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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: HMMR
Exon
Length: 189
Transcript: HMMR.aAug05
Length: 189
Transcript: HMMR.aAug05
Exon
Length: 99
Transcript: HMMR.aAug05
Length: 99
Transcript: HMMR.aAug05
Exon
Length: 80
Transcript: HMMR.aAug05
Length: 80
Transcript: HMMR.aAug05
Exon
Length: 48
Transcript: HMMR.aAug05
Length: 48
Transcript: HMMR.aAug05
Exon
Length: 189
Transcript: HMMR.aAug05
Length: 189
Transcript: HMMR.aAug05
Exon
Length: 87
Transcript: HMMR.aAug05
Length: 87
Transcript: HMMR.aAug05
Exon
Length: 101
Transcript: HMMR.aAug05
Length: 101
Transcript: HMMR.aAug05
Exon
Length: 75
Transcript: HMMR.aAug05
Length: 75
Transcript: HMMR.aAug05
Exon
Length: 179
Transcript: HMMR.aAug05
Length: 179
Transcript: HMMR.aAug05
Exon
Length: 149
Transcript: HMMR.aAug05
Length: 149
Transcript: HMMR.aAug05
Exon
Length: 215
Transcript: HMMR.aAug05
Length: 215
Transcript: HMMR.aAug05
Exon
Length: 117
Transcript: HMMR.aAug05
Length: 117
Transcript: HMMR.aAug05
Exon
Length: 147
Transcript: HMMR.aAug05
Length: 147
Transcript: HMMR.aAug05
Exon
Length: 153
Transcript: HMMR.aAug05
Length: 153
Transcript: HMMR.aAug05
Exon
Length: 100
Transcript: HMMR.aAug05
Length: 100
Transcript: HMMR.aAug05
Exon
Length: 177
Transcript: HMMR.aAug05
Length: 177
Transcript: HMMR.aAug05
Exon
Length: 163
Transcript: HMMR.aAug05
Length: 163
Transcript: HMMR.aAug05
Exon
Length: 570
Transcript: HMMR.aAug05
Length: 570
Transcript: HMMR.aAug05
Intron
Length: 3117
Transcript: HMMR.aAug05
Length: 3117
Transcript: HMMR.aAug05
Intron
Length: 768
Transcript: HMMR.aAug05
Length: 768
Transcript: HMMR.aAug05
Intron
Length: 2898
Transcript: HMMR.aAug05
Length: 2898
Transcript: HMMR.aAug05
Intron
Length: 1892
Transcript: HMMR.aAug05
Length: 1892
Transcript: HMMR.aAug05
Intron
Length: 1355
Transcript: HMMR.aAug05
Length: 1355
Transcript: HMMR.aAug05
Intron
Length: 91
Transcript: HMMR.aAug05
Length: 91
Transcript: HMMR.aAug05
Intron
Length: 1715
Transcript: HMMR.aAug05
Length: 1715
Transcript: HMMR.aAug05
Intron
Length: 125
Transcript: HMMR.aAug05
Length: 125
Transcript: HMMR.aAug05
Intron
Length: 499
Transcript: HMMR.aAug05
Length: 499
Transcript: HMMR.aAug05
Intron
Length: 1252
Transcript: HMMR.aAug05
Length: 1252
Transcript: HMMR.aAug05
Intron
Length: 3011
Transcript: HMMR.aAug05
Length: 3011
Transcript: HMMR.aAug05
Intron
Length: 3841
Transcript: HMMR.aAug05
Length: 3841
Transcript: HMMR.aAug05
Intron
Length: 231
Transcript: HMMR.aAug05
Length: 231
Transcript: HMMR.aAug05
Intron
Length: 95
Transcript: HMMR.aAug05
Length: 95
Transcript: HMMR.aAug05
Intron
Length: 701
Transcript: HMMR.aAug05
Length: 701
Transcript: HMMR.aAug05
Intron
Length: 6144
Transcript: HMMR.aAug05
Length: 6144
