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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: PLD1
Exon
Length: 153
Transcript: PLD1.aAug05
Length: 153
Transcript: PLD1.aAug05
Exon
Length: 150
Transcript: PLD1.aAug05
Length: 150
Transcript: PLD1.aAug05
Exon
Length: 84
Transcript: PLD1.aAug05
Length: 84
Transcript: PLD1.aAug05
Exon
Length: 82
Transcript: PLD1.aAug05
Length: 82
Transcript: PLD1.aAug05
Exon
Length: 111
Transcript: PLD1.aAug05
Length: 111
Transcript: PLD1.aAug05
Exon
Length: 201
Transcript: PLD1.aAug05
Length: 201
Transcript: PLD1.aAug05
Exon
Length: 214
Transcript: PLD1.aAug05
Length: 214
Transcript: PLD1.aAug05
Exon
Length: 114
Transcript: PLD1.aAug05
Length: 114
Transcript: PLD1.aAug05
Exon
Length: 129
Transcript: PLD1.aAug05
Length: 129
Transcript: PLD1.aAug05
Exon
Length: 119
Transcript: PLD1.aAug05
Length: 119
Transcript: PLD1.aAug05
Exon
Length: 114
Transcript: PLD1.aAug05
Length: 114
Transcript: PLD1.aAug05
Exon
Length: 111
Transcript: PLD1.aAug05
Length: 111
Transcript: PLD1.aAug05
Exon
Length: 89
Transcript: PLD1.aAug05
Length: 89
Transcript: PLD1.aAug05
Exon
Length: 114
Transcript: PLD1.aAug05
Length: 114
Transcript: PLD1.aAug05
Exon
Length: 50
Transcript: PLD1.aAug05
Length: 50
Transcript: PLD1.aAug05
Exon
Length: 135
Transcript: PLD1.aAug05
Length: 135
Transcript: PLD1.aAug05
Exon
Length: 154
Transcript: PLD1.aAug05
Length: 154
Transcript: PLD1.aAug05
Exon
Length: 118
Transcript: PLD1.aAug05
Length: 118
Transcript: PLD1.aAug05
Exon
Length: 2491
Transcript: PLD1.aAug05
Length: 2491
Transcript: PLD1.aAug05
Intron
Length: 4183
Transcript: PLD1.aAug05
Length: 4183
Transcript: PLD1.aAug05
Intron
Length: 721
Transcript: PLD1.aAug05
Length: 721
Transcript: PLD1.aAug05
Intron
Length: 8928
Transcript: PLD1.aAug05
Length: 8928
Transcript: PLD1.aAug05
Intron
Length: 7302
Transcript: PLD1.aAug05
Length: 7302
Transcript: PLD1.aAug05
Intron
Length: 3455
Transcript: PLD1.aAug05
Length: 3455
Transcript: PLD1.aAug05
Intron
Length: 1091
Transcript: PLD1.aAug05
Length: 1091
Transcript: PLD1.aAug05
Intron
Length: 572
Transcript: PLD1.aAug05
Length: 572
Transcript: PLD1.aAug05
Intron
Length: 8990
Transcript: PLD1.aAug05
Length: 8990
Transcript: PLD1.aAug05
Intron
Length: 732
Transcript: PLD1.aAug05
Length: 732
Transcript: PLD1.aAug05
Intron
Length: 2101
Transcript: PLD1.aAug05
Length: 2101
Transcript: PLD1.aAug05
Intron
Length: 12329
Transcript: PLD1.aAug05
Length: 12329
Transcript: PLD1.aAug05
Intron
Length: 2758
Transcript: PLD1.aAug05
Length: 2758
Transcript: PLD1.aAug05
Intron
Length: 14189
Transcript: PLD1.aAug05
Length: 14189
Transcript: PLD1.aAug05
Intron
Length: 2020
Transcript: PLD1.aAug05
Length: 2020
Transcript: PLD1.aAug05
