2. Breast Validation Screen - Rnomics 📊 Palace

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Home Public data LGFUS Public Data Identification of alternative splicing markers for breast cancer 2. Breast Validation Screen

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https://rnomics.med.usherbrooke.ca/palace?purl=/data/related/3/gene/447522

2. Breast Validation Screen ⚙

Transcript map : HMGA1

Exon
Length: 92
Transcript: HMGA1.aAug05

Exon
Length: 84
Transcript: HMGA1.aAug05

Exon
Length: 51
Transcript: HMGA1.aAug05

Exon
Length: 97
Transcript: HMGA1.aAug05

Exon
Length: 883
Transcript: HMGA1.aAug05

Exon
Length: 408
Transcript: HMGA1.aAug05

Intron
Length: 1796
Transcript: HMGA1.aAug05

Intron
Length: 672
Transcript: HMGA1.aAug05

Intron
Length: 97
Transcript: HMGA1.aAug05

Intron
Length: 1118
Transcript: HMGA1.aAug05

Intron
Length: 110
Transcript: HMGA1.aAug05

Exon
Length: 90
Transcript: HMGA1.bAug05

Exon
Length: 114
Transcript: HMGA1.bAug05

Exon
Length: 179
Transcript: HMGA1.bAug05

Exon
Length: 81
Transcript: HMGA1.bAug05

Exon
Length: 51
Transcript: HMGA1.bAug05

Exon
Length: 97
Transcript: HMGA1.bAug05

Intron
Length: 240
Transcript: HMGA1.bAug05

Intron
Length: 3419
Transcript: HMGA1.bAug05

Intron
Length: 1799
Transcript: HMGA1.bAug05

Intron
Length: 672
Transcript: HMGA1.bAug05

Intron
Length: 97
Transcript: HMGA1.bAug05

Reaction
Expected peak: 307
Associated peak: 307,309,310,311,312
Repeated 51 time
Molarity: 3.13M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Exon
Length: 403
Transcript: HMGA1.cAug05

Exon
Length: 179
Transcript: HMGA1.cAug05

Exon
Length: 84
Transcript: HMGA1.cAug05

Exon
Length: 51
Transcript: HMGA1.cAug05

Exon
Length: 1401
Transcript: HMGA1.cAug05

Intron
Length: 3419
Transcript: HMGA1.cAug05

Intron
Length: 1796
Transcript: HMGA1.cAug05

Intron
Length: 672
Transcript: HMGA1.cAug05

Intron
Length: 1312
Transcript: HMGA1.cAug05

Reaction
Expected peak: 337
Associated peak: 322,323,325,326,351,352,353,354,355,356,357,358,359,360,361,370,373
Repeated 51 time
Molarity: 18.96M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 402
Transcript: HMGA1.dAug05

Exon
Length: 179
Transcript: HMGA1.dAug05

Exon
Length: 81
Transcript: HMGA1.dAug05

Exon
Length: 51
Transcript: HMGA1.dAug05

Exon
Length: 882
Transcript: HMGA1.dAug05

Intron
Length: 3419
Transcript: HMGA1.dAug05

Intron
Length: 1799
Transcript: HMGA1.dAug05

Intron
Length: 672
Transcript: HMGA1.dAug05

Intron
Length: 1312
Transcript: HMGA1.dAug05

Reaction
Expected peak: 334
Associated peak: 310,313,322,323,325,326,351,352,353,354,355,356,357,358,359,360,361,370,373
Repeated 51 time
Molarity: 21.33M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 57
Transcript: HMGA1.eAug05

Exon
Length: 114
Transcript: HMGA1.eAug05

Exon
Length: 179
Transcript: HMGA1.eAug05

Exon
Length: 84
Transcript: HMGA1.eAug05

Exon
Length: 51
Transcript: HMGA1.eAug05

Exon
Length: 426
Transcript: HMGA1.eAug05

Intron
Length: 242
Transcript: HMGA1.eAug05

Intron
Length: 3419
Transcript: HMGA1.eAug05

Intron
Length: 1796
Transcript: HMGA1.eAug05

Intron
Length: 672
Transcript: HMGA1.eAug05

Intron
Length: 1312
Transcript: HMGA1.eAug05

Reaction
Expected peak: 305
Associated peak: 307,309,310,311,312
Repeated 51 time
Molarity: 3.13M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Reaction
Expected peak: 337
Associated peak: 322,323,325,326,351,352,353,354,355,356,357,358,359,360,361,370,373
Repeated 51 time
Molarity: 18.96M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 130
Transcript: HMGA1.fAug05

