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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: AFF3
Exon
Length: 92
Transcript: AFF3.aAug05
Length: 92
Transcript: AFF3.aAug05
Exon
Length: 80
Transcript: AFF3.aAug05
Length: 80
Transcript: AFF3.aAug05
Exon
Length: 117
Transcript: AFF3.aAug05
Length: 117
Transcript: AFF3.aAug05
Exon
Length: 121
Transcript: AFF3.aAug05
Length: 121
Transcript: AFF3.aAug05
Exon
Length: 313
Transcript: AFF3.aAug05
Length: 313
Transcript: AFF3.aAug05
Exon
Length: 386
Transcript: AFF3.aAug05
Length: 386
Transcript: AFF3.aAug05
Exon
Length: 48
Transcript: AFF3.aAug05
Length: 48
Transcript: AFF3.aAug05
Exon
Length: 81
Transcript: AFF3.aAug05
Length: 81
Transcript: AFF3.aAug05
Exon
Length: 37
Transcript: AFF3.aAug05
Length: 37
Transcript: AFF3.aAug05
Exon
Length: 52
Transcript: AFF3.aAug05
Length: 52
Transcript: AFF3.aAug05
Exon
Length: 52
Transcript: AFF3.aAug05
Length: 52
Transcript: AFF3.aAug05
Exon
Length: 41
Transcript: AFF3.aAug05
Length: 41
Transcript: AFF3.aAug05
Exon
Length: 187
Transcript: AFF3.aAug05
Length: 187
Transcript: AFF3.aAug05
Exon
Length: 1095
Transcript: AFF3.aAug05
Length: 1095
Transcript: AFF3.aAug05
Exon
Length: 125
Transcript: AFF3.aAug05
Length: 125
Transcript: AFF3.aAug05
Exon
Length: 202
Transcript: AFF3.aAug05
Length: 202
Transcript: AFF3.aAug05
Exon
Length: 125
Transcript: AFF3.aAug05
Length: 125
Transcript: AFF3.aAug05
Exon
Length: 64
Transcript: AFF3.aAug05
Length: 64
Transcript: AFF3.aAug05
Exon
Length: 137
Transcript: AFF3.aAug05
Length: 137
Transcript: AFF3.aAug05
Exon
Length: 72
Transcript: AFF3.aAug05
Length: 72
Transcript: AFF3.aAug05
Exon
Length: 94
Transcript: AFF3.aAug05
Length: 94
Transcript: AFF3.aAug05
Exon
Length: 50
Transcript: AFF3.aAug05
Length: 50
Transcript: AFF3.aAug05
Exon
Length: 224
Transcript: AFF3.aAug05
Length: 224
Transcript: AFF3.aAug05
Exon
Length: 5118
Transcript: AFF3.aAug05
Length: 5118
Transcript: AFF3.aAug05
Intron
Length: 36900
Transcript: AFF3.aAug05
Length: 36900
Transcript: AFF3.aAug05
Intron
Length: 985
Transcript: AFF3.aAug05
Length: 985
Transcript: AFF3.aAug05
Intron
Length: 95469
Transcript: AFF3.aAug05
Length: 95469
Transcript: AFF3.aAug05
Intron
Length: 1351
Transcript: AFF3.aAug05
Length: 1351
Transcript: AFF3.aAug05
Intron
Length: 130
Transcript: AFF3.aAug05
Length: 130
Transcript: AFF3.aAug05
Intron
Length: 169107
Transcript: AFF3.aAug05
Length: 169107
Transcript: AFF3.aAug05
Intron
Length: 85175
Transcript: AFF3.aAug05
Length: 85175
Transcript: AFF3.aAug05
Intron
Length: 8080
Transcript: AFF3.aAug05
Length: 8080
Transcript: AFF3.aAug05
Intron
Length: 16975
Transcript: AFF3.aAug05
Length: 16975
Transcript: AFF3.aAug05
Intron
Length: 54487
Transcript: AFF3.aAug05
Length: 54487
Transcript: AFF3.aAug05
Intron
Length: 22871
Transcript: AFF3.aAug05
Length: 22871
Transcript: AFF3.aAug05
Intron
Length: 48004
Transcript: AFF3.aAug05
Length: 48004
Transcript: AFF3.aAug05
Intron
Length: 7145
Transcript: AFF3.aAug05
Length: 7145
Transcript: AFF3.aAug05
Intron
Length: 5916
Transcript: AFF3.aAug05
Length: 5916
Transcript: AFF3.aAug05
Intron
Length: 4154
Transcript: AFF3.aAug05
Length: 4154
Transcript: AFF3.aAug05
Intron
Length: 4346
Transcript: AFF3.aAug05
Length: 4346
Transcript: AFF3.aAug05