Transcript: HMMR.aAug05
Intron
Length: 559
Transcript: HMMR.aAug05
Length: 559
Transcript: HMMR.aAug05
Reaction
Expected peak: 192
Associated peak: 201,202,203,204,205,221
Repeated 51 time
Molarity: 7.54M
Forward: HMMR.F1
Reverse: HMMR.R1
Expected peak: 192
Associated peak: 201,202,203,204,205,221
Repeated 51 time
Molarity: 7.54M
Forward: HMMR.F1
Reverse: HMMR.R1
Exon
Length: 82
Transcript: HMMR.bAug05
Length: 82
Transcript: HMMR.bAug05
Exon
Length: 99
Transcript: HMMR.bAug05
Length: 99
Transcript: HMMR.bAug05
Exon
Length: 80
Transcript: HMMR.bAug05
Length: 80
Transcript: HMMR.bAug05
Exon
Length: 45
Transcript: HMMR.bAug05
Length: 45
Transcript: HMMR.bAug05
Exon
Length: 189
Transcript: HMMR.bAug05
Length: 189
Transcript: HMMR.bAug05
Exon
Length: 87
Transcript: HMMR.bAug05
Length: 87
Transcript: HMMR.bAug05
Exon
Length: 101
Transcript: HMMR.bAug05
Length: 101
Transcript: HMMR.bAug05
Exon
Length: 75
Transcript: HMMR.bAug05
Length: 75
Transcript: HMMR.bAug05
Exon
Length: 179
Transcript: HMMR.bAug05
Length: 179
Transcript: HMMR.bAug05
Exon
Length: 149
Transcript: HMMR.bAug05
Length: 149
Transcript: HMMR.bAug05
Exon
Length: 215
Transcript: HMMR.bAug05
Length: 215
Transcript: HMMR.bAug05
Exon
Length: 117
Transcript: HMMR.bAug05
Length: 117
Transcript: HMMR.bAug05
Exon
Length: 147
Transcript: HMMR.bAug05
Length: 147
Transcript: HMMR.bAug05
Exon
Length: 153
Transcript: HMMR.bAug05
Length: 153
Transcript: HMMR.bAug05
Exon
Length: 100
Transcript: HMMR.bAug05
Length: 100
Transcript: HMMR.bAug05
Exon
Length: 177
Transcript: HMMR.bAug05
Length: 177
Transcript: HMMR.bAug05
Exon
Length: 163
Transcript: HMMR.bAug05
Length: 163
Transcript: HMMR.bAug05
Exon
Length: 834
Transcript: HMMR.bAug05
Length: 834
Transcript: HMMR.bAug05
Intron
Length: 3117
Transcript: HMMR.bAug05
Length: 3117
Transcript: HMMR.bAug05
Intron
Length: 768
Transcript: HMMR.bAug05
Length: 768
Transcript: HMMR.bAug05
Intron
Length: 2901
Transcript: HMMR.bAug05
Length: 2901
Transcript: HMMR.bAug05
Intron
Length: 1892
Transcript: HMMR.bAug05
Length: 1892
Transcript: HMMR.bAug05
Intron
Length: 1355
Transcript: HMMR.bAug05
Length: 1355
Transcript: HMMR.bAug05
Intron
Length: 91
Transcript: HMMR.bAug05
Length: 91
Transcript: HMMR.bAug05
Intron
Length: 1715
Transcript: HMMR.bAug05
Length: 1715
Transcript: HMMR.bAug05
Intron
Length: 125
Transcript: HMMR.bAug05
Length: 125
Transcript: HMMR.bAug05
Intron
Length: 499
Transcript: HMMR.bAug05
Length: 499
Transcript: HMMR.bAug05
Intron
Length: 1252
Transcript: HMMR.bAug05
Length: 1252
Transcript: HMMR.bAug05
Intron
Length: 3011
Transcript: HMMR.bAug05
Length: 3011
Transcript: HMMR.bAug05
Intron
Length: 3841
Transcript: HMMR.bAug05
Length: 3841
Transcript: HMMR.bAug05
Intron
Length: 231
Transcript: HMMR.bAug05