Exon
Length: 114
Transcript: HMGA1.fAug05

Exon
Length: 179
Transcript: HMGA1.fAug05

Exon
Length: 84
Transcript: HMGA1.fAug05

Exon
Length: 51
Transcript: HMGA1.fAug05

Exon
Length: 1400
Transcript: HMGA1.fAug05

Intron
Length: 240
Transcript: HMGA1.fAug05

Intron
Length: 3419
Transcript: HMGA1.fAug05

Intron
Length: 1796
Transcript: HMGA1.fAug05

Intron
Length: 672
Transcript: HMGA1.fAug05

Intron
Length: 1312
Transcript: HMGA1.fAug05

Reaction
Expected peak: 307
Associated peak: 307,309,310,311,312
Repeated 51 time
Molarity: 3.13M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Reaction
Expected peak: 337
Associated peak: 322,323,325,326,351,352,353,354,355,356,357,358,359,360,361,370,373
Repeated 51 time
Molarity: 18.96M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 75
Transcript: HMGA1.gAug05

Exon
Length: 114
Transcript: HMGA1.gAug05

Exon
Length: 179
Transcript: HMGA1.gAug05

Exon
Length: 81
Transcript: HMGA1.gAug05

Exon
Length: 51
Transcript: HMGA1.gAug05

Exon
Length: 229
Transcript: HMGA1.gAug05

Intron
Length: 240
Transcript: HMGA1.gAug05

Intron
Length: 3419
Transcript: HMGA1.gAug05

Intron
Length: 1799
Transcript: HMGA1.gAug05

Intron
Length: 672
Transcript: HMGA1.gAug05

Intron
Length: 1312
Transcript: HMGA1.gAug05

Reaction
Expected peak: 307
Associated peak: 307,309,310,311,312
Repeated 51 time
Molarity: 3.13M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Exon
Length: 416
Transcript: HMGA1.hAug05

Exon
Length: 146
Transcript: HMGA1.hAug05

Exon
Length: 84
Transcript: HMGA1.hAug05

Exon
Length: 51
Transcript: HMGA1.hAug05

Exon
Length: 1401
Transcript: HMGA1.hAug05

Intron
Length: 3419
Transcript: HMGA1.hAug05

Intron
Length: 1829
Transcript: HMGA1.hAug05

Intron
Length: 672
Transcript: HMGA1.hAug05

Intron
Length: 1312
Transcript: HMGA1.hAug05

Reaction
Expected peak: 304
Associated peak: 300,302,304,305,307,309,310,313
Repeated 51 time
Molarity: 26.35M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 91
Transcript: HMGA1.iAug05

Exon
Length: 114
Transcript: HMGA1.iAug05

Exon
Length: 146
Transcript: HMGA1.iAug05

Exon
Length: 84
Transcript: HMGA1.iAug05

Exon
Length: 51
Transcript: HMGA1.iAug05

Exon
Length: 1407
Transcript: HMGA1.iAug05

Intron
Length: 240
Transcript: HMGA1.iAug05

Intron
Length: 3419
Transcript: HMGA1.iAug05

Intron
Length: 1829
Transcript: HMGA1.iAug05

Intron
Length: 672
Transcript: HMGA1.iAug05

Intron
Length: 1312
Transcript: HMGA1.iAug05

Reaction
Expected peak: 304
Associated peak: 300,302,304,305,307,309,310,313
Repeated 51 time
Molarity: 26.35M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Reaction
Expected peak: 307
Associated peak: 307,309,310,311,312
Repeated 51 time
Molarity: 3.13M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Exon
Length: 88
Transcript: HMGA1.jAug05

