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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: LTA
Exon
Length: 167
Transcript: LTA.aAug05
Length: 167
Transcript: LTA.aAug05
Exon
Length: 108
Transcript: LTA.aAug05
Length: 108
Transcript: LTA.aAug05
Exon
Length: 106
Transcript: LTA.aAug05
Length: 106
Transcript: LTA.aAug05
Exon
Length: 1042
Transcript: LTA.aAug05
Length: 1042
Transcript: LTA.aAug05
Intron
Length: 287
Transcript: LTA.aAug05
Length: 287
Transcript: LTA.aAug05
Intron
Length: 86
Transcript: LTA.aAug05
Length: 86
Transcript: LTA.aAug05
Intron
Length: 247
Transcript: LTA.aAug05
Length: 247
Transcript: LTA.aAug05
Reaction
Expected peak: 561
Associated peak: 592,595,597,600,603,605,606,608,609,611,614
Repeated 51 time
Molarity: 6.91M
Forward: LTA.F6
Reverse: LTA.R5
Expected peak: 561
Associated peak: 592,595,597,600,603,605,606,608,609,611,614
Repeated 51 time
Molarity: 6.91M
Forward: LTA.F6
Reverse: LTA.R5
Exon
Length: 398
Transcript: LTA.bAug05
Length: 398
Transcript: LTA.bAug05
Exon
Length: 108
Transcript: LTA.bAug05
Length: 108
Transcript: LTA.bAug05
Exon
Length: 106
Transcript: LTA.bAug05
Length: 106
Transcript: LTA.bAug05
Exon
Length: 242
Transcript: LTA.bAug05
Length: 242
Transcript: LTA.bAug05
Intron
Length: 431
Transcript: LTA.bAug05
Length: 431
Transcript: LTA.bAug05
Intron
Length: 86
Transcript: LTA.bAug05
Length: 86
Transcript: LTA.bAug05
Intron
Length: 247
Transcript: LTA.bAug05
Length: 247
Transcript: LTA.bAug05
Reaction
Expected peak: 561
Associated peak: 592,595,597,600,603,605,606,608,609,611,614
Repeated 51 time
Molarity: 6.91M
Forward: LTA.F6
Reverse: LTA.R5
Expected peak: 561
Associated peak: 592,595,597,600,603,605,606,608,609,611,614
Repeated 51 time
Molarity: 6.91M
Forward: LTA.F6
Reverse: LTA.R5
Exon
Length: 33
Transcript: LTA.cAug05
Length: 33
Transcript: LTA.cAug05
Exon
Length: 300
Transcript: LTA.cAug05
Length: 300
Transcript: LTA.cAug05
Exon
Length: 381
Transcript: LTA.cAug05
Length: 381
Transcript: LTA.cAug05
Intron
Length: 431
Transcript: LTA.cAug05
Length: 431
Transcript: LTA.cAug05
Intron
Length: 247
Transcript: LTA.cAug05
Length: 247
Transcript: LTA.cAug05
Reaction
Expected peak: 561
Associated peak: 592,595,597,600,603,605,606,608,609,611,614
Repeated 51 time
Molarity: 6.91M
Forward: LTA.F6
Reverse: LTA.R5
Expected peak: 561
Associated peak: 592,595,597,600,603,605,606,608,609,611,614
Repeated 51 time
Molarity: 6.91M
Forward: LTA.F6
Reverse: LTA.R5
Exon
Length: 61
Transcript: LTA.dAug05
Length: 61
Transcript: LTA.dAug05
Exon
Length: 131
Transcript: LTA.dAug05
Length: 131
Transcript: LTA.dAug05
Exon
Length: 328
Transcript: LTA.dAug05
Length: 328
Transcript: LTA.dAug05
Intron
Length: 247
Transcript: LTA.dAug05
Length: 247
Transcript: LTA.dAug05
Intron
Length: 113
Transcript: LTA.dAug05
Length: 113
Transcript: LTA.dAug05
Reaction
Expected peak: 448
Associated peak: 446,480
Repeated 51 time
Molarity: 0.02M
Forward: LTA.F6
Reverse: LTA.R5
Expected peak: 448
Associated peak: 446,480
Repeated 51 time
Molarity: 0.02M
Forward: LTA.F6
Reverse: LTA.R5
Exon
Length: 144
Transcript: LTA.eAug05
Length: 144
Transcript: LTA.eAug05
Exon
Length: 300
Transcript: LTA.eAug05
Length: 300
Transcript: LTA.eAug05
Exon
Length: 332
Transcript: LTA.eAug05
Length: 332
Transcript: LTA.eAug05
Intron
Length: 287
Transcript: LTA.eAug05
Length: 287
Transcript: LTA.eAug05
Intron
Length: 247
Transcript: LTA.eAug05
Length: 247
Transcript: LTA.eAug05
Reaction
Expected peak: 561
Associated peak: 592,595,597,600,603,605,606,608,609,611,614
Repeated 51 time
Molarity: 6.91M
Forward: LTA.F6
Reverse: LTA.R5
Expected peak: 561
Associated peak: 592,595,597,600,603,605,606,608,609,611,614
Repeated 51 time
Molarity: 6.91M
Forward: LTA.F6
Reverse: LTA.R5
Exon
Length: 61
Transcript: LTA.fAug05
Length: 61
Transcript: LTA.fAug05
Exon
Length: 131
Transcript: LTA.fAug05
Length: 131
Transcript: LTA.fAug05
Exon
Length: 80
Transcript: LTA.fAug05
Length: 80
Transcript: LTA.fAug05
Intron
Length: 247
Transcript: LTA.fAug05
Length: 247
Transcript: LTA.fAug05
Intron
Length: 361
Transcript: LTA.fAug05
Length: 361
Transcript: LTA.fAug05
Reaction
Expected peak: 200
Associated peak: 214,215,217
Repeated 51 time
Molarity: 0.15M
Forward: LTA.F6
Reverse: LTA.R5
Expected peak: 200
Associated peak: 214,215,217
Repeated 51 time
Molarity: 0.15M
Forward: LTA.F6
Reverse: LTA.R5
Exon
Length: 61
Transcript: LTA.gAug05
Length: 61
Transcript: LTA.gAug05
Exon
Length: 326
Transcript: LTA.gAug05
Length: 326
Transcript: LTA.gAug05
Intron
Length: 491
Transcript: LTA.gAug05
Length: 491
Transcript: LTA.gAug05
Reaction
Expected peak: 317
Associated peak: 334
Repeated 51 time
Molarity: 0.02M
Forward: LTA.F6
Reverse: LTA.R5
Expected peak: 317
Associated peak: 334
Repeated 51 time
Molarity: 0.02M
Forward: LTA.F6
Reverse: LTA.R5
Exon
Length: 61
Transcript: LTA.hAug05
Length: 61
Transcript: LTA.hAug05
Exon
Length: 78
Transcript: LTA.hAug05
Length: 78
Transcript: LTA.hAug05
Intron
Length: 739
Transcript: LTA.hAug05
Length: 739
Transcript: LTA.hAug05
Reaction
Expected peak: 69
Associated peak: 67,68,69,70
Repeated 51 time
Molarity: 11.49M
Forward: LTA.F6
Reverse: LTA.R5
Expected peak: 69
Associated peak: 67,68,69,70
Repeated 51 time
Molarity: 11.49M
Forward: LTA.F6
Reverse: LTA.R5
LTA.R5
CAAAGGAGAGGTGGTGACGA
CAAAGGAGAGGTGGTGACGA
LTA.F6
ATGCATCTTGCCCACAGC
ATGCATCTTGCCCACAGC