2. Breast Validation Screen - Rnomics 📊 Palace

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Home Public data LGFUS Public Data Identification of alternative splicing markers for breast cancer 2. Breast Validation Screen

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https://rnomics.med.usherbrooke.ca/palace?purl=/data/related/3/gene/451119

2. Breast Validation Screen ⚙

Transcript map : ABCB1

Exon
Length: 251
Transcript: ABCB1.aAug05

Exon
Length: 324
Transcript: ABCB1.aAug05

Exon
Length: 74
Transcript: ABCB1.aAug05

Exon
Length: 49
Transcript: ABCB1.aAug05

Exon
Length: 169
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Length: 52
Transcript: ABCB1.aAug05

Exon
Length: 192
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Length: 172
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Exon
Length: 125
Transcript: ABCB1.aAug05

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Length: 172
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Exon
Length: 114
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Exon
Length: 111
Transcript: ABCB1.aAug05

Exon
Length: 126
Transcript: ABCB1.aAug05

Exon
Length: 204
Transcript: ABCB1.aAug05

Exon
Length: 171
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Length: 162
Transcript: ABCB1.aAug05

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Length: 177
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Length: 147
Transcript: ABCB1.aAug05

Exon
Length: 108
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Length: 78
Transcript: ABCB1.aAug05

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Length: 84
Transcript: ABCB1.aAug05

Exon
Length: 204
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Length: 101
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Length: 141
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Length: 157
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Length: 198
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Length: 207
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Length: 147
Transcript: ABCB1.aAug05

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Length: 1426
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Length: 543
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Length: 4682
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Length: 7330
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Length: 2011
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Length: 1080
Transcript: ABCB1.aAug05

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Length: 5749
Transcript: ABCB1.aAug05

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Length: 3231
Transcript: ABCB1.aAug05

Intron
Length: 1447
Transcript: ABCB1.aAug05

Reaction
Expected peak: 328
Associated peak: 328,329,330,331,332,333,334,336
Repeated 51 time
Molarity: 3.23M
Forward: ABCB1.F1
Reverse: ABCB1.R3

Reaction
Expected peak: 336
Associated peak: 336,337,338,339,340,341,342,343,344,345,347,349
Repeated 51 time
Molarity: 3.52M
Forward: ABCB1.F2
Reverse: ABCB1.R4

Exon
Length: 25
Transcript: ABCB1.bAug05

Exon
Length: 84
Transcript: ABCB1.bAug05

Exon
Length: 204
Transcript: ABCB1.bAug05

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Length: 101
Transcript: ABCB1.bAug05

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Length: 141
Transcript: ABCB1.bAug05

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Length: 157
Transcript: ABCB1.bAug05

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Length: 198
Transcript: ABCB1.bAug05

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Length: 496
Transcript: ABCB1.bAug05

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Length: 4960
Transcript: ABCB1.bAug05

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Length: 10417
Transcript: ABCB1.bAug05

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Length: 1309
Transcript: ABCB1.bAug05

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Length: 2660
Transcript: ABCB1.bAug05

Intron
Length: 1080
Transcript: ABCB1.bAug05

Exon
Length: 83
Transcript: ABCB1.cAug05

Exon
Length: 157
Transcript: ABCB1.cAug05

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Length: 198
Transcript: ABCB1.cAug05

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Length: 207
Transcript: ABCB1.cAug05

Exon
Length: 142
Transcript: ABCB1.cAug05

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Length: 2215
Transcript: ABCB1.cAug05

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Length: 1080
Transcript: ABCB1.cAug05

Intron
Length: 5749
Transcript: ABCB1.cAug05

Intron
Length: 3231
Transcript: ABCB1.cAug05

Exon
Length: 344
Transcript: ABCB1.dAug05

Exon
Length: 141
Transcript: ABCB1.dAug05

Exon
Length: 157
Transcript: ABCB1.dAug05

Exon
Length: 107
Transcript: ABCB1.dAug05

Intron
Length: 1309
Transcript: ABCB1.dAug05

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Length: 2660
Transcript: ABCB1.dAug05

Intron
Length: 1080
Transcript: ABCB1.dAug05

Exon
Length: 87
Transcript: ABCB1.eAug05

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Length: 106
Transcript: ABCB1.eAug05

Exon
Length: 71
Transcript: ABCB1.eAug05

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Length: 74
Transcript: ABCB1.eAug05

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Length: 112089
Transcript: ABCB1.eAug05

Intron
Length: 147
Transcript: ABCB1.eAug05

Intron
Length: 564
Transcript: ABCB1.eAug05

Reaction
Expected peak: 181
Associated peak: 187,188,189,190,191,192
Repeated 51 time
Molarity: 4.22M
Forward: ABCB1.F1
Reverse: ABCB1.R3

Reaction
Expected peak: 189
Associated peak: 194,195,196,197,198,199
Repeated 51 time
Molarity: 4.81M
Forward: ABCB1.F2
Reverse: ABCB1.R4

Exon
Length: 87
Transcript: ABCB1.fAug05

Exon
Length: 106
Transcript: ABCB1.fAug05

Exon
Length: 74
Transcript: ABCB1.fAug05

Intron
Length: 112089
Transcript: ABCB1.fAug05

Intron
Length: 782
Transcript: ABCB1.fAug05

Reaction
Expected peak: 110
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: ABCB1.F1
Reverse: ABCB1.R3

Reaction
Expected peak: 118
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: ABCB1.F2
Reverse: ABCB1.R4

Exon
Length: 409
Transcript: ABCB1.shed1.aAug05

ABCB1.F2
AACGGAAGCCAGAACATTCC

ABCB1.R4
CCTTCAAGATCCATTCCGAC

ABCB1.F1
ACCTGTTTCGCAGTTTCTCG

ABCB1.R3
CTTCTTTGCTCCTCCATTGC

Gene primer pair list : Primer pairs

Forward	Reverse	Occurences	View
ABCB1.F1	ABCB1.R3	51	View
ABCB1.F2	ABCB1.R4	51	View

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