Exon
Length: 114
Transcript: HMGA1.jAug05

Exon
Length: 146
Transcript: HMGA1.jAug05

Exon
Length: 84
Transcript: HMGA1.jAug05

Exon
Length: 51
Transcript: HMGA1.jAug05

Exon
Length: 124
Transcript: HMGA1.jAug05

Exon
Length: 40
Transcript: HMGA1.jAug05

Intron
Length: 240
Transcript: HMGA1.jAug05

Intron
Length: 3419
Transcript: HMGA1.jAug05

Intron
Length: 1829
Transcript: HMGA1.jAug05

Intron
Length: 672
Transcript: HMGA1.jAug05

Intron
Length: 1312
Transcript: HMGA1.jAug05

Intron
Length: 612
Transcript: HMGA1.jAug05

Reaction
Expected peak: 304
Associated peak: 300,302,304,305,307,309,310,313
Repeated 51 time
Molarity: 26.35M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Reaction
Expected peak: 307
Associated peak: 307,309,310,311,312
Repeated 51 time
Molarity: 3.13M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Exon
Length: 45
Transcript: HMGA1.kAug05

Exon
Length: 114
Transcript: HMGA1.kAug05

Exon
Length: 179
Transcript: HMGA1.kAug05

Exon
Length: 84
Transcript: HMGA1.kAug05

Exon
Length: 51
Transcript: HMGA1.kAug05

Exon
Length: 124
Transcript: HMGA1.kAug05

Intron
Length: 220
Transcript: HMGA1.kAug05

Intron
Length: 3419
Transcript: HMGA1.kAug05

Intron
Length: 1796
Transcript: HMGA1.kAug05

Intron
Length: 672
Transcript: HMGA1.kAug05

Intron
Length: 1312
Transcript: HMGA1.kAug05

Reaction
Expected peak: 337
Associated peak: 322,323,325,326,351,352,353,354,355,356,357,358,359,360,361,370,373
Repeated 51 time
Molarity: 18.96M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 48
Transcript: HMGA1.lAug05

Exon
Length: 114
Transcript: HMGA1.lAug05

Exon
Length: 146
Transcript: HMGA1.lAug05

Exon
Length: 81
Transcript: HMGA1.lAug05

Exon
Length: 51
Transcript: HMGA1.lAug05

Exon
Length: 1400
Transcript: HMGA1.lAug05

Intron
Length: 240
Transcript: HMGA1.lAug05

Intron
Length: 3419
Transcript: HMGA1.lAug05

Intron
Length: 1832
Transcript: HMGA1.lAug05

Intron
Length: 672
Transcript: HMGA1.lAug05

Intron
Length: 1312
Transcript: HMGA1.lAug05

Reaction
Expected peak: 301
Associated peak: 300,302,304,305,307,309,310,313
Repeated 51 time
Molarity: 26.35M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Reaction
Expected peak: 307
Associated peak: 307,309,310,311,312
Repeated 51 time
Molarity: 3.13M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Exon
Length: 92
Transcript: HMGA1.mAug05

Exon
Length: 114
Transcript: HMGA1.mAug05

Exon
Length: 179
Transcript: HMGA1.mAug05

Exon
Length: 69
Transcript: HMGA1.mAug05

Exon
Length: 202
Transcript: HMGA1.mAug05

Intron
Length: 240
Transcript: HMGA1.mAug05

Intron
Length: 3419
Transcript: HMGA1.mAug05

Intron
Length: 1796
Transcript: HMGA1.mAug05

Intron
Length: 2050
Transcript: HMGA1.mAug05

Reaction
Expected peak: 271
Associated peak: 291,292,293,294,300,302,304,305
Repeated 51 time
Molarity: 13.74M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Reaction
Expected peak: 307
Associated peak: 307,309,310,311,312
Repeated 51 time
Molarity: 3.13M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Exon
Length: 165
Transcript: HMGA1.nAug05

Exon
Length: 179
Transcript: HMGA1.nAug05

Exon
Length: 69
Transcript: HMGA1.nAug05

Exon
Length: 440
Transcript: HMGA1.nAug05

Intron
Length: 3419
Transcript: HMGA1.nAug05

Intron
Length: 1796
Transcript: HMGA1.nAug05

Intron
Length: 2050
Transcript: HMGA1.nAug05

Reaction
Expected peak: 271
Associated peak: 291,292,293,294,300,302,304,305
Repeated 51 time
Molarity: 13.74M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 51
Transcript: HMGA1.oAug05

