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Public data
LGFUS Public Data
Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Gene primer pair list
: Primer pairs
Transcript map
: SYK
Exon
Length: 106
Transcript: SYK.aAug05
Length: 106
Transcript: SYK.aAug05
Exon
Length: 458
Transcript: SYK.aAug05
Length: 458
Transcript: SYK.aAug05
Exon
Length: 161
Transcript: SYK.aAug05
Length: 161
Transcript: SYK.aAug05
Exon
Length: 139
Transcript: SYK.aAug05
Length: 139
Transcript: SYK.aAug05
Exon
Length: 79
Transcript: SYK.aAug05
Length: 79
Transcript: SYK.aAug05
Exon
Length: 50
Transcript: SYK.aAug05
Length: 50
Transcript: SYK.aAug05
Exon
Length: 69
Transcript: SYK.aAug05
Length: 69
Transcript: SYK.aAug05
Exon
Length: 88
Transcript: SYK.aAug05
Length: 88
Transcript: SYK.aAug05
Exon
Length: 178
Transcript: SYK.aAug05
Length: 178
Transcript: SYK.aAug05
Exon
Length: 210
Transcript: SYK.aAug05
Length: 210
Transcript: SYK.aAug05
Exon
Length: 190
Transcript: SYK.aAug05
Length: 190
Transcript: SYK.aAug05
Exon
Length: 141
Transcript: SYK.aAug05
Length: 141
Transcript: SYK.aAug05
Exon
Length: 113
Transcript: SYK.aAug05
Length: 113
Transcript: SYK.aAug05
Exon
Length: 672
Transcript: SYK.aAug05
Length: 672
Transcript: SYK.aAug05
Intron
Length: 41964
Transcript: SYK.aAug05
Length: 41964
Transcript: SYK.aAug05
Intron
Length: 1118
Transcript: SYK.aAug05
Length: 1118
Transcript: SYK.aAug05
Intron
Length: 16611
Transcript: SYK.aAug05
Length: 16611
Transcript: SYK.aAug05
Intron
Length: 2244
Transcript: SYK.aAug05
Length: 2244
Transcript: SYK.aAug05
Intron
Length: 380
Transcript: SYK.aAug05
Length: 380
Transcript: SYK.aAug05
Intron
Length: 2033
Transcript: SYK.aAug05
Length: 2033
Transcript: SYK.aAug05
Intron
Length: 7004
Transcript: SYK.aAug05
Length: 7004
Transcript: SYK.aAug05
Intron
Length: 380
Transcript: SYK.aAug05
Length: 380
Transcript: SYK.aAug05
Intron
Length: 2721
Transcript: SYK.aAug05
Length: 2721
Transcript: SYK.aAug05
Intron
Length: 983
Transcript: SYK.aAug05
Length: 983
Transcript: SYK.aAug05
Intron
Length: 8795
Transcript: SYK.aAug05
Length: 8795
Transcript: SYK.aAug05
Intron
Length: 625
Transcript: SYK.aAug05
Length: 625
Transcript: SYK.aAug05
Intron
Length: 6900
Transcript: SYK.aAug05
Length: 6900
Transcript: SYK.aAug05
Reaction
Expected peak: 313
Associated peak: 322,323,324,325,326,327,328,329,330,333,337
Repeated 51 time
Molarity: 46.90M
Forward: SYK.F1
Reverse: SYK.R16
Expected peak: 313
Associated peak: 322,323,324,325,326,327,328,329,330,333,337
Repeated 51 time
Molarity: 46.90M
Forward: SYK.F1
Reverse: SYK.R16
Exon
Length: 160
Transcript: SYK.bAug05
Length: 160
Transcript: SYK.bAug05
Exon
Length: 458
Transcript: SYK.bAug05
Length: 458
Transcript: SYK.bAug05
Exon
Length: 161
Transcript: SYK.bAug05
Length: 161
Transcript: SYK.bAug05
Exon
Length: 139
Transcript: SYK.bAug05
Length: 139
Transcript: SYK.bAug05
Exon
Length: 79
Transcript: SYK.bAug05
Length: 79
Transcript: SYK.bAug05
Exon
Length: 50
Transcript: SYK.bAug05
Length: 50
Transcript: SYK.bAug05
Exon
Length: 69
Transcript: SYK.bAug05
Length: 69
Transcript: SYK.bAug05
Exon
Length: 88
Transcript: SYK.bAug05
Length: 88
Transcript: SYK.bAug05
Exon
Length: 178
Transcript: SYK.bAug05
Length: 178
Transcript: SYK.bAug05
Exon
Length: 210
Transcript: SYK.bAug05