Intron
Length: 9411
Transcript: AFF3.aAug05
Length: 9411
Transcript: AFF3.aAug05
Intron
Length: 3228
Transcript: AFF3.aAug05
Length: 3228
Transcript: AFF3.aAug05
Intron
Length: 5050
Transcript: AFF3.aAug05
Length: 5050
Transcript: AFF3.aAug05
Intron
Length: 1396
Transcript: AFF3.aAug05
Length: 1396
Transcript: AFF3.aAug05
Intron
Length: 4142
Transcript: AFF3.aAug05
Length: 4142
Transcript: AFF3.aAug05
Intron
Length: 148
Transcript: AFF3.aAug05
Length: 148
Transcript: AFF3.aAug05
Intron
Length: 2715
Transcript: AFF3.aAug05
Length: 2715
Transcript: AFF3.aAug05
Reaction
Expected peak: 380
Associated peak: 392,393,394,395,396,397,398,399,400,403,407
Repeated 51 time
Molarity: 30.05M
Forward: AFF3.F2
Reverse: AFF3.R31
Expected peak: 380
Associated peak: 392,393,394,395,396,397,398,399,400,403,407
Repeated 51 time
Molarity: 30.05M
Forward: AFF3.F2
Reverse: AFF3.R31
Exon
Length: 89
Transcript: AFF3.bAug05
Length: 89
Transcript: AFF3.bAug05
Exon
Length: 80
Transcript: AFF3.bAug05
Length: 80
Transcript: AFF3.bAug05
Exon
Length: 117
Transcript: AFF3.bAug05
Length: 117
Transcript: AFF3.bAug05
Exon
Length: 75
Transcript: AFF3.bAug05
Length: 75
Transcript: AFF3.bAug05
Exon
Length: 121
Transcript: AFF3.bAug05
Length: 121
Transcript: AFF3.bAug05
Exon
Length: 313
Transcript: AFF3.bAug05
Length: 313
Transcript: AFF3.bAug05
Exon
Length: 386
Transcript: AFF3.bAug05
Length: 386
Transcript: AFF3.bAug05
Exon
Length: 48
Transcript: AFF3.bAug05
Length: 48
Transcript: AFF3.bAug05
Exon
Length: 81
Transcript: AFF3.bAug05
Length: 81
Transcript: AFF3.bAug05
Exon
Length: 37
Transcript: AFF3.bAug05
Length: 37
Transcript: AFF3.bAug05
Exon
Length: 52
Transcript: AFF3.bAug05
Length: 52
Transcript: AFF3.bAug05
Exon
Length: 52
Transcript: AFF3.bAug05
Length: 52
Transcript: AFF3.bAug05
Exon
Length: 41
Transcript: AFF3.bAug05
Length: 41
Transcript: AFF3.bAug05
Exon
Length: 187
Transcript: AFF3.bAug05
Length: 187
Transcript: AFF3.bAug05
Exon
Length: 1095
Transcript: AFF3.bAug05
Length: 1095
Transcript: AFF3.bAug05
Exon
Length: 125
Transcript: AFF3.bAug05
Length: 125
Transcript: AFF3.bAug05
Exon
Length: 15
Transcript: AFF3.bAug05
Length: 15
Transcript: AFF3.bAug05
Intron
Length: 456
Transcript: AFF3.bAug05
Length: 456
Transcript: AFF3.bAug05
Intron
Length: 985
Transcript: AFF3.bAug05
Length: 985
Transcript: AFF3.bAug05
Intron
Length: 92830
Transcript: AFF3.bAug05
Length: 92830
Transcript: AFF3.bAug05
Intron
Length: 2564
Transcript: AFF3.bAug05
Length: 2564
Transcript: AFF3.bAug05
Intron
Length: 1351
Transcript: AFF3.bAug05
Length: 1351
Transcript: AFF3.bAug05
Intron
Length: 130
Transcript: AFF3.bAug05
Length: 130
Transcript: AFF3.bAug05
Intron
Length: 169107
Transcript: AFF3.bAug05
Length: 169107
Transcript: AFF3.bAug05
Intron
Length: 85175
Transcript: AFF3.bAug05
Length: 85175
Transcript: AFF3.bAug05
Intron
Length: 8080
Transcript: AFF3.bAug05
Length: 8080
Transcript: AFF3.bAug05
Intron
Length: 16975
Transcript: AFF3.bAug05
Length: 16975
Transcript: AFF3.bAug05
Intron
Length: 54487
Transcript: AFF3.bAug05
Length: 54487
Transcript: AFF3.bAug05
Intron
Length: 22871
Transcript: AFF3.bAug05
Length: 22871
Transcript: AFF3.bAug05
Intron
Length: 48004
Transcript: AFF3.bAug05
Length: 48004
Transcript: AFF3.bAug05