Intron
Length: 22319
Transcript: PLD1.aAug05
Length: 22319
Transcript: PLD1.aAug05
Intron
Length: 7953
Transcript: PLD1.aAug05
Length: 7953
Transcript: PLD1.aAug05
Intron
Length: 6862
Transcript: PLD1.aAug05
Length: 6862
Transcript: PLD1.aAug05
Intron
Length: 1996
Transcript: PLD1.aAug05
Length: 1996
Transcript: PLD1.aAug05
Reaction
Expected peak: 238
Associated peak: 245,246,247,249,250,251,252,253,261,262,264
Repeated 51 time
Molarity: 3.07M
Forward: PLD1.F1
Reverse: PLD1.R1
Expected peak: 238
Associated peak: 245,246,247,249,250,251,252,253,261,262,264
Repeated 51 time
Molarity: 3.07M
Forward: PLD1.F1
Reverse: PLD1.R1
Reaction
Expected peak: 365
Associated peak: 383,387,388,389,390,391,392,393,394,395,396,397,415,416,418
Repeated 51 time
Molarity: 5.56M
Forward: PLD1.F2
Reverse: PLD1.R2
Expected peak: 365
Associated peak: 383,387,388,389,390,391,392,393,394,395,396,397,415,416,418
Repeated 51 time
Molarity: 5.56M
Forward: PLD1.F2
Reverse: PLD1.R2
Exon
Length: 153
Transcript: PLD1.bAug05
Length: 153
Transcript: PLD1.bAug05
Exon
Length: 150
Transcript: PLD1.bAug05
Length: 150
Transcript: PLD1.bAug05
Exon
Length: 84
Transcript: PLD1.bAug05
Length: 84
Transcript: PLD1.bAug05
Exon
Length: 82
Transcript: PLD1.bAug05
Length: 82
Transcript: PLD1.bAug05
Exon
Length: 111
Transcript: PLD1.bAug05
Length: 111
Transcript: PLD1.bAug05
Exon
Length: 201
Transcript: PLD1.bAug05
Length: 201
Transcript: PLD1.bAug05
Exon
Length: 214
Transcript: PLD1.bAug05
Length: 214
Transcript: PLD1.bAug05
Exon
Length: 129
Transcript: PLD1.bAug05
Length: 129
Transcript: PLD1.bAug05
Exon
Length: 119
Transcript: PLD1.bAug05
Length: 119
Transcript: PLD1.bAug05
Exon
Length: 114
Transcript: PLD1.bAug05
Length: 114
Transcript: PLD1.bAug05
Exon
Length: 111
Transcript: PLD1.bAug05
Length: 111
Transcript: PLD1.bAug05
Exon
Length: 89
Transcript: PLD1.bAug05
Length: 89
Transcript: PLD1.bAug05
Exon
Length: 114
Transcript: PLD1.bAug05
Length: 114
Transcript: PLD1.bAug05
Exon
Length: 50
Transcript: PLD1.bAug05
Length: 50
Transcript: PLD1.bAug05
Exon
Length: 135
Transcript: PLD1.bAug05
Length: 135
Transcript: PLD1.bAug05
Exon
Length: 154
Transcript: PLD1.bAug05
Length: 154
Transcript: PLD1.bAug05
Exon
Length: 118
Transcript: PLD1.bAug05
Length: 118
Transcript: PLD1.bAug05
Exon
Length: 2898
Transcript: PLD1.bAug05
Length: 2898
Transcript: PLD1.bAug05
Intron
Length: 4183
Transcript: PLD1.bAug05
Length: 4183
Transcript: PLD1.bAug05
Intron
Length: 721
Transcript: PLD1.bAug05
Length: 721
Transcript: PLD1.bAug05
Intron
Length: 8928
Transcript: PLD1.bAug05
Length: 8928
Transcript: PLD1.bAug05
Intron
Length: 7302
Transcript: PLD1.bAug05
Length: 7302
Transcript: PLD1.bAug05
Intron
Length: 3455
Transcript: PLD1.bAug05
