transcript: NM_207012
Length: 126
Transcript: NM_207012
Exon
Length: 276
Transcript: NM_207012
Length: 276
Transcript: NM_207012
Exon
Length: 172
Transcript: NM_207012
Length: 172
Transcript: NM_207012
Exon
Length: 138
Transcript: NM_207012
Length: 138
Transcript: NM_207012
Exon
Length: 86
Transcript: NM_207012
Length: 86
Transcript: NM_207012
Exon
Length: 134
Transcript: NM_207012
Length: 134
Transcript: NM_207012
Exon
Length: 208
Transcript: NM_207012
Length: 208
Transcript: NM_207012
Exon
Length: 145
Transcript: NM_207012
Length: 145
Transcript: NM_207012
Exon
Length: 2153
Transcript: NM_207012
Length: 2153
Transcript: NM_207012
Intron
Length: 11823
Transcript: NM_207012
Length: 11823
Transcript: NM_207012
Intron
Length: 423
Transcript: NM_207012
Length: 423
Transcript: NM_207012
Intron
Length: 1303
Transcript: NM_207012
Length: 1303
Transcript: NM_207012
Intron
Length: 2467
Transcript: NM_207012
Length: 2467
Transcript: NM_207012
Intron
Length: 4034
Transcript: NM_207012
Length: 4034
Transcript: NM_207012
Intron
Length: 665
Transcript: NM_207012
Length: 665
Transcript: NM_207012
Intron
Length: 2752
Transcript: NM_207012
Length: 2752
Transcript: NM_207012
Intron
Length: 1623
Transcript: NM_207012
Length: 1623
Transcript: NM_207012
Intron
Length: 469
Transcript: NM_207012
Length: 469
Transcript: NM_207012
Reaction
Expected peak: 394
19.1M
refseq_AP3M1.F1
refseq_AP3M1.R1
Expected peak: 394
19.1M
refseq_AP3M1.F1
refseq_AP3M1.R1
refseq_AP3M1.R1
ACTGGCTCACAACGCTCTTC
ACTGGCTCACAACGCTCTTC
refseq_AP3M1.F1
CTCTCATTTACGGTCTTCCTGC
CTCTCATTTACGGTCTTCCTGC