Intron
Length: 7145
Transcript: AFF3.bAug05
Length: 7145
Transcript: AFF3.bAug05
Intron
Length: 5916
Transcript: AFF3.bAug05
Length: 5916
Transcript: AFF3.bAug05
Intron
Length: 4154
Transcript: AFF3.bAug05
Length: 4154
Transcript: AFF3.bAug05
Reaction
Expected peak: 455
Associated peak: 461,462,463,464,465,466,467,470,477,491
Repeated 51 time
Molarity: 3.30M
Forward: AFF3.F2
Reverse: AFF3.R31
Expected peak: 455
Associated peak: 461,462,463,464,465,466,467,470,477,491
Repeated 51 time
Molarity: 3.30M
Forward: AFF3.F2
Reverse: AFF3.R31
Exon
Length: 28
Transcript: AFF3.cAug05
Length: 28
Transcript: AFF3.cAug05
Exon
Length: 117
Transcript: AFF3.cAug05
Length: 117
Transcript: AFF3.cAug05
Exon
Length: 121
Transcript: AFF3.cAug05
Length: 121
Transcript: AFF3.cAug05
Exon
Length: 313
Transcript: AFF3.cAug05
Length: 313
Transcript: AFF3.cAug05
Exon
Length: 386
Transcript: AFF3.cAug05
Length: 386
Transcript: AFF3.cAug05
Exon
Length: 557
Transcript: AFF3.cAug05
Length: 557
Transcript: AFF3.cAug05
Intron
Length: 149
Transcript: AFF3.cAug05
Length: 149
Transcript: AFF3.cAug05
Intron
Length: 95469
Transcript: AFF3.cAug05
Length: 95469
Transcript: AFF3.cAug05
Intron
Length: 1351
Transcript: AFF3.cAug05
Length: 1351
Transcript: AFF3.cAug05
Intron
Length: 130
Transcript: AFF3.cAug05
Length: 130
Transcript: AFF3.cAug05
Intron
Length: 169107
Transcript: AFF3.cAug05
Length: 169107
Transcript: AFF3.cAug05
Reaction
Expected peak: 380
Associated peak: 392,393,394,395,396,397,398,399,400,403,407
Repeated 51 time
Molarity: 30.05M
Forward: AFF3.F2
Reverse: AFF3.R31
Expected peak: 380
Associated peak: 392,393,394,395,396,397,398,399,400,403,407
Repeated 51 time
Molarity: 30.05M
Forward: AFF3.F2
Reverse: AFF3.R31
Exon
Length: 804
Transcript: AFF3.dAug05
Length: 804
Transcript: AFF3.dAug05
Exon
Length: 1149
Transcript: AFF3.dAug05
Length: 1149
Transcript: AFF3.dAug05
Intron
Length: 130
Transcript: AFF3.dAug05
Length: 130
Transcript: AFF3.dAug05
Exon
Length: 392
Transcript: AFF3.eAug05
Length: 392
Transcript: AFF3.eAug05
Exon
Length: 372
Transcript: AFF3.eAug05
Length: 372
Transcript: AFF3.eAug05
Intron
Length: 5916
Transcript: AFF3.eAug05
Length: 5916
Transcript: AFF3.eAug05
Exon
Length: 23
Transcript: AFF3.fAug05
Length: 23
Transcript: AFF3.fAug05
Exon
Length: 83
Transcript: AFF3.fAug05
Length: 83
Transcript: AFF3.fAug05
Exon
Length: 80
Transcript: AFF3.fAug05
Length: 80
Transcript: AFF3.fAug05
Exon
Length: 117
Transcript: AFF3.fAug05
Length: 117
Transcript: AFF3.fAug05
Exon
Length: 121
Transcript: AFF3.fAug05
Length: 121
Transcript: AFF3.fAug05
Exon
Length: 266
Transcript: AFF3.fAug05
Length: 266
Transcript: AFF3.fAug05
Intron
Length: 13177
Transcript: AFF3.fAug05
Length: 13177
Transcript: AFF3.fAug05
Intron
Length: 23640
Transcript: AFF3.fAug05
Length: 23640
Transcript: AFF3.fAug05
Intron
Length: 985
Transcript: AFF3.fAug05
Length: 985
Transcript: AFF3.fAug05
Intron
Length: 95469
Transcript: AFF3.fAug05
Length: 95469
Transcript: AFF3.fAug05
Intron
Length: 1351
Transcript: AFF3.fAug05
Length: 1351
Transcript: AFF3.fAug05
Reaction
Expected peak: 380
Associated peak: 392,393,394,395,396,397,398,399,400,403,407
Repeated 51 time
Molarity: 30.05M
Forward: AFF3.F2
Reverse: AFF3.R31
Expected peak: 380
