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Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: POLM
Exon
Length: 235
Transcript: POLM.aAug05
Length: 235
Transcript: POLM.aAug05
Exon
Length: 184
Transcript: POLM.aAug05
Length: 184
Transcript: POLM.aAug05
Exon
Length: 99
Transcript: POLM.aAug05
Length: 99
Transcript: POLM.aAug05
Exon
Length: 171
Transcript: POLM.aAug05
Length: 171
Transcript: POLM.aAug05
Exon
Length: 56
Transcript: POLM.aAug05
Length: 56
Transcript: POLM.aAug05
Exon
Length: 133
Transcript: POLM.aAug05
Length: 133
Transcript: POLM.aAug05
Exon
Length: 243
Transcript: POLM.aAug05
Length: 243
Transcript: POLM.aAug05
Exon
Length: 84
Transcript: POLM.aAug05
Length: 84
Transcript: POLM.aAug05
Exon
Length: 1467
Transcript: POLM.aAug05
Length: 1467
Transcript: POLM.aAug05
Intron
Length: 1334
Transcript: POLM.aAug05
Length: 1334
Transcript: POLM.aAug05
Intron
Length: 773
Transcript: POLM.aAug05
Length: 773
Transcript: POLM.aAug05
Intron
Length: 119
Transcript: POLM.aAug05
Length: 119
Transcript: POLM.aAug05
Intron
Length: 759
Transcript: POLM.aAug05
Length: 759
Transcript: POLM.aAug05
Intron
Length: 4225
Transcript: POLM.aAug05
Length: 4225
Transcript: POLM.aAug05
Intron
Length: 372
Transcript: POLM.aAug05
Length: 372
Transcript: POLM.aAug05
Intron
Length: 74
Transcript: POLM.aAug05
Length: 74
Transcript: POLM.aAug05
Intron
Length: 194
Transcript: POLM.aAug05
Length: 194
Transcript: POLM.aAug05
Reaction
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Exon
Length: 266
Transcript: POLM.bAug05
Length: 266
Transcript: POLM.bAug05
Exon
Length: 184
Transcript: POLM.bAug05
Length: 184
Transcript: POLM.bAug05
Exon
Length: 99
Transcript: POLM.bAug05
Length: 99
Transcript: POLM.bAug05
Exon
Length: 171
Transcript: POLM.bAug05
Length: 171
Transcript: POLM.bAug05
Exon
Length: 72
Transcript: POLM.bAug05
Length: 72
Transcript: POLM.bAug05
Exon
Length: 121
Transcript: POLM.bAug05
Length: 121
Transcript: POLM.bAug05
Exon
Length: 133
Transcript: POLM.bAug05
Length: 133
Transcript: POLM.bAug05
Exon
Length: 103
Transcript: POLM.bAug05
Length: 103
Transcript: POLM.bAug05
Exon
Length: 243
Transcript: POLM.bAug05
Length: 243
Transcript: POLM.bAug05
Exon
Length: 84
Transcript: POLM.bAug05
Length: 84
Transcript: POLM.bAug05
Exon
Length: 1134
Transcript: POLM.bAug05
Length: 1134
Transcript: POLM.bAug05
Intron
Length: 1334
Transcript: POLM.bAug05
Length: 1334
Transcript: POLM.bAug05
Intron
Length: 773
Transcript: POLM.bAug05
Length: 773
Transcript: POLM.bAug05
Intron
Length: 119
Transcript: POLM.bAug05
Length: 119
Transcript: POLM.bAug05
Intron
Length: 759
Transcript: POLM.bAug05
Length: 759
Transcript: POLM.bAug05
Intron
Length: 2110
Transcript: POLM.bAug05
Length: 2110
Transcript: POLM.bAug05
Intron
Length: 1978
Transcript: POLM.bAug05
Length: 1978
Transcript: POLM.bAug05
Intron
Length: 164
Transcript: POLM.bAug05
Length: 164
Transcript: POLM.bAug05
Intron
Length: 105
Transcript: POLM.bAug05
Length: 105
Transcript: POLM.bAug05
Intron