Exon
Length: 114
Transcript: HMGA1.oAug05

Exon
Length: 179
Transcript: HMGA1.oAug05

Exon
Length: 66
Transcript: HMGA1.oAug05

Exon
Length: 452
Transcript: HMGA1.oAug05

Intron
Length: 240
Transcript: HMGA1.oAug05

Intron
Length: 3419
Transcript: HMGA1.oAug05

Intron
Length: 1799
Transcript: HMGA1.oAug05

Intron
Length: 2050
Transcript: HMGA1.oAug05

Reaction
Expected peak: 268
Associated peak: 291,292,293,294,300,302
Repeated 51 time
Molarity: 6.23M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Reaction
Expected peak: 307
Associated peak: 307,309,310,311,312
Repeated 51 time
Molarity: 3.13M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Exon
Length: 103
Transcript: HMGA1.pAug05

Exon
Length: 146
Transcript: HMGA1.pAug05

Exon
Length: 84
Transcript: HMGA1.pAug05

Exon
Length: 51
Transcript: HMGA1.pAug05

Exon
Length: 202
Transcript: HMGA1.pAug05

Intron
Length: 3021
Transcript: HMGA1.pAug05

Intron
Length: 1829
Transcript: HMGA1.pAug05

Intron
Length: 672
Transcript: HMGA1.pAug05

Intron
Length: 1312
Transcript: HMGA1.pAug05

Reaction
Expected peak: 304
Associated peak: 300,302,304,305,307,309,310,313
Repeated 51 time
Molarity: 26.35M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 50
Transcript: HMGA1.qAug05

Exon
Length: 114
Transcript: HMGA1.qAug05

Exon
Length: 146
Transcript: HMGA1.qAug05

Exon
Length: 69
Transcript: HMGA1.qAug05

Exon
Length: 511
Transcript: HMGA1.qAug05

Intron
Length: 240
Transcript: HMGA1.qAug05

Intron
Length: 3419
Transcript: HMGA1.qAug05

Intron
Length: 1829
Transcript: HMGA1.qAug05

Intron
Length: 2050
Transcript: HMGA1.qAug05

Reaction
Expected peak: 238
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Reaction
Expected peak: 307
Associated peak: 307,309,310,311,312
Repeated 51 time
Molarity: 3.13M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Exon
Length: 131
Transcript: HMGA1.rAug05

Exon
Length: 179
Transcript: HMGA1.rAug05

Exon
Length: 66
Transcript: HMGA1.rAug05

Exon
Length: 193
Transcript: HMGA1.rAug05

Intron
Length: 3419
Transcript: HMGA1.rAug05

Intron
Length: 1799
Transcript: HMGA1.rAug05

Intron
Length: 2050
Transcript: HMGA1.rAug05

Reaction
Expected peak: 268
Associated peak: 291,292,293,294,300,302
Repeated 51 time
Molarity: 6.23M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 56
Transcript: HMGA1.sAug05

Exon
Length: 114
Transcript: HMGA1.sAug05

Exon
Length: 146
Transcript: HMGA1.sAug05

Exon
Length: 84
Transcript: HMGA1.sAug05

Exon
Length: 21
Transcript: HMGA1.sAug05

Intron
Length: 242
Transcript: HMGA1.sAug05

Intron
Length: 3419
Transcript: HMGA1.sAug05

Intron
Length: 1829
Transcript: HMGA1.sAug05

Intron
Length: 672
Transcript: HMGA1.sAug05

Reaction
Expected peak: 305
Associated peak: 307,309,310,311,312
Repeated 51 time
Molarity: 3.13M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Exon
Length: 739
Transcript: HMGA1.shed1.aAug05