Length: 3455
Transcript: PLD1.bAug05
Intron
Length: 1091
Transcript: PLD1.bAug05
Length: 1091
Transcript: PLD1.bAug05
Intron
Length: 9676
Transcript: PLD1.bAug05
Length: 9676
Transcript: PLD1.bAug05
Intron
Length: 732
Transcript: PLD1.bAug05
Length: 732
Transcript: PLD1.bAug05
Intron
Length: 2101
Transcript: PLD1.bAug05
Length: 2101
Transcript: PLD1.bAug05
Intron
Length: 12329
Transcript: PLD1.bAug05
Length: 12329
Transcript: PLD1.bAug05
Intron
Length: 2758
Transcript: PLD1.bAug05
Length: 2758
Transcript: PLD1.bAug05
Intron
Length: 14189
Transcript: PLD1.bAug05
Length: 14189
Transcript: PLD1.bAug05
Intron
Length: 2020
Transcript: PLD1.bAug05
Length: 2020
Transcript: PLD1.bAug05
Intron
Length: 22319
Transcript: PLD1.bAug05
Length: 22319
Transcript: PLD1.bAug05
Intron
Length: 7953
Transcript: PLD1.bAug05
Length: 7953
Transcript: PLD1.bAug05
Intron
Length: 6862
Transcript: PLD1.bAug05
Length: 6862
Transcript: PLD1.bAug05
Intron
Length: 1996
Transcript: PLD1.bAug05
Length: 1996
Transcript: PLD1.bAug05
Reaction
Expected peak: 124
Associated peak: 132,133,135,136,137,138,139,140,146,148
Repeated 51 time
Molarity: 16.54M
Forward: PLD1.F1
Reverse: PLD1.R1
Expected peak: 124
Associated peak: 132,133,135,136,137,138,139,140,146,148
Repeated 51 time
Molarity: 16.54M
Forward: PLD1.F1
Reverse: PLD1.R1
Reaction
Expected peak: 251
Associated peak: 255,256,258,259,260,261,262,263,264,275,276,278
Repeated 51 time
Molarity: 26.44M
Forward: PLD1.F2
Reverse: PLD1.R2
Expected peak: 251
Associated peak: 255,256,258,259,260,261,262,263,264,275,276,278
Repeated 51 time
Molarity: 26.44M
Forward: PLD1.F2
Reverse: PLD1.R2
Exon
Length: 278
Transcript: PLD1.cAug05
Length: 278
Transcript: PLD1.cAug05
Exon
Length: 119
Transcript: PLD1.cAug05
Length: 119
Transcript: PLD1.cAug05
Exon
Length: 114
Transcript: PLD1.cAug05
Length: 114
Transcript: PLD1.cAug05
Exon
Length: 111
Transcript: PLD1.cAug05
Length: 111
Transcript: PLD1.cAug05
Exon
Length: 89
Transcript: PLD1.cAug05
Length: 89
Transcript: PLD1.cAug05
Exon
Length: 114
Transcript: PLD1.cAug05
Length: 114
Transcript: PLD1.cAug05
Exon
Length: 50
Transcript: PLD1.cAug05
Length: 50
Transcript: PLD1.cAug05
Exon
Length: 135
Transcript: PLD1.cAug05
Length: 135
Transcript: PLD1.cAug05
Exon
Length: 154
Transcript: PLD1.cAug05
Length: 154
Transcript: PLD1.cAug05
Exon
Length: 167
Transcript: PLD1.cAug05
Length: 167
Transcript: PLD1.cAug05
Intron
Length: 732
Transcript: PLD1.cAug05
Length: 732
Transcript: PLD1.cAug05
Intron
Length: 2101
Transcript: PLD1.cAug05
Length: 2101
Transcript: PLD1.cAug05
Intron
Length: 12329
Transcript: PLD1.cAug05
Length: 12329
Transcript: PLD1.cAug05
Intron
Length: 2758
Transcript: PLD1.cAug05
Length: 2758