Length: 74
Transcript: POLM.bAug05
Length: 74
Transcript: POLM.bAug05
Intron
Length: 247
Transcript: POLM.bAug05
Length: 247
Transcript: POLM.bAug05
Reaction
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Exon
Length: 250
Transcript: POLM.cAug05
Length: 250
Transcript: POLM.cAug05
Exon
Length: 184
Transcript: POLM.cAug05
Length: 184
Transcript: POLM.cAug05
Exon
Length: 99
Transcript: POLM.cAug05
Length: 99
Transcript: POLM.cAug05
Exon
Length: 171
Transcript: POLM.cAug05
Length: 171
Transcript: POLM.cAug05
Exon
Length: 72
Transcript: POLM.cAug05
Length: 72
Transcript: POLM.cAug05
Exon
Length: 121
Transcript: POLM.cAug05
Length: 121
Transcript: POLM.cAug05
Exon
Length: 125
Transcript: POLM.cAug05
Length: 125
Transcript: POLM.cAug05
Exon
Length: 243
Transcript: POLM.cAug05
Length: 243
Transcript: POLM.cAug05
Exon
Length: 84
Transcript: POLM.cAug05
Length: 84
Transcript: POLM.cAug05
Exon
Length: 1128
Transcript: POLM.cAug05
Length: 1128
Transcript: POLM.cAug05
Intron
Length: 1334
Transcript: POLM.cAug05
Length: 1334
Transcript: POLM.cAug05
Intron
Length: 773
Transcript: POLM.cAug05
Length: 773
Transcript: POLM.cAug05
Intron
Length: 119
Transcript: POLM.cAug05
Length: 119
Transcript: POLM.cAug05
Intron
Length: 759
Transcript: POLM.cAug05
Length: 759
Transcript: POLM.cAug05
Intron
Length: 2110
Transcript: POLM.cAug05
Length: 2110
Transcript: POLM.cAug05
Intron
Length: 1986
Transcript: POLM.cAug05
Length: 1986
Transcript: POLM.cAug05
Intron
Length: 372
Transcript: POLM.cAug05
Length: 372
Transcript: POLM.cAug05
Intron
Length: 74
Transcript: POLM.cAug05
Length: 74
Transcript: POLM.cAug05
Intron
Length: 247
Transcript: POLM.cAug05
Length: 247
Transcript: POLM.cAug05
Reaction
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Exon
Length: 233
Transcript: POLM.dAug05
Length: 233
Transcript: POLM.dAug05
Exon
Length: 184
Transcript: POLM.dAug05
Length: 184
Transcript: POLM.dAug05
Exon
Length: 99
Transcript: POLM.dAug05
Length: 99
Transcript: POLM.dAug05
Exon
Length: 171
Transcript: POLM.dAug05
Length: 171
Transcript: POLM.dAug05
Exon
Length: 72
Transcript: POLM.dAug05
Length: 72
Transcript: POLM.dAug05
Exon
Length: 243
Transcript: POLM.dAug05
Length: 243
Transcript: POLM.dAug05
Exon
Length: 84
Transcript: POLM.dAug05
Length: 84
Transcript: POLM.dAug05
Exon
Length: 227
Transcript: POLM.dAug05
Length: 227
Transcript: POLM.dAug05
Intron
Length: 1334
Transcript: POLM.dAug05
Length: 1334
Transcript: POLM.dAug05
Intron
Length: 773
Transcript: POLM.dAug05
Length: 773
Transcript: POLM.dAug05
Intron
Length: 119
Transcript: POLM.dAug05
Length: 119
Transcript: POLM.dAug05
Intron
Length: 759
Transcript: POLM.dAug05
Length: 759
Transcript: POLM.dAug05
Intron
Length: 4714
Transcript: POLM.dAug05
Length: 4714
Transcript: POLM.dAug05
Intron
Length: 74
Transcript: POLM.dAug05
Length: 74
Transcript: POLM.dAug05
Intron
Length: 194
Transcript: POLM.dAug05
Length: 194
Transcript: POLM.dAug05
Reaction
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Exon
Length: 261