Associated peak: 392,393,394,395,396,397,398,399,400,403,407
Repeated 51 time
Molarity: 30.05M
Forward: AFF3.F2
Reverse: AFF3.R31
Exon
Length: 125
Transcript: AFF3.gAug05
Length: 125
Transcript: AFF3.gAug05
Exon
Length: 64
Transcript: AFF3.gAug05
Length: 64
Transcript: AFF3.gAug05
Exon
Length: 137
Transcript: AFF3.gAug05
Length: 137
Transcript: AFF3.gAug05
Exon
Length: 72
Transcript: AFF3.gAug05
Length: 72
Transcript: AFF3.gAug05
Exon
Length: 94
Transcript: AFF3.gAug05
Length: 94
Transcript: AFF3.gAug05
Exon
Length: 50
Transcript: AFF3.gAug05
Length: 50
Transcript: AFF3.gAug05
Exon
Length: 94
Transcript: AFF3.gAug05
Length: 94
Transcript: AFF3.gAug05
Intron
Length: 9411
Transcript: AFF3.gAug05
Length: 9411
Transcript: AFF3.gAug05
Intron
Length: 3228
Transcript: AFF3.gAug05
Length: 3228
Transcript: AFF3.gAug05
Intron
Length: 5050
Transcript: AFF3.gAug05
Length: 5050
Transcript: AFF3.gAug05
Intron
Length: 1396
Transcript: AFF3.gAug05
Length: 1396
Transcript: AFF3.gAug05
Intron
Length: 4142
Transcript: AFF3.gAug05
Length: 4142
Transcript: AFF3.gAug05
Intron
Length: 196
Transcript: AFF3.gAug05
Length: 196
Transcript: AFF3.gAug05
Exon
Length: 29
Transcript: AFF3.hAug05
Length: 29
Transcript: AFF3.hAug05
Exon
Length: 112
Transcript: AFF3.hAug05
Length: 112
Transcript: AFF3.hAug05
Exon
Length: 83
Transcript: AFF3.hAug05
Length: 83
Transcript: AFF3.hAug05
Exon
Length: 139
Transcript: AFF3.hAug05
Length: 139
Transcript: AFF3.hAug05
Exon
Length: 489
Transcript: AFF3.hAug05
Length: 489
Transcript: AFF3.hAug05
Intron
Length: 115
Transcript: AFF3.hAug05
Length: 115
Transcript: AFF3.hAug05
Intron
Length: 13177
Transcript: AFF3.hAug05
Length: 13177
Transcript: AFF3.hAug05
Intron
Length: 16699
Transcript: AFF3.hAug05
Length: 16699
Transcript: AFF3.hAug05
Intron
Length: 2052
Transcript: AFF3.hAug05
Length: 2052
Transcript: AFF3.hAug05
Exon
Length: 176
Transcript: AFF3.iAug05
Length: 176
Transcript: AFF3.iAug05
Exon
Length: 48
Transcript: AFF3.iAug05
Length: 48
Transcript: AFF3.iAug05
Exon
Length: 442
Transcript: AFF3.iAug05
Length: 442
Transcript: AFF3.iAug05
Intron
Length: 169107
Transcript: AFF3.iAug05
Length: 169107
Transcript: AFF3.iAug05
Intron
Length: 11540
Transcript: AFF3.iAug05
Length: 11540
Transcript: AFF3.iAug05
Exon
Length: 112
Transcript: AFF3.jAug05
Length: 112
Transcript: AFF3.jAug05
Exon
Length: 139
Transcript: AFF3.jAug05
Length: 139
Transcript: AFF3.jAug05
Exon
Length: 80
Transcript: AFF3.jAug05
Length: 80
Transcript: AFF3.jAug05
Exon
Length: 171
Transcript: AFF3.jAug05
Length: 171
Transcript: AFF3.jAug05
Intron
Length: 29959
Transcript: AFF3.jAug05
Length: 29959
Transcript: AFF3.jAug05
Intron
Length: 6802
Transcript: AFF3.jAug05
Length: 6802
Transcript: AFF3.jAug05
Intron
Length: 985
Transcript: AFF3.jAug05
Length: 985
Transcript: AFF3.jAug05
Exon
Length: 177
Transcript: AFF3.shed1.aAug05
Length: 177
Transcript: AFF3.shed1.aAug05
Exon
Length: 788
Transcript: AFF3.shed2.aAug05
Length: 788
Transcript: AFF3.shed2.aAug05
Exon
Length: 518
Transcript: AFF3.shed3.aAug05
Length: 518
Transcript: AFF3.shed3.aAug05
Exon
Length: 746
Transcript: AFF3.shed4.aAug05
Length: 746
Transcript: AFF3.shed4.aAug05
AFF3.F2
CATGGACAGCTTCGACTTAGC
CATGGACAGCTTCGACTTAGC
AFF3.R31
TACAGATAGACGAGGGCTGGTT
TACAGATAGACGAGGGCTGGTT