Transcript: PLD1.cAug05
Intron
Length: 14189
Transcript: PLD1.cAug05
Length: 14189
Transcript: PLD1.cAug05
Intron
Length: 2020
Transcript: PLD1.cAug05
Length: 2020
Transcript: PLD1.cAug05
Intron
Length: 22319
Transcript: PLD1.cAug05
Length: 22319
Transcript: PLD1.cAug05
Intron
Length: 7953
Transcript: PLD1.cAug05
Length: 7953
Transcript: PLD1.cAug05
Intron
Length: 644
Transcript: PLD1.cAug05
Length: 644
Transcript: PLD1.cAug05
Exon
Length: 301
Transcript: PLD1.dAug05
Length: 301
Transcript: PLD1.dAug05
Exon
Length: 119
Transcript: PLD1.dAug05
Length: 119
Transcript: PLD1.dAug05
Exon
Length: 114
Transcript: PLD1.dAug05
Length: 114
Transcript: PLD1.dAug05
Exon
Length: 111
Transcript: PLD1.dAug05
Length: 111
Transcript: PLD1.dAug05
Exon
Length: 89
Transcript: PLD1.dAug05
Length: 89
Transcript: PLD1.dAug05
Exon
Length: 1052
Transcript: PLD1.dAug05
Length: 1052
Transcript: PLD1.dAug05
Intron
Length: 732
Transcript: PLD1.dAug05
Length: 732
Transcript: PLD1.dAug05
Intron
Length: 2101
Transcript: PLD1.dAug05
Length: 2101
Transcript: PLD1.dAug05
Intron
Length: 12329
Transcript: PLD1.dAug05
Length: 12329
Transcript: PLD1.dAug05
Intron
Length: 2758
Transcript: PLD1.dAug05
Length: 2758
Transcript: PLD1.dAug05
Intron
Length: 4919
Transcript: PLD1.dAug05
Length: 4919
Transcript: PLD1.dAug05
Exon
Length: 48
Transcript: PLD1.eAug05
Length: 48
Transcript: PLD1.eAug05
Exon
Length: 111
Transcript: PLD1.eAug05
Length: 111
Transcript: PLD1.eAug05
Exon
Length: 89
Transcript: PLD1.eAug05
Length: 89
Transcript: PLD1.eAug05
Exon
Length: 114
Transcript: PLD1.eAug05
Length: 114
Transcript: PLD1.eAug05
Exon
Length: 50
Transcript: PLD1.eAug05
Length: 50
Transcript: PLD1.eAug05
Exon
Length: 135
Transcript: PLD1.eAug05
Length: 135
Transcript: PLD1.eAug05
Exon
Length: 154
Transcript: PLD1.eAug05
Length: 154
Transcript: PLD1.eAug05
Intron
Length: 4087
Transcript: PLD1.eAug05
Length: 4087
Transcript: PLD1.eAug05
Intron
Length: 2758
Transcript: PLD1.eAug05
Length: 2758
Transcript: PLD1.eAug05
Intron
Length: 14189
Transcript: PLD1.eAug05
Length: 14189
Transcript: PLD1.eAug05
Intron
Length: 2020
Transcript: PLD1.eAug05
Length: 2020
Transcript: PLD1.eAug05
Intron
Length: 22319
Transcript: PLD1.eAug05
Length: 22319
Transcript: PLD1.eAug05
Intron
Length: 7953
Transcript: PLD1.eAug05
Length: 7953
Transcript: PLD1.eAug05
Exon
Length: 483
Transcript: PLD1.shed1.aAug05
Length: 483
Transcript: PLD1.shed1.aAug05
Exon
Length: 538
Transcript: PLD1.shed2.aAug05
Length: 538
Transcript: PLD1.shed2.aAug05
PLD1.R2
CTCTCCCACACCTGTCTGTAAAC
CTCTCCCACACCTGTCTGTAAAC
PLD1.F1
ACGACGCAGATAGCATCAGC
ACGACGCAGATAGCATCAGC
PLD1.F2
CCGCAATGGAGTCTATGGAA
CCGCAATGGAGTCTATGGAA
PLD1.R1
TTGCAGTAGTCCTTTCCATGC
TTGCAGTAGTCCTTTCCATGC