Length: 231
Transcript: HMMR.bAug05
Intron
Length: 95
Transcript: HMMR.bAug05
Length: 95
Transcript: HMMR.bAug05
Intron
Length: 701
Transcript: HMMR.bAug05
Length: 701
Transcript: HMMR.bAug05
Intron
Length: 6144
Transcript: HMMR.bAug05
Length: 6144
Transcript: HMMR.bAug05
Intron
Length: 559
Transcript: HMMR.bAug05
Length: 559
Transcript: HMMR.bAug05
Reaction
Expected peak: 189
Associated peak: 201,202,203,204,205,221
Repeated 51 time
Molarity: 7.54M
Forward: HMMR.F1
Reverse: HMMR.R1
Expected peak: 189
Associated peak: 201,202,203,204,205,221
Repeated 51 time
Molarity: 7.54M
Forward: HMMR.F1
Reverse: HMMR.R1
Exon
Length: 373
Transcript: HMMR.cAug05
Length: 373
Transcript: HMMR.cAug05
Exon
Length: 99
Transcript: HMMR.cAug05
Length: 99
Transcript: HMMR.cAug05
Exon
Length: 80
Transcript: HMMR.cAug05
Length: 80
Transcript: HMMR.cAug05
Exon
Length: 189
Transcript: HMMR.cAug05
Length: 189
Transcript: HMMR.cAug05
Exon
Length: 87
Transcript: HMMR.cAug05
Length: 87
Transcript: HMMR.cAug05
Exon
Length: 101
Transcript: HMMR.cAug05
Length: 101
Transcript: HMMR.cAug05
Exon
Length: 75
Transcript: HMMR.cAug05
Length: 75
Transcript: HMMR.cAug05
Exon
Length: 179
Transcript: HMMR.cAug05
Length: 179
Transcript: HMMR.cAug05
Exon
Length: 149
Transcript: HMMR.cAug05
Length: 149
Transcript: HMMR.cAug05
Exon
Length: 215
Transcript: HMMR.cAug05
Length: 215
Transcript: HMMR.cAug05
Exon
Length: 117
Transcript: HMMR.cAug05
Length: 117
Transcript: HMMR.cAug05
Exon
Length: 147
Transcript: HMMR.cAug05
Length: 147
Transcript: HMMR.cAug05
Exon
Length: 153
Transcript: HMMR.cAug05
Length: 153
Transcript: HMMR.cAug05
Exon
Length: 100
Transcript: HMMR.cAug05
Length: 100
Transcript: HMMR.cAug05
Exon
Length: 177
Transcript: HMMR.cAug05
Length: 177
Transcript: HMMR.cAug05
Exon
Length: 163
Transcript: HMMR.cAug05
Length: 163
Transcript: HMMR.cAug05
Exon
Length: 828
Transcript: HMMR.cAug05
Length: 828
Transcript: HMMR.cAug05
Intron
Length: 3117
Transcript: HMMR.cAug05
Length: 3117
Transcript: HMMR.cAug05
Intron
Length: 768
Transcript: HMMR.cAug05
Length: 768
Transcript: HMMR.cAug05
Intron
Length: 4838
Transcript: HMMR.cAug05
Length: 4838
Transcript: HMMR.cAug05
Intron
Length: 1355
Transcript: HMMR.cAug05
Length: 1355
Transcript: HMMR.cAug05
Intron
Length: 91
Transcript: HMMR.cAug05
Length: 91
Transcript: HMMR.cAug05
Intron
Length: 1715
Transcript: HMMR.cAug05
Length: 1715
Transcript: HMMR.cAug05
Intron
Length: 125
Transcript: HMMR.cAug05
Length: 125
Transcript: HMMR.cAug05
Intron
Length: 499
Transcript: HMMR.cAug05
Length: 499
Transcript: HMMR.cAug05
Intron
Length: 1252
Transcript: HMMR.cAug05
Length: 1252
Transcript: HMMR.cAug05
Intron
Length: 3011
Transcript: HMMR.cAug05
Length: 3011
Transcript: HMMR.cAug05
Intron