Transcript: POLM.eAug05
Length: 261
Transcript: POLM.eAug05
Exon
Length: 184
Transcript: POLM.eAug05
Length: 184
Transcript: POLM.eAug05
Exon
Length: 99
Transcript: POLM.eAug05
Length: 99
Transcript: POLM.eAug05
Exon
Length: 171
Transcript: POLM.eAug05
Length: 171
Transcript: POLM.eAug05
Exon
Length: 258
Transcript: POLM.eAug05
Length: 258
Transcript: POLM.eAug05
Exon
Length: 117
Transcript: POLM.eAug05
Length: 117
Transcript: POLM.eAug05
Exon
Length: 121
Transcript: POLM.eAug05
Length: 121
Transcript: POLM.eAug05
Exon
Length: 748
Transcript: POLM.eAug05
Length: 748
Transcript: POLM.eAug05
Exon
Length: 84
Transcript: POLM.eAug05
Length: 84
Transcript: POLM.eAug05
Exon
Length: 1174
Transcript: POLM.eAug05
Length: 1174
Transcript: POLM.eAug05
Intron
Length: 1334
Transcript: POLM.eAug05
Length: 1334
Transcript: POLM.eAug05
Intron
Length: 773
Transcript: POLM.eAug05
Length: 773
Transcript: POLM.eAug05
Intron
Length: 119
Transcript: POLM.eAug05
Length: 119
Transcript: POLM.eAug05
Intron
Length: 759
Transcript: POLM.eAug05
Length: 759
Transcript: POLM.eAug05
Intron
Length: 115
Transcript: POLM.eAug05
Length: 115
Transcript: POLM.eAug05
Intron
Length: 1692
Transcript: POLM.eAug05
Length: 1692
Transcript: POLM.eAug05
Intron
Length: 1978
Transcript: POLM.eAug05
Length: 1978
Transcript: POLM.eAug05
Intron
Length: 74
Transcript: POLM.eAug05
Length: 74
Transcript: POLM.eAug05
Intron
Length: 194
Transcript: POLM.eAug05
Length: 194
Transcript: POLM.eAug05
Reaction
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Exon
Length: 240
Transcript: POLM.fAug05
Length: 240
Transcript: POLM.fAug05
Exon
Length: 184
Transcript: POLM.fAug05
Length: 184
Transcript: POLM.fAug05
Exon
Length: 72
Transcript: POLM.fAug05
Length: 72
Transcript: POLM.fAug05
Exon
Length: 400
Transcript: POLM.fAug05
Length: 400
Transcript: POLM.fAug05
Exon
Length: 243
Transcript: POLM.fAug05
Length: 243
Transcript: POLM.fAug05
Exon
Length: 84
Transcript: POLM.fAug05
Length: 84
Transcript: POLM.fAug05
Exon
Length: 1181
Transcript: POLM.fAug05
Length: 1181
Transcript: POLM.fAug05
Intron
Length: 1334
Transcript: POLM.fAug05
Length: 1334
Transcript: POLM.fAug05
Intron
Length: 1921
Transcript: POLM.fAug05
Length: 1921
Transcript: POLM.fAug05
Intron
Length: 4209
Transcript: POLM.fAug05
Length: 4209
Transcript: POLM.fAug05
Intron
Length: 105
Transcript: POLM.fAug05
Length: 105
Transcript: POLM.fAug05
Intron
Length: 74
Transcript: POLM.fAug05
Length: 74
Transcript: POLM.fAug05
Intron
Length: 194
Transcript: POLM.fAug05
Length: 194
Transcript: POLM.fAug05
Reaction
Expected peak: 316
Associated peak: 329,330,331,332,333,334,335,336,337,339,340,343,347
Repeated 51 time
Molarity: 2.95M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Expected peak: 316
Associated peak: 329,330,331,332,333,334,335,336,337,339,340,343,347
Repeated 51 time
Molarity: 2.95M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Exon
Length: 80
Transcript: POLM.gAug05
Length: 80
Transcript: POLM.gAug05
Exon
Length: 133