Length: 210
Transcript: SYK.bAug05
Exon
Length: 190
Transcript: SYK.bAug05
Length: 190
Transcript: SYK.bAug05
Exon
Length: 141
Transcript: SYK.bAug05
Length: 141
Transcript: SYK.bAug05
Exon
Length: 113
Transcript: SYK.bAug05
Length: 113
Transcript: SYK.bAug05
Exon
Length: 3033
Transcript: SYK.bAug05
Length: 3033
Transcript: SYK.bAug05
Intron
Length: 16278
Transcript: SYK.bAug05
Length: 16278
Transcript: SYK.bAug05
Intron
Length: 1118
Transcript: SYK.bAug05
Length: 1118
Transcript: SYK.bAug05
Intron
Length: 16611
Transcript: SYK.bAug05
Length: 16611
Transcript: SYK.bAug05
Intron
Length: 2244
Transcript: SYK.bAug05
Length: 2244
Transcript: SYK.bAug05
Intron
Length: 380
Transcript: SYK.bAug05
Length: 380
Transcript: SYK.bAug05
Intron
Length: 2033
Transcript: SYK.bAug05
Length: 2033
Transcript: SYK.bAug05
Intron
Length: 7004
Transcript: SYK.bAug05
Length: 7004
Transcript: SYK.bAug05
Intron
Length: 380
Transcript: SYK.bAug05
Length: 380
Transcript: SYK.bAug05
Intron
Length: 2721
Transcript: SYK.bAug05
Length: 2721
Transcript: SYK.bAug05
Intron
Length: 983
Transcript: SYK.bAug05
Length: 983
Transcript: SYK.bAug05
Intron
Length: 8795
Transcript: SYK.bAug05
Length: 8795
Transcript: SYK.bAug05
Intron
Length: 625
Transcript: SYK.bAug05
Length: 625
Transcript: SYK.bAug05
Intron
Length: 6900
Transcript: SYK.bAug05
Length: 6900
Transcript: SYK.bAug05
Reaction
Expected peak: 313
Associated peak: 322,323,324,325,326,327,328,329,330,333,337
Repeated 51 time
Molarity: 46.90M
Forward: SYK.F1
Reverse: SYK.R16
Expected peak: 313
Associated peak: 322,323,324,325,326,327,328,329,330,333,337
Repeated 51 time
Molarity: 46.90M
Forward: SYK.F1
Reverse: SYK.R16
Exon
Length: 107
Transcript: SYK.cAug05
Length: 107
Transcript: SYK.cAug05
Exon
Length: 458
Transcript: SYK.cAug05
Length: 458
Transcript: SYK.cAug05
Exon
Length: 161
Transcript: SYK.cAug05
Length: 161
Transcript: SYK.cAug05
Exon
Length: 139
Transcript: SYK.cAug05
Length: 139
Transcript: SYK.cAug05
Exon
Length: 79
Transcript: SYK.cAug05
Length: 79
Transcript: SYK.cAug05
Exon
Length: 50
Transcript: SYK.cAug05
Length: 50
Transcript: SYK.cAug05
Exon
Length: 88
Transcript: SYK.cAug05
Length: 88
Transcript: SYK.cAug05
Exon
Length: 178
Transcript: SYK.cAug05
Length: 178
Transcript: SYK.cAug05
Exon
Length: 210
Transcript: SYK.cAug05
Length: 210
Transcript: SYK.cAug05
Exon
Length: 190
Transcript: SYK.cAug05
Length: 190
Transcript: SYK.cAug05
Exon
Length: 141
Transcript: SYK.cAug05
Length: 141
Transcript: SYK.cAug05
Exon
Length: 113
Transcript: SYK.cAug05
Length: 113
Transcript: SYK.cAug05
Exon
Length: 616
Transcript: SYK.cAug05
Length: 616
Transcript: SYK.cAug05
Intron
Length: 41964
Transcript: SYK.cAug05
Length: 41964
Transcript: SYK.cAug05
Intron
Length: 1118
Transcript: SYK.cAug05
Length: 1118
Transcript: SYK.cAug05
Intron
Length: 16611
Transcript: SYK.cAug05
Length: 16611
Transcript: SYK.cAug05
Intron
Length: 2244
Transcript: SYK.cAug05
Length: 2244
Transcript: SYK.cAug05
Intron
Length: 380
Transcript: SYK.cAug05
Length: 380
Transcript: SYK.cAug05
Intron
Length: 9106
Transcript: SYK.cAug05
Length: 9106
Transcript: SYK.cAug05
Intron
Length: 380
Transcript: SYK.cAug05
Length: 380
Transcript: SYK.cAug05
Intron
Length: 2721
Transcript: SYK.cAug05
Length: 2721
Transcript: SYK.cAug05