Length: 3841
Transcript: HMMR.cAug05
Length: 3841
Transcript: HMMR.cAug05
Intron
Length: 231
Transcript: HMMR.cAug05
Length: 231
Transcript: HMMR.cAug05
Intron
Length: 95
Transcript: HMMR.cAug05
Length: 95
Transcript: HMMR.cAug05
Intron
Length: 701
Transcript: HMMR.cAug05
Length: 701
Transcript: HMMR.cAug05
Intron
Length: 6144
Transcript: HMMR.cAug05
Length: 6144
Transcript: HMMR.cAug05
Intron
Length: 559
Transcript: HMMR.cAug05
Length: 559
Transcript: HMMR.cAug05
Reaction
Expected peak: 144
Associated peak: 151,152,153,154,155,156
Repeated 51 time
Molarity: 13.56M
Forward: HMMR.F1
Reverse: HMMR.R1
Expected peak: 144
Associated peak: 151,152,153,154,155,156
Repeated 51 time
Molarity: 13.56M
Forward: HMMR.F1
Reverse: HMMR.R1
Exon
Length: 82
Transcript: HMMR.dAug05
Length: 82
Transcript: HMMR.dAug05
Exon
Length: 99
Transcript: HMMR.dAug05
Length: 99
Transcript: HMMR.dAug05
Exon
Length: 189
Transcript: HMMR.dAug05
Length: 189
Transcript: HMMR.dAug05
Exon
Length: 87
Transcript: HMMR.dAug05
Length: 87
Transcript: HMMR.dAug05
Exon
Length: 101
Transcript: HMMR.dAug05
Length: 101
Transcript: HMMR.dAug05
Exon
Length: 75
Transcript: HMMR.dAug05
Length: 75
Transcript: HMMR.dAug05
Exon
Length: 71
Transcript: HMMR.dAug05
Length: 71
Transcript: HMMR.dAug05
Intron
Length: 3117
Transcript: HMMR.dAug05
Length: 3117
Transcript: HMMR.dAug05
Intron
Length: 5686
Transcript: HMMR.dAug05
Length: 5686
Transcript: HMMR.dAug05
Intron
Length: 1355
Transcript: HMMR.dAug05
Length: 1355
Transcript: HMMR.dAug05
Intron
Length: 91
Transcript: HMMR.dAug05
Length: 91
Transcript: HMMR.dAug05
Intron
Length: 1715
Transcript: HMMR.dAug05
Length: 1715
Transcript: HMMR.dAug05
Intron
Length: 125
Transcript: HMMR.dAug05
Length: 125
Transcript: HMMR.dAug05
Exon
Length: 79
Transcript: HMMR.eAug05
Length: 79
Transcript: HMMR.eAug05
Exon
Length: 99
Transcript: HMMR.eAug05
Length: 99
Transcript: HMMR.eAug05
Exon
Length: 80
Transcript: HMMR.eAug05
Length: 80
Transcript: HMMR.eAug05
Exon
Length: 1361
Transcript: HMMR.eAug05
Length: 1361
Transcript: HMMR.eAug05
Intron
Length: 3117
Transcript: HMMR.eAug05
Length: 3117
Transcript: HMMR.eAug05
Intron
Length: 768
Transcript: HMMR.eAug05
Length: 768
Transcript: HMMR.eAug05
Intron
Length: 4838
Transcript: HMMR.eAug05
Length: 4838
Transcript: HMMR.eAug05
Reaction
Expected peak: 144
Associated peak: 151,152,153,154,155,156
Repeated 51 time
Molarity: 13.56M
Forward: HMMR.F1
Reverse: HMMR.R1
Expected peak: 144
Associated peak: 151,152,153,154,155,156
Repeated 51 time
Molarity: 13.56M
Forward: HMMR.F1
Reverse: HMMR.R1
Exon
Length: 249
Transcript: HMMR.shed1.aAug05
Length: 249
Transcript: HMMR.shed1.aAug05
HMMR.F1
ATACTACCTTGCCTGCTTCAGC
ATACTACCTTGCCTGCTTCAGC
HMMR.R1
CAGCATTTAGCCTTGCTTCC
CAGCATTTAGCCTTGCTTCC