Transcript: POLM.gAug05
Length: 133
Transcript: POLM.gAug05
Exon
Length: 243
Transcript: POLM.gAug05
Length: 243
Transcript: POLM.gAug05
Exon
Length: 84
Transcript: POLM.gAug05
Length: 84
Transcript: POLM.gAug05
Exon
Length: 1161
Transcript: POLM.gAug05
Length: 1161
Transcript: POLM.gAug05
Intron
Length: 1978
Transcript: POLM.gAug05
Length: 1978
Transcript: POLM.gAug05
Intron
Length: 372
Transcript: POLM.gAug05
Length: 372
Transcript: POLM.gAug05
Intron
Length: 74
Transcript: POLM.gAug05
Length: 74
Transcript: POLM.gAug05
Intron
Length: 194
Transcript: POLM.gAug05
Length: 194
Transcript: POLM.gAug05
Exon
Length: 267
Transcript: POLM.hAug05
Length: 267
Transcript: POLM.hAug05
Exon
Length: 184
Transcript: POLM.hAug05
Length: 184
Transcript: POLM.hAug05
Exon
Length: 99
Transcript: POLM.hAug05
Length: 99
Transcript: POLM.hAug05
Exon
Length: 171
Transcript: POLM.hAug05
Length: 171
Transcript: POLM.hAug05
Exon
Length: 56
Transcript: POLM.hAug05
Length: 56
Transcript: POLM.hAug05
Exon
Length: 121
Transcript: POLM.hAug05
Length: 121
Transcript: POLM.hAug05
Exon
Length: 133
Transcript: POLM.hAug05
Length: 133
Transcript: POLM.hAug05
Exon
Length: 90
Transcript: POLM.hAug05
Length: 90
Transcript: POLM.hAug05
Exon
Length: 243
Transcript: POLM.hAug05
Length: 243
Transcript: POLM.hAug05
Exon
Length: 84
Transcript: POLM.hAug05
Length: 84
Transcript: POLM.hAug05
Exon
Length: 1116
Transcript: POLM.hAug05
Length: 1116
Transcript: POLM.hAug05
Intron
Length: 1334
Transcript: POLM.hAug05
Length: 1334
Transcript: POLM.hAug05
Intron
Length: 773
Transcript: POLM.hAug05
Length: 773
Transcript: POLM.hAug05
Intron
Length: 119
Transcript: POLM.hAug05
Length: 119
Transcript: POLM.hAug05
Intron
Length: 759
Transcript: POLM.hAug05
Length: 759
Transcript: POLM.hAug05
Intron
Length: 2126
Transcript: POLM.hAug05
Length: 2126
Transcript: POLM.hAug05
Intron
Length: 1978
Transcript: POLM.hAug05
Length: 1978
Transcript: POLM.hAug05
Intron
Length: 177
Transcript: POLM.hAug05
Length: 177
Transcript: POLM.hAug05
Intron
Length: 105
Transcript: POLM.hAug05
Length: 105
Transcript: POLM.hAug05
Intron
Length: 74
Transcript: POLM.hAug05
Length: 74
Transcript: POLM.hAug05
Intron
Length: 247
Transcript: POLM.hAug05
Length: 247
Transcript: POLM.hAug05
Reaction
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Exon
Length: 228
Transcript: POLM.iAug05
Length: 228
Transcript: POLM.iAug05
Exon
Length: 184
Transcript: POLM.iAug05
Length: 184
Transcript: POLM.iAug05
Exon
Length: 99
Transcript: POLM.iAug05
Length: 99
Transcript: POLM.iAug05
Exon
Length: 171
Transcript: POLM.iAug05
Length: 171
Transcript: POLM.iAug05
Exon
Length: 56
Transcript: POLM.iAug05
Length: 56
Transcript: POLM.iAug05
Exon
Length: 897
Transcript: POLM.iAug05
Length: 897
Transcript: POLM.iAug05
Intron
Length: 1334
Transcript: POLM.iAug05
Length: 1334
Transcript: POLM.iAug05
Intron
Length: 773
Transcript: POLM.iAug05
Length: 773
Transcript: POLM.iAug05
Intron
Length: 119
Transcript: POLM.iAug05
Length: 119
Transcript: POLM.iAug05