Exon
Length: 767
Transcript: HMGA1.shed2.aAug05

Exon
Length: 665
Transcript: HMGA1.shed3.aAug05

Exon
Length: 115
Transcript: HMGA1.tAug05

Exon
Length: 179
Transcript: HMGA1.tAug05

Exon
Length: 84
Transcript: HMGA1.tAug05

Exon
Length: 51
Transcript: HMGA1.tAug05

Exon
Length: 1400
Transcript: HMGA1.tAug05

Intron
Length: 3773
Transcript: HMGA1.tAug05

Intron
Length: 1796
Transcript: HMGA1.tAug05

Intron
Length: 672
Transcript: HMGA1.tAug05

Intron
Length: 1312
Transcript: HMGA1.tAug05

Reaction
Expected peak: 193
Associated peak: 203,204,205,206
Repeated 51 time
Molarity: 3.73M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Reaction
Expected peak: 337
Associated peak: 322,323,325,326,351,352,353,354,355,356,357,358,359,360,361,370,373
Repeated 51 time
Molarity: 18.96M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 91
Transcript: HMGA1.uAug05

Exon
Length: 179
Transcript: HMGA1.uAug05

Exon
Length: 81
Transcript: HMGA1.uAug05

Exon
Length: 51
Transcript: HMGA1.uAug05

Exon
Length: 769
Transcript: HMGA1.uAug05

Exon
Length: 592
Transcript: HMGA1.uAug05

Intron
Length: 3773
Transcript: HMGA1.uAug05

Intron
Length: 1799
Transcript: HMGA1.uAug05

Intron
Length: 672
Transcript: HMGA1.uAug05

Intron
Length: 1312
Transcript: HMGA1.uAug05

Intron
Length: 26
Transcript: HMGA1.uAug05

Reaction
Expected peak: 193
Associated peak: 203,204,205,206
Repeated 51 time
Molarity: 3.73M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Exon
Length: 60
Transcript: HMGA1.vaAug05

Exon
Length: 179
Transcript: HMGA1.vaAug05

Exon
Length: 84
Transcript: HMGA1.vaAug05

Exon
Length: 419
Transcript: HMGA1.vaAug05

Intron
Length: 3773
Transcript: HMGA1.vaAug05

Intron
Length: 1796
Transcript: HMGA1.vaAug05

Intron
Length: 672
Transcript: HMGA1.vaAug05

Reaction
Expected peak: 193
Associated peak: 203,204,205,206
Repeated 51 time
Molarity: 3.73M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Exon
Length: 70
Transcript: HMGA1.vbAug05

Exon
Length: 146
Transcript: HMGA1.vbAug05

Exon
Length: 84
Transcript: HMGA1.vbAug05

Exon
Length: 51
Transcript: HMGA1.vbAug05

Exon
Length: 124
Transcript: HMGA1.vbAug05

Intron
Length: 1350
Transcript: HMGA1.vbAug05

Intron
Length: 1829
Transcript: HMGA1.vbAug05

Intron
Length: 672
Transcript: HMGA1.vbAug05

Intron
Length: 1312
Transcript: HMGA1.vbAug05

Reaction
Expected peak: 304
Associated peak: 300,302,304,305,307,309,310,313
Repeated 51 time
Molarity: 26.35M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 29
Transcript: HMGA1.vcAug05

Exon
Length: 179
Transcript: HMGA1.vcAug05

Exon
Length: 84
Transcript: HMGA1.vcAug05

Exon
Length: 51
Transcript: HMGA1.vcAug05

Exon
Length: 164
Transcript: HMGA1.vcAug05

Intron
Length: 3835
Transcript: HMGA1.vcAug05

Intron
Length: 1796
Transcript: HMGA1.vcAug05

Intron
Length: 672
Transcript: HMGA1.vcAug05

Intron
Length: 1312
Transcript: HMGA1.vcAug05

Reaction
Expected peak: 131
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Reaction
Expected peak: 337
Associated peak: 322,323,325,326,351,352,353,354,355,356,357,358,359,360,361,370,373
Repeated 51 time
Molarity: 18.96M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 91
Transcript: HMGA1.vdAug05

