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Home Public data LGFUS Public Data Identification of alternative splicing markers for breast cancer 2. Breast Validation Screen

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https://rnomics.med.usherbrooke.ca/palace?purl=/data/related/3/gene/457218

2. Breast Validation Screen ⚙

Transcript map : CTSB

Exon
Length: 137
Transcript: CTSB.aAug05

Exon
Length: 151
Transcript: CTSB.aAug05

Exon
Length: 86
Transcript: CTSB.aAug05

Exon
Length: 115
Transcript: CTSB.aAug05

Exon
Length: 119
Transcript: CTSB.aAug05

Exon
Length: 86
Transcript: CTSB.aAug05

Exon
Length: 144
Transcript: CTSB.aAug05

Exon
Length: 117
Transcript: CTSB.aAug05

Exon
Length: 129
Transcript: CTSB.aAug05

Exon
Length: 2699
Transcript: CTSB.aAug05

Intron
Length: 14521
Transcript: CTSB.aAug05

Intron
Length: 633
Transcript: CTSB.aAug05

Intron
Length: 1629
Transcript: CTSB.aAug05

Intron
Length: 1701
Transcript: CTSB.aAug05

Intron
Length: 893
Transcript: CTSB.aAug05

Intron
Length: 244
Transcript: CTSB.aAug05

Intron
Length: 510
Transcript: CTSB.aAug05

Intron
Length: 1262
Transcript: CTSB.aAug05

Intron
Length: 438
Transcript: CTSB.aAug05

Exon
Length: 137
Transcript: CTSB.bAug05

Exon
Length: 88
Transcript: CTSB.bAug05

Exon
Length: 74
Transcript: CTSB.bAug05

Exon
Length: 151
Transcript: CTSB.bAug05

Exon
Length: 86
Transcript: CTSB.bAug05

Exon
Length: 115
Transcript: CTSB.bAug05

Exon
Length: 119
Transcript: CTSB.bAug05

Exon
Length: 86
Transcript: CTSB.bAug05

Exon
Length: 144
Transcript: CTSB.bAug05

Exon
Length: 117
Transcript: CTSB.bAug05

Exon
Length: 129
Transcript: CTSB.bAug05

Exon
Length: 3089
Transcript: CTSB.bAug05

Intron
Length: 3537
Transcript: CTSB.bAug05

Intron
Length: 2896
Transcript: CTSB.bAug05

Intron
Length: 7926
Transcript: CTSB.bAug05

Intron
Length: 633
Transcript: CTSB.bAug05

Intron
Length: 1629
Transcript: CTSB.bAug05

Intron
Length: 1701
Transcript: CTSB.bAug05

Intron
Length: 893
Transcript: CTSB.bAug05

Intron
Length: 244
Transcript: CTSB.bAug05

Intron
Length: 510
Transcript: CTSB.bAug05

Intron
Length: 1262
Transcript: CTSB.bAug05

Intron
Length: 438
Transcript: CTSB.bAug05

Reaction
Expected peak: 176
Associated peak: 192,193,194,195
Repeated 51 time
Molarity: 23.46M
Forward: CTSB.F6
Reverse: CTSB.R2

Reaction
Expected peak: 195
Associated peak: 205,206,207,208,210,211,212,213,214,215
Repeated 51 time
Molarity: 7.66M
Forward: CTSB.F2
Reverse: CTSB.R6