Intron
Length: 759
Transcript: POLM.iAug05
Length: 759
Transcript: POLM.iAug05
Intron
Length: 2126
Transcript: POLM.iAug05
Length: 2126
Transcript: POLM.iAug05
Reaction
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Expected peak: 586
Associated peak: 619,624,629,630,631,632,633,635,637,638,641,642,643
Repeated 51 time
Molarity: 12.27M
Forward: POLM.u.f.1
Reverse: POLM.u.r.6
Exon
Length: 32
Transcript: POLM.jAug05
Length: 32
Transcript: POLM.jAug05
Exon
Length: 243
Transcript: POLM.jAug05
Length: 243
Transcript: POLM.jAug05
Exon
Length: 488
Transcript: POLM.jAug05
Length: 488
Transcript: POLM.jAug05
Intron
Length: 105
Transcript: POLM.jAug05
Length: 105
Transcript: POLM.jAug05
Intron
Length: 74
Transcript: POLM.jAug05
Length: 74
Transcript: POLM.jAug05
Exon
Length: 835
Transcript: POLM.kAug05
Length: 835
Transcript: POLM.kAug05
Exon
Length: 243
Transcript: POLM.kAug05
Length: 243
Transcript: POLM.kAug05
Exon
Length: 84
Transcript: POLM.kAug05
Length: 84
Transcript: POLM.kAug05
Exon
Length: 458
Transcript: POLM.kAug05
Length: 458
Transcript: POLM.kAug05
Intron
Length: 105
Transcript: POLM.kAug05
Length: 105
Transcript: POLM.kAug05
Intron
Length: 74
Transcript: POLM.kAug05
Length: 74
Transcript: POLM.kAug05
Intron
Length: 247
Transcript: POLM.kAug05
Length: 247
Transcript: POLM.kAug05
Exon
Length: 280
Transcript: POLM.lAug05
Length: 280
Transcript: POLM.lAug05
Exon
Length: 184
Transcript: POLM.lAug05
Length: 184
Transcript: POLM.lAug05
Exon
Length: 99
Transcript: POLM.lAug05
Length: 99
Transcript: POLM.lAug05
Exon
Length: 24
Transcript: POLM.lAug05
Length: 24
Transcript: POLM.lAug05
Intron
Length: 1334
Transcript: POLM.lAug05
Length: 1334
Transcript: POLM.lAug05
Intron
Length: 773
Transcript: POLM.lAug05
Length: 773
Transcript: POLM.lAug05
Intron
Length: 104
Transcript: POLM.lAug05
Length: 104
Transcript: POLM.lAug05
Exon
Length: 250
Transcript: POLM.mAug05
Length: 250
Transcript: POLM.mAug05
Exon
Length: 184
Transcript: POLM.mAug05
Length: 184
Transcript: POLM.mAug05
Exon
Length: 107
Transcript: POLM.mAug05
Length: 107
Transcript: POLM.mAug05
Exon
Length: 99
Transcript: POLM.mAug05
Length: 99
Transcript: POLM.mAug05
Exon
Length: 171
Transcript: POLM.mAug05
Length: 171
Transcript: POLM.mAug05
Intron
Length: 1334
Transcript: POLM.mAug05
Length: 1334
Transcript: POLM.mAug05
Intron
Length: 261
Transcript: POLM.mAug05
Length: 261
Transcript: POLM.mAug05
Intron
Length: 405
Transcript: POLM.mAug05
Length: 405
Transcript: POLM.mAug05
Intron
Length: 119
Transcript: POLM.mAug05
Length: 119
Transcript: POLM.mAug05
Exon
Length: 307
Transcript: POLM.nAug05
Length: 307
Transcript: POLM.nAug05
Exon
Length: 248
Transcript: POLM.nAug05
Length: 248
Transcript: POLM.nAug05
Intron
Length: 74
Transcript: POLM.nAug05
Length: 74
Transcript: POLM.nAug05
Exon
Length: 2629
Transcript: POLM.shed1.aAug05
Length: 2629
Transcript: POLM.shed1.aAug05
POLM.u.r.6
TCCTCACACACTCCATGCTC
TCCTCACACACTCCATGCTC
POLM.u.f.1
GAGTCGCCATCTACCTGGTC
GAGTCGCCATCTACCTGGTC