Exon
Length: 146
Transcript: HMGA1.vdAug05

Exon
Length: 84
Transcript: HMGA1.vdAug05

Exon
Length: 51
Transcript: HMGA1.vdAug05

Exon
Length: 1401
Transcript: HMGA1.vdAug05

Intron
Length: 3773
Transcript: HMGA1.vdAug05

Intron
Length: 1829
Transcript: HMGA1.vdAug05

Intron
Length: 672
Transcript: HMGA1.vdAug05

Intron
Length: 1312
Transcript: HMGA1.vdAug05

Reaction
Expected peak: 193
Associated peak: 203,204,205,206
Repeated 51 time
Molarity: 3.73M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Reaction
Expected peak: 304
Associated peak: 300,302,304,305,307,309,310,313
Repeated 51 time
Molarity: 26.35M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 60
Transcript: HMGA1.veAug05

Exon
Length: 146
Transcript: HMGA1.veAug05

Exon
Length: 81
Transcript: HMGA1.veAug05

Exon
Length: 51
Transcript: HMGA1.veAug05

Exon
Length: 552
Transcript: HMGA1.veAug05

Intron
Length: 3773
Transcript: HMGA1.veAug05

Intron
Length: 1832
Transcript: HMGA1.veAug05

Intron
Length: 672
Transcript: HMGA1.veAug05

Intron
Length: 1312
Transcript: HMGA1.veAug05

Reaction
Expected peak: 193
Associated peak: 203,204,205,206
Repeated 51 time
Molarity: 3.73M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Reaction
Expected peak: 301
Associated peak: 300,302,304,305,307,309,310,313
Repeated 51 time
Molarity: 26.35M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 69
Transcript: HMGA1.vfAug05

Exon
Length: 179
Transcript: HMGA1.vfAug05

Exon
Length: 84
Transcript: HMGA1.vfAug05

Exon
Length: 51
Transcript: HMGA1.vfAug05

Exon
Length: 439
Transcript: HMGA1.vfAug05

Intron
Length: 3753
Transcript: HMGA1.vfAug05

Intron
Length: 1796
Transcript: HMGA1.vfAug05

Intron
Length: 672
Transcript: HMGA1.vfAug05

Intron
Length: 1312
Transcript: HMGA1.vfAug05

Reaction
Expected peak: 337
Associated peak: 322,323,325,326,351,352,353,354,355,356,357,358,359,360,361,370,373
Repeated 51 time
Molarity: 18.96M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 42
Transcript: HMGA1.vgAug05

Exon
Length: 146
Transcript: HMGA1.vgAug05

Exon
Length: 84
Transcript: HMGA1.vgAug05

Exon
Length: 51
Transcript: HMGA1.vgAug05

Exon
Length: 1399
Transcript: HMGA1.vgAug05

Intron
Length: 3775
Transcript: HMGA1.vgAug05

Intron
Length: 1829
Transcript: HMGA1.vgAug05

Intron
Length: 672
Transcript: HMGA1.vgAug05

Intron
Length: 1312
Transcript: HMGA1.vgAug05

Reaction
Expected peak: 191
Associated peak: 186,203,204,205,206
Repeated 51 time
Molarity: 3.76M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Reaction
Expected peak: 304
Associated peak: 300,302,304,305,307,309,310,313
Repeated 51 time
Molarity: 26.35M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 607
Transcript: HMGA1.vhAug05

Exon
Length: 179
Transcript: HMGA1.vhAug05

Exon
Length: 84
Transcript: HMGA1.vhAug05

Exon
Length: 51
Transcript: HMGA1.vhAug05

Exon
Length: 124
Transcript: HMGA1.vhAug05

Intron
Length: 500
Transcript: HMGA1.vhAug05

Intron
Length: 1796
Transcript: HMGA1.vhAug05

Intron
Length: 672
Transcript: HMGA1.vhAug05

Intron
Length: 1312
Transcript: HMGA1.vhAug05

Reaction
Expected peak: 337
Associated peak: 322,323,325,326,351,352,353,354,355,356,357,358,359,360,361,370,373
Repeated 51 time
Molarity: 18.96M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 22
Transcript: HMGA1.viAug05

Exon
Length: 146
Transcript: HMGA1.viAug05

Exon
Length: 84
Transcript: HMGA1.viAug05

Exon
Length: 1198
Transcript: HMGA1.viAug05

Intron
Length: 3773
Transcript: HMGA1.viAug05

Intron
Length: 1829
Transcript: HMGA1.viAug05

Intron
Length: 2237
Transcript: HMGA1.viAug05

Reaction
Expected peak: 193
Associated peak: 203,204,205,206
Repeated 51 time
Molarity: 3.73M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Exon
Length: 241
Transcript: HMGA1.vjAug05