Exon
Length: 137
Transcript: CTSB.cAug05

Exon
Length: 74
Transcript: CTSB.cAug05

Exon
Length: 151
Transcript: CTSB.cAug05

Exon
Length: 86
Transcript: CTSB.cAug05

Exon
Length: 115
Transcript: CTSB.cAug05

Exon
Length: 119
Transcript: CTSB.cAug05

Exon
Length: 86
Transcript: CTSB.cAug05

Exon
Length: 144
Transcript: CTSB.cAug05

Exon
Length: 117
Transcript: CTSB.cAug05

Exon
Length: 129
Transcript: CTSB.cAug05

Exon
Length: 2699
Transcript: CTSB.cAug05

Intron
Length: 6521
Transcript: CTSB.cAug05

Intron
Length: 7926
Transcript: CTSB.cAug05

Intron
Length: 633
Transcript: CTSB.cAug05

Intron
Length: 1629
Transcript: CTSB.cAug05

Intron
Length: 1701
Transcript: CTSB.cAug05

Intron
Length: 893
Transcript: CTSB.cAug05

Intron
Length: 244
Transcript: CTSB.cAug05

Intron
Length: 510
Transcript: CTSB.cAug05

Intron
Length: 1262
Transcript: CTSB.cAug05

Intron
Length: 438
Transcript: CTSB.cAug05

Reaction
Expected peak: 107
Associated peak: 109,110,111,112,113,116,117,118,119
Repeated 51 time
Molarity: 2.97M
Forward: CTSB.F2
Reverse: CTSB.R6

Reaction
Expected peak: 176
Associated peak: 192,193,194,195
Repeated 51 time
Molarity: 23.46M
Forward: CTSB.F6
Reverse: CTSB.R2

Exon
Length: 137
Transcript: CTSB.dAug05

Exon
Length: 88
Transcript: CTSB.dAug05

Exon
Length: 151
Transcript: CTSB.dAug05

Exon
Length: 86
Transcript: CTSB.dAug05

Exon
Length: 115
Transcript: CTSB.dAug05

Exon
Length: 119
Transcript: CTSB.dAug05

Exon
Length: 86
Transcript: CTSB.dAug05

Exon
Length: 144
Transcript: CTSB.dAug05

Exon
Length: 117
Transcript: CTSB.dAug05

Exon
Length: 129
Transcript: CTSB.dAug05

Exon
Length: 2699
Transcript: CTSB.dAug05

Intron
Length: 3537
Transcript: CTSB.dAug05

Intron
Length: 10896
Transcript: CTSB.dAug05

Intron
Length: 633
Transcript: CTSB.dAug05

Intron
Length: 1629
Transcript: CTSB.dAug05

Intron
Length: 1701
Transcript: CTSB.dAug05

Intron
Length: 893
Transcript: CTSB.dAug05

Intron
Length: 244
Transcript: CTSB.dAug05

Intron
Length: 510
Transcript: CTSB.dAug05

Intron
Length: 1262
Transcript: CTSB.dAug05

Intron
Length: 438
Transcript: CTSB.dAug05

Exon
Length: 137
Transcript: CTSB.eAug05

Exon
Length: 119
Transcript: CTSB.eAug05

Exon
Length: 151
Transcript: CTSB.eAug05

Exon
Length: 86
Transcript: CTSB.eAug05

Exon
Length: 115
Transcript: CTSB.eAug05

Exon
Length: 119
Transcript: CTSB.eAug05

Exon
Length: 86
Transcript: CTSB.eAug05

Exon
Length: 144
Transcript: CTSB.eAug05

Exon
Length: 117
Transcript: CTSB.eAug05

Exon
Length: 129
Transcript: CTSB.eAug05

Exon
Length: 2699
Transcript: CTSB.eAug05

Intron
Length: 6521
Transcript: CTSB.eAug05

Intron
Length: 7881
Transcript: CTSB.eAug05

Intron
Length: 633
Transcript: CTSB.eAug05

Intron
Length: 1629
Transcript: CTSB.eAug05

Intron
Length: 1701
Transcript: CTSB.eAug05

Intron
Length: 893
Transcript: CTSB.eAug05

Intron
Length: 244
Transcript: CTSB.eAug05

Intron
Length: 510
Transcript: CTSB.eAug05

Intron
Length: 1262
Transcript: CTSB.eAug05

Intron
Length: 438
Transcript: CTSB.eAug05

Reaction
Expected peak: 107
Associated peak: 109,110,111,112,113,116,117,118,119
Repeated 51 time
Molarity: 2.97M
Forward: CTSB.F2
Reverse: CTSB.R6

