2. Breast Validation Screen - Rnomics 📊 Palace

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Home Public data LGFUS Public Data Identification of alternative splicing markers for breast cancer 2. Breast Validation Screen

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https://rnomics.med.usherbrooke.ca/palace?purl=/data/related/3/gene/433883

2. Breast Validation Screen ⚙

Transcript map : PLD1

Exon
Length: 153
Transcript: PLD1.aAug05

Exon
Length: 150
Transcript: PLD1.aAug05

Exon
Length: 84
Transcript: PLD1.aAug05

Exon
Length: 82
Transcript: PLD1.aAug05

Exon
Length: 111
Transcript: PLD1.aAug05

Exon
Length: 201
Transcript: PLD1.aAug05

Exon
Length: 214
Transcript: PLD1.aAug05

Exon
Length: 114
Transcript: PLD1.aAug05

Exon
Length: 129
Transcript: PLD1.aAug05

Exon
Length: 119
Transcript: PLD1.aAug05

Exon
Length: 114
Transcript: PLD1.aAug05

Exon
Length: 111
Transcript: PLD1.aAug05

Exon
Length: 89
Transcript: PLD1.aAug05

Exon
Length: 114
Transcript: PLD1.aAug05

Exon
Length: 50
Transcript: PLD1.aAug05

Exon
Length: 135
Transcript: PLD1.aAug05

Exon
Length: 154
Transcript: PLD1.aAug05

Exon
Length: 118
Transcript: PLD1.aAug05

Exon
Length: 2491
Transcript: PLD1.aAug05

Intron
Length: 4183
Transcript: PLD1.aAug05

Intron
Length: 721
Transcript: PLD1.aAug05

Intron
Length: 8928
Transcript: PLD1.aAug05

Intron
Length: 7302
Transcript: PLD1.aAug05

Intron
Length: 3455
Transcript: PLD1.aAug05

Intron
Length: 1091
Transcript: PLD1.aAug05

Intron
Length: 572
Transcript: PLD1.aAug05

Intron
Length: 8990
Transcript: PLD1.aAug05

Intron
Length: 732
Transcript: PLD1.aAug05

Intron
Length: 2101
Transcript: PLD1.aAug05

Intron
Length: 12329
Transcript: PLD1.aAug05

Intron
Length: 2758
Transcript: PLD1.aAug05

Intron
Length: 14189
Transcript: PLD1.aAug05

Intron
Length: 2020
Transcript: PLD1.aAug05

Intron
Length: 22319
Transcript: PLD1.aAug05

Intron
Length: 7953
Transcript: PLD1.aAug05

Intron
Length: 6862
Transcript: PLD1.aAug05

Intron
Length: 1996
Transcript: PLD1.aAug05

Reaction
Expected peak: 238
Associated peak: 245,246,247,249,250,251,252,253,261,262,264
Repeated 51 time
Molarity: 3.07M
Forward: PLD1.F1
Reverse: PLD1.R1

Reaction
Expected peak: 365
Associated peak: 383,387,388,389,390,391,392,393,394,395,396,397,415,416,418
Repeated 51 time
Molarity: 5.56M
Forward: PLD1.F2
Reverse: PLD1.R2