Exon
Length: 146
Transcript: HMGA1.vjAug05

Exon
Length: 84
Transcript: HMGA1.vjAug05

Exon
Length: 51
Transcript: HMGA1.vjAug05

Exon
Length: 1379
Transcript: HMGA1.vjAug05

Intron
Length: 2352
Transcript: HMGA1.vjAug05

Intron
Length: 1829
Transcript: HMGA1.vjAug05

Intron
Length: 672
Transcript: HMGA1.vjAug05

Intron
Length: 1312
Transcript: HMGA1.vjAug05

Reaction
Expected peak: 304
Associated peak: 300,302,304,305,307,309,310,313
Repeated 51 time
Molarity: 26.35M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 241
Transcript: HMGA1.vkAug05

Exon
Length: 146
Transcript: HMGA1.vkAug05

Exon
Length: 81
Transcript: HMGA1.vkAug05

Exon
Length: 51
Transcript: HMGA1.vkAug05

Exon
Length: 431
Transcript: HMGA1.vkAug05

Intron
Length: 2352
Transcript: HMGA1.vkAug05

Intron
Length: 1832
Transcript: HMGA1.vkAug05

Intron
Length: 672
Transcript: HMGA1.vkAug05

Intron
Length: 1312
Transcript: HMGA1.vkAug05

Reaction
Expected peak: 301
Associated peak: 300,302,304,305,307,309,310,313
Repeated 51 time
Molarity: 26.35M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 168
Transcript: HMGA1.vlAug05

Exon
Length: 146
Transcript: HMGA1.vlAug05

Exon
Length: 84
Transcript: HMGA1.vlAug05

Exon
Length: 51
Transcript: HMGA1.vlAug05

Exon
Length: 1401
Transcript: HMGA1.vlAug05

Intron
Length: 1779
Transcript: HMGA1.vlAug05

Intron
Length: 1829
Transcript: HMGA1.vlAug05

Intron
Length: 672
Transcript: HMGA1.vlAug05

Intron
Length: 1312
Transcript: HMGA1.vlAug05

Reaction
Expected peak: 304
Associated peak: 300,302,304,305,307,309,310,313
Repeated 51 time
Molarity: 26.35M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 25
Transcript: HMGA1.vmAug05

Exon
Length: 179
Transcript: HMGA1.vmAug05

Exon
Length: 69
Transcript: HMGA1.vmAug05

Exon
Length: 124
Transcript: HMGA1.vmAug05

Intron
Length: 3773
Transcript: HMGA1.vmAug05

Intron
Length: 1796
Transcript: HMGA1.vmAug05

Intron
Length: 2050
Transcript: HMGA1.vmAug05

Reaction
Expected peak: 193
Associated peak: 203,204,205,206
Repeated 51 time
Molarity: 3.73M
Forward: HMGA1.u.f.5
Reverse: HMGA1.u.r.9

Reaction
Expected peak: 271
Associated peak: 291,292,293,294,300,302,304,305
Repeated 51 time
Molarity: 13.74M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

Exon
Length: 93
Transcript: HMGA1.vnAug05

Exon
Length: 179
Transcript: HMGA1.vnAug05

Exon
Length: 1371
Transcript: HMGA1.vnAug05

Intron
Length: 3419
Transcript: HMGA1.vnAug05

Intron
Length: 3915
Transcript: HMGA1.vnAug05

Reaction
Expected peak: 202
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: HMGA1.au.0.f
Reverse: HMGA1.u.r.18

HMGA1.u.r.18
GAGATGCCCTCCTCTTCCTC

HMGA1.u.f.5
CCCTGAGCCGGTGCT

HMGA1.u.r.9
GCTTCTCAGTGCCGTCCTT

HMGA1.au.0.f
CCCAGCCATCACTCTTCC

Gene primer pair list : Primer pairs

Forward	Reverse	Occurences	View
HMGA1.au.0.f	HMGA1.u.r.18	51	View
HMGA1.u.f.5	HMGA1.u.r.9	51	View

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