Reaction
Expected peak: 221
Associated peak: 218,237,238,239,240,241,242,243
Repeated 51 time
Molarity: 4.48M
Forward: CTSB.F6
Reverse: CTSB.R2

Exon
Length: 135
Transcript: CTSB.fAug05

Exon
Length: 151
Transcript: CTSB.fAug05

Exon
Length: 86
Transcript: CTSB.fAug05

Exon
Length: 115
Transcript: CTSB.fAug05

Exon
Length: 119
Transcript: CTSB.fAug05

Exon
Length: 86
Transcript: CTSB.fAug05

Exon
Length: 144
Transcript: CTSB.fAug05

Exon
Length: 117
Transcript: CTSB.fAug05

Exon
Length: 129
Transcript: CTSB.fAug05

Exon
Length: 141
Transcript: CTSB.fAug05

Exon
Length: 188
Transcript: CTSB.fAug05

Intron
Length: 14521
Transcript: CTSB.fAug05

Intron
Length: 633
Transcript: CTSB.fAug05

Intron
Length: 1629
Transcript: CTSB.fAug05

Intron
Length: 1701
Transcript: CTSB.fAug05

Intron
Length: 893
Transcript: CTSB.fAug05

Intron
Length: 244
Transcript: CTSB.fAug05

Intron
Length: 510
Transcript: CTSB.fAug05

Intron
Length: 1262
Transcript: CTSB.fAug05

Intron
Length: 438
Transcript: CTSB.fAug05

Intron
Length: 840
Transcript: CTSB.fAug05

Exon
Length: 118
Transcript: CTSB.gAug05

Exon
Length: 88
Transcript: CTSB.gAug05

Exon
Length: 151
Transcript: CTSB.gAug05

Exon
Length: 86
Transcript: CTSB.gAug05

Exon
Length: 115
Transcript: CTSB.gAug05

Exon
Length: 119
Transcript: CTSB.gAug05

Exon
Length: 86
Transcript: CTSB.gAug05

Exon
Length: 144
Transcript: CTSB.gAug05

Exon
Length: 117
Transcript: CTSB.gAug05

Exon
Length: 129
Transcript: CTSB.gAug05

Exon
Length: 141
Transcript: CTSB.gAug05

Exon
Length: 227
Transcript: CTSB.gAug05

Exon
Length: 158
Transcript: CTSB.gAug05

Intron
Length: 3537
Transcript: CTSB.gAug05

Intron
Length: 10896
Transcript: CTSB.gAug05

Intron
Length: 633
Transcript: CTSB.gAug05

Intron
Length: 1629
Transcript: CTSB.gAug05

Intron
Length: 1701
Transcript: CTSB.gAug05

Intron
Length: 893
Transcript: CTSB.gAug05

Intron
Length: 244
Transcript: CTSB.gAug05

Intron
Length: 510
Transcript: CTSB.gAug05

Intron
Length: 1262
Transcript: CTSB.gAug05

Intron
Length: 438
Transcript: CTSB.gAug05

Intron
Length: 840
Transcript: CTSB.gAug05

Intron
Length: 1330
Transcript: CTSB.gAug05

Exon
Length: 106
Transcript: CTSB.hAug05

Exon
Length: 83
Transcript: CTSB.hAug05

Exon
Length: 151
Transcript: CTSB.hAug05

Exon
Length: 86
Transcript: CTSB.hAug05

Exon
Length: 115
Transcript: CTSB.hAug05

Exon
Length: 119
Transcript: CTSB.hAug05

Exon
Length: 86
Transcript: CTSB.hAug05

Exon
Length: 144
Transcript: CTSB.hAug05

Exon
Length: 117
Transcript: CTSB.hAug05

Exon
Length: 129
Transcript: CTSB.hAug05

Exon
Length: 1208
Transcript: CTSB.hAug05

Exon
Length: 158
Transcript: CTSB.hAug05

Intron
Length: 10060
Transcript: CTSB.hAug05

Intron
Length: 4378