Exon
Length: 153
Transcript: PLD1.bAug05

Exon
Length: 150
Transcript: PLD1.bAug05

Exon
Length: 84
Transcript: PLD1.bAug05

Exon
Length: 82
Transcript: PLD1.bAug05

Exon
Length: 111
Transcript: PLD1.bAug05

Exon
Length: 201
Transcript: PLD1.bAug05

Exon
Length: 214
Transcript: PLD1.bAug05

Exon
Length: 129
Transcript: PLD1.bAug05

Exon
Length: 119
Transcript: PLD1.bAug05

Exon
Length: 114
Transcript: PLD1.bAug05

Exon
Length: 111
Transcript: PLD1.bAug05

Exon
Length: 89
Transcript: PLD1.bAug05

Exon
Length: 114
Transcript: PLD1.bAug05

Exon
Length: 50
Transcript: PLD1.bAug05

Exon
Length: 135
Transcript: PLD1.bAug05

Exon
Length: 154
Transcript: PLD1.bAug05

Exon
Length: 118
Transcript: PLD1.bAug05

Exon
Length: 2898
Transcript: PLD1.bAug05

Intron
Length: 4183
Transcript: PLD1.bAug05

Intron
Length: 721
Transcript: PLD1.bAug05

Intron
Length: 8928
Transcript: PLD1.bAug05

Intron
Length: 7302
Transcript: PLD1.bAug05

Intron
Length: 3455
Transcript: PLD1.bAug05

Intron
Length: 1091
Transcript: PLD1.bAug05

Intron
Length: 9676
Transcript: PLD1.bAug05

Intron
Length: 732
Transcript: PLD1.bAug05

Intron
Length: 2101
Transcript: PLD1.bAug05

Intron
Length: 12329
Transcript: PLD1.bAug05

Intron
Length: 2758
Transcript: PLD1.bAug05

Intron
Length: 14189
Transcript: PLD1.bAug05

Intron
Length: 2020
Transcript: PLD1.bAug05

Intron
Length: 22319
Transcript: PLD1.bAug05

Intron
Length: 7953
Transcript: PLD1.bAug05

Intron
Length: 6862
Transcript: PLD1.bAug05

Intron
Length: 1996
Transcript: PLD1.bAug05

Reaction
Expected peak: 124
Associated peak: 132,133,135,136,137,138,139,140,146,148
Repeated 51 time
Molarity: 16.54M
Forward: PLD1.F1
Reverse: PLD1.R1

Reaction
Expected peak: 251
Associated peak: 255,256,258,259,260,261,262,263,264,275,276,278
Repeated 51 time
Molarity: 26.44M
Forward: PLD1.F2
Reverse: PLD1.R2

Exon
Length: 278
Transcript: PLD1.cAug05

Exon
Length: 119
Transcript: PLD1.cAug05

Exon
Length: 114
Transcript: PLD1.cAug05

Exon
Length: 111
Transcript: PLD1.cAug05

Exon
Length: 89
Transcript: PLD1.cAug05

Exon
Length: 114
Transcript: PLD1.cAug05

Exon
Length: 50
Transcript: PLD1.cAug05

Exon
Length: 135
Transcript: PLD1.cAug05

Exon
Length: 154
Transcript: PLD1.cAug05

Exon
Length: 167
Transcript: PLD1.cAug05

Intron
Length: 732
Transcript: PLD1.cAug05

Intron
Length: 2101
Transcript: PLD1.cAug05

Intron
Length: 12329
Transcript: PLD1.cAug05

Intron
Length: 2758
Transcript: PLD1.cAug05

Intron
Length: 14189
Transcript: PLD1.cAug05

Intron
Length: 2020
Transcript: PLD1.cAug05

Intron
Length: 22319
Transcript: PLD1.cAug05

Intron
Length: 7953
Transcript: PLD1.cAug05

Intron
Length: 644
Transcript: PLD1.cAug05

Exon
Length: 301
Transcript: PLD1.dAug05

Exon
Length: 119
Transcript: PLD1.dAug05

Exon
Length: 114
Transcript: PLD1.dAug05

Exon
Length: 111
Transcript: PLD1.dAug05

Exon
Length: 89
Transcript: PLD1.dAug05

Exon
Length: 1052
Transcript: PLD1.dAug05

Intron
Length: 732
Transcript: PLD1.dAug05

Intron
Length: 2101
Transcript: PLD1.dAug05

Intron
Length: 12329
Transcript: PLD1.dAug05

Intron
Length: 2758
Transcript: PLD1.dAug05

Intron
Length: 4919
Transcript: PLD1.dAug05

Exon
Length: 48
Transcript: PLD1.eAug05

Exon
Length: 111
Transcript: PLD1.eAug05

Exon
Length: 89
Transcript: PLD1.eAug05

Exon
Length: 114
Transcript: PLD1.eAug05

Exon
Length: 50
Transcript: PLD1.eAug05

Exon
Length: 135
Transcript: PLD1.eAug05

Exon
Length: 154
Transcript: PLD1.eAug05

Intron
Length: 4087
Transcript: PLD1.eAug05

Intron
Length: 2758
Transcript: PLD1.eAug05

Intron
Length: 14189
Transcript: PLD1.eAug05

Intron
Length: 2020
Transcript: PLD1.eAug05

Intron
Length: 22319
Transcript: PLD1.eAug05

Intron
Length: 7953
Transcript: PLD1.eAug05

Exon
Length: 483
Transcript: PLD1.shed1.aAug05

Exon
Length: 538
Transcript: PLD1.shed2.aAug05

PLD1.R2
CTCTCCCACACCTGTCTGTAAAC

PLD1.F1
ACGACGCAGATAGCATCAGC

PLD1.F2
CCGCAATGGAGTCTATGGAA

PLD1.R1
TTGCAGTAGTCCTTTCCATGC

Gene primer pair list : Primer pairs

Forward	Reverse	Occurences	View
PLD1.F1	PLD1.R1	51	View
PLD1.F2	PLD1.R2	51	View

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