Transcript: CTSB.hAug05

Intron
Length: 633
Transcript: CTSB.hAug05

Intron
Length: 1629
Transcript: CTSB.hAug05

Intron
Length: 1701
Transcript: CTSB.hAug05

Intron
Length: 893
Transcript: CTSB.hAug05

Intron
Length: 244
Transcript: CTSB.hAug05

Intron
Length: 510
Transcript: CTSB.hAug05

Intron
Length: 1262
Transcript: CTSB.hAug05

Intron
Length: 438
Transcript: CTSB.hAug05

Intron
Length: 1330
Transcript: CTSB.hAug05

Exon
Length: 85
Transcript: CTSB.iAug05

Exon
Length: 108
Transcript: CTSB.iAug05

Exon
Length: 151
Transcript: CTSB.iAug05

Exon
Length: 86
Transcript: CTSB.iAug05

Exon
Length: 115
Transcript: CTSB.iAug05

Exon
Length: 119
Transcript: CTSB.iAug05

Exon
Length: 86
Transcript: CTSB.iAug05

Exon
Length: 144
Transcript: CTSB.iAug05

Exon
Length: 117
Transcript: CTSB.iAug05

Exon
Length: 129
Transcript: CTSB.iAug05

Exon
Length: 144
Transcript: CTSB.iAug05

Intron
Length: 3517
Transcript: CTSB.iAug05

Intron
Length: 10896
Transcript: CTSB.iAug05

Intron
Length: 633
Transcript: CTSB.iAug05

Intron
Length: 1629
Transcript: CTSB.iAug05

Intron
Length: 1701
Transcript: CTSB.iAug05

Intron
Length: 893
Transcript: CTSB.iAug05

Intron
Length: 244
Transcript: CTSB.iAug05

Intron
Length: 510
Transcript: CTSB.iAug05

Intron
Length: 1262
Transcript: CTSB.iAug05

Intron
Length: 1419
Transcript: CTSB.iAug05

Exon
Length: 77
Transcript: CTSB.jAug05

Exon
Length: 151
Transcript: CTSB.jAug05

Exon
Length: 86
Transcript: CTSB.jAug05

Exon
Length: 115
Transcript: CTSB.jAug05

Exon
Length: 119
Transcript: CTSB.jAug05

Exon
Length: 86
Transcript: CTSB.jAug05

Exon
Length: 144
Transcript: CTSB.jAug05

Exon
Length: 117
Transcript: CTSB.jAug05

Exon
Length: 226
Transcript: CTSB.jAug05

Intron
Length: 14521
Transcript: CTSB.jAug05

Intron
Length: 633
Transcript: CTSB.jAug05

Intron
Length: 1629
Transcript: CTSB.jAug05

Intron
Length: 1701
Transcript: CTSB.jAug05

Intron
Length: 893
Transcript: CTSB.jAug05

Intron
Length: 244
Transcript: CTSB.jAug05

Intron
Length: 510
Transcript: CTSB.jAug05

Intron
Length: 1262
Transcript: CTSB.jAug05

Exon
Length: 637
Transcript: CTSB.kAug05

Exon
Length: 144
Transcript: CTSB.kAug05

Exon
Length: 117
Transcript: CTSB.kAug05

Exon
Length: 129
Transcript: CTSB.kAug05

Exon
Length: 1203
Transcript: CTSB.kAug05

Exon
Length: 164
Transcript: CTSB.kAug05

Intron
Length: 244
Transcript: CTSB.kAug05

Intron
Length: 510
Transcript: CTSB.kAug05

Intron
Length: 1262
Transcript: CTSB.kAug05

Intron
Length: 438
Transcript: CTSB.kAug05

Intron
Length: 1330
Transcript: CTSB.kAug05

Reaction
Expected peak: 555
Associated peak: 591,594,597,600,603,606,609,610
Repeated 51 time
Molarity: 7.05M
Forward: CTSB.F10
Reverse: CTSB.R7

Exon
Length: 216
Transcript: CTSB.lAug05

Exon
Length: 86
Transcript: CTSB.lAug05

Exon
Length: 144
Transcript: CTSB.lAug05

Exon
Length: 117
Transcript: CTSB.lAug05

Exon
Length: 129
Transcript: CTSB.lAug05

Exon
Length: 84
Transcript: CTSB.lAug05

Exon
Length: 322
Transcript: CTSB.lAug05

Intron
Length: 259
Transcript: CTSB.lAug05

Intron
Length: 244
Transcript: CTSB.lAug05

Intron
Length: 510
Transcript: CTSB.lAug05

Intron
Length: 1262
Transcript: CTSB.lAug05

Intron
Length: 438
Transcript: CTSB.lAug05

Intron
Length: 54
Transcript: CTSB.lAug05

Reaction
Expected peak: 296
Associated peak: 304,305,307,309,310,311,312
Repeated 51 time
Molarity: 10.76M
Forward: CTSB.F10
Reverse: CTSB.R7

Exon
Length: 68
Transcript: CTSB.mAug05

Exon
Length: 88
Transcript: CTSB.mAug05

Exon
Length: 151
Transcript: CTSB.mAug05

Exon
Length: 86
Transcript: CTSB.mAug05

Exon
Length: 115
Transcript: CTSB.mAug05

Exon
Length: 86
Transcript: CTSB.mAug05

Exon
Length: 144
Transcript: CTSB.mAug05

Exon
Length: 117
Transcript: CTSB.mAug05

Exon
Length: 129
Transcript: CTSB.mAug05

Exon
Length: 897
Transcript: CTSB.mAug05

Intron
Length: 3537
Transcript: CTSB.mAug05

Intron
Length: 10896
Transcript: CTSB.mAug05

Intron
Length: 633
Transcript: CTSB.mAug05

Intron
Length: 1629
Transcript: CTSB.mAug05

Intron
Length: 2713
Transcript: CTSB.mAug05

Intron
Length: 244
Transcript: CTSB.mAug05

Intron
Length: 510
Transcript: CTSB.mAug05

Intron
Length: 1262
Transcript: CTSB.mAug05

Intron
Length: 438
Transcript: CTSB.mAug05

Exon
Length: 106
Transcript: CTSB.nAug05

Exon
Length: 151
Transcript: CTSB.nAug05

Exon
Length: 86
Transcript: CTSB.nAug05

Exon
Length: 115
Transcript: CTSB.nAug05

Exon
Length: 119
Transcript: CTSB.nAug05

Exon
Length: 86
Transcript: CTSB.nAug05

Exon
Length: 72
Transcript: CTSB.nAug05

Intron
Length: 14521
Transcript: CTSB.nAug05

Intron
Length: 633
Transcript: CTSB.nAug05

Intron
Length: 1629
Transcript: CTSB.nAug05

Intron
Length: 1701
Transcript: CTSB.nAug05

Intron
Length: 893
Transcript: CTSB.nAug05

Intron
Length: 315
Transcript: CTSB.nAug05

Exon
Length: 89
Transcript: CTSB.oAug05

Exon
Length: 151
Transcript: CTSB.oAug05

Exon
Length: 86
Transcript: CTSB.oAug05

Exon
Length: 115
Transcript: CTSB.oAug05

Exon
Length: 119
Transcript: CTSB.oAug05

Exon
Length: 64
Transcript: CTSB.oAug05

Intron
Length: 13774
Transcript: CTSB.oAug05

Intron
Length: 633
Transcript: CTSB.oAug05

Intron
Length: 1629
Transcript: CTSB.oAug05

Intron
Length: 1701
Transcript: CTSB.oAug05

Intron
Length: 893
Transcript: CTSB.oAug05

Exon
Length: 98
Transcript: CTSB.pAug05

Exon
Length: 86
Transcript: CTSB.pAug05

Exon
Length: 117
Transcript: CTSB.pAug05

Exon
Length: 129
Transcript: CTSB.pAug05

Exon
Length: 141
Transcript: CTSB.pAug05

Intron
Length: 259
Transcript: CTSB.pAug05

Intron
Length: 898
Transcript: CTSB.pAug05

Intron
Length: 1262
Transcript: CTSB.pAug05

Intron
Length: 438
Transcript: CTSB.pAug05

Exon
Length: 91
Transcript: CTSB.qAug05

Exon
Length: 108
Transcript: CTSB.qAug05

Exon
Length: 134
Transcript: CTSB.qAug05

Exon
Length: 74
Transcript: CTSB.qAug05

Exon
Length: 151
Transcript: CTSB.qAug05

Exon
Length: 86
Transcript: CTSB.qAug05

Exon
Length: 105
Transcript: CTSB.qAug05

Intron
Length: 3517
Transcript: CTSB.qAug05

Intron
Length: 1897
Transcript: CTSB.qAug05

Intron
Length: 865
Transcript: CTSB.qAug05

Intron
Length: 7926
Transcript: CTSB.qAug05

Intron
Length: 633
Transcript: CTSB.qAug05

Intron
Length: 1629
Transcript: CTSB.qAug05

Reaction
Expected peak: 176
Associated peak: 192,193,194,195
Repeated 51 time
Molarity: 23.46M
Forward: CTSB.F6
Reverse: CTSB.R2

Reaction
Expected peak: 349
Associated peak: 347,351,352,377,378,379
Repeated 51 time
Molarity: 0.12M
Forward: CTSB.F2
Reverse: CTSB.R6

Reaction
Expected peak: 799
Associated peak: 819,830,833,841,844,849,851,856,860,862,867,878
Repeated 51 time
Molarity: 2.25M
Forward: CTSB.F10
Reverse: CTSB.R7

Exon
Length: 803
Transcript: CTSB.rAug05

Exon
Length: 88
Transcript: CTSB.rAug05

Exon
Length: 151
Transcript: CTSB.rAug05

Exon
Length: 40
Transcript: CTSB.rAug05

Intron
Length: 2790
Transcript: CTSB.rAug05

Intron
Length: 10896
Transcript: CTSB.rAug05

Intron
Length: 633
Transcript: CTSB.rAug05

Exon
Length: 9140
Transcript: CTSB.shed1.aAug05

Reaction
Expected peak: 799
Associated peak: 819,830,833,841,844,849,851,856,860,862,867,878
Repeated 51 time
Molarity: 2.25M
Forward: CTSB.F10
Reverse: CTSB.R7

Exon
Length: 600
Transcript: CTSB.shed2.aAug05

Exon
Length: 1108
Transcript: CTSB.shed3.aAug05

Exon
Length: 254
Transcript: CTSB.shed4.aAug05

Exon
Length: 45
Transcript: CTSB.shed4.aAug05

Intron
Length: 1001
Transcript: CTSB.shed4.aAug05

Reaction
Expected peak: 799
Associated peak: 819,830,833,841,844,849,851,856,860,862,867,878
Repeated 51 time
Molarity: 2.25M
Forward: CTSB.F10
Reverse: CTSB.R7

Exon
Length: 442
Transcript: CTSB.shed5.aAug05

Exon
Length: 825
Transcript: CTSB.tAug05

Reaction
Expected peak: 799
Associated peak: 819,830,833,841,844,849,851,856,860,862,867,878
Repeated 51 time
Molarity: 2.25M
Forward: CTSB.F10
Reverse: CTSB.R7

CTSB.R2
ACAGGGGATGGAAAGAGGG

CTSB.R6
TGCCAATCATCTATGCAAACC

CTSB.F6
GTCTTCAGGCCTATGGAGAGC

CTSB.R7
GCTTGTCCTGTTTGTAGGTCG

CTSB.F2
AGGCTGGGCTGCAGGCTCTC

CTSB.F10
CTTAGGGAAGTTTAGCGTCTGC

Gene primer pair list : Primer pairs

Forward	Reverse	Occurences	View
CTSB.F10	CTSB.R7	51	View
CTSB.F2	CTSB.R6	51	View
CTSB.F6	CTSB.R2	51	View

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