Intron
Length: 983
Transcript: SYK.cAug05
Length: 983
Transcript: SYK.cAug05
Intron
Length: 8795
Transcript: SYK.cAug05
Length: 8795
Transcript: SYK.cAug05
Intron
Length: 625
Transcript: SYK.cAug05
Length: 625
Transcript: SYK.cAug05
Intron
Length: 6900
Transcript: SYK.cAug05
Length: 6900
Transcript: SYK.cAug05
Reaction
Expected peak: 244
Associated peak: 257,258,259,260,261,270,271
Repeated 51 time
Molarity: 7.28M
Forward: SYK.F1
Reverse: SYK.R16
Expected peak: 244
Associated peak: 257,258,259,260,261,270,271
Repeated 51 time
Molarity: 7.28M
Forward: SYK.F1
Reverse: SYK.R16
Exon
Length: 79
Transcript: SYK.dAug05
Length: 79
Transcript: SYK.dAug05
Exon
Length: 458
Transcript: SYK.dAug05
Length: 458
Transcript: SYK.dAug05
Exon
Length: 161
Transcript: SYK.dAug05
Length: 161
Transcript: SYK.dAug05
Exon
Length: 139
Transcript: SYK.dAug05
Length: 139
Transcript: SYK.dAug05
Exon
Length: 79
Transcript: SYK.dAug05
Length: 79
Transcript: SYK.dAug05
Exon
Length: 50
Transcript: SYK.dAug05
Length: 50
Transcript: SYK.dAug05
Exon
Length: 88
Transcript: SYK.dAug05
Length: 88
Transcript: SYK.dAug05
Exon
Length: 178
Transcript: SYK.dAug05
Length: 178
Transcript: SYK.dAug05
Exon
Length: 210
Transcript: SYK.dAug05
Length: 210
Transcript: SYK.dAug05
Exon
Length: 190
Transcript: SYK.dAug05
Length: 190
Transcript: SYK.dAug05
Exon
Length: 141
Transcript: SYK.dAug05
Length: 141
Transcript: SYK.dAug05
Exon
Length: 113
Transcript: SYK.dAug05
Length: 113
Transcript: SYK.dAug05
Exon
Length: 672
Transcript: SYK.dAug05
Length: 672
Transcript: SYK.dAug05
Intron
Length: 41852
Transcript: SYK.dAug05
Length: 41852
Transcript: SYK.dAug05
Intron
Length: 1118
Transcript: SYK.dAug05
Length: 1118
Transcript: SYK.dAug05
Intron
Length: 16611
Transcript: SYK.dAug05
Length: 16611
Transcript: SYK.dAug05
Intron
Length: 2244
Transcript: SYK.dAug05
Length: 2244
Transcript: SYK.dAug05
Intron
Length: 380
Transcript: SYK.dAug05
Length: 380
Transcript: SYK.dAug05
Intron
Length: 9106
Transcript: SYK.dAug05
Length: 9106
Transcript: SYK.dAug05
Intron
Length: 380
Transcript: SYK.dAug05
Length: 380
Transcript: SYK.dAug05
Intron
Length: 2721
Transcript: SYK.dAug05
Length: 2721
Transcript: SYK.dAug05
Intron
Length: 983
Transcript: SYK.dAug05
Length: 983
Transcript: SYK.dAug05
Intron
Length: 8795
Transcript: SYK.dAug05
Length: 8795
Transcript: SYK.dAug05
Intron
Length: 625
Transcript: SYK.dAug05
Length: 625
Transcript: SYK.dAug05
Intron
Length: 6900
Transcript: SYK.dAug05
Length: 6900
Transcript: SYK.dAug05
Reaction
Expected peak: 244
Associated peak: 257,258,259,260,261,270,271
Repeated 51 time
Molarity: 7.28M
Forward: SYK.F1
Reverse: SYK.R16
Expected peak: 244
Associated peak: 257,258,259,260,261,270,271
Repeated 51 time
Molarity: 7.28M
Forward: SYK.F1
Reverse: SYK.R16
Exon
Length: 90
Transcript: SYK.eAug05
Length: 90
Transcript: SYK.eAug05
Exon
Length: 458
Transcript: SYK.eAug05
Length: 458
Transcript: SYK.eAug05
Exon
Length: 161
Transcript: SYK.eAug05
Length: 161
Transcript: SYK.eAug05
Exon
Length: 139
Transcript: SYK.eAug05
Length: 139
Transcript: SYK.eAug05
Exon
Length: 79
Transcript: SYK.eAug05
Length: 79
Transcript: SYK.eAug05
Exon
Length: 50
Transcript: SYK.eAug05
Length: 50
Transcript: SYK.eAug05
Exon
Length: 69
Transcript: SYK.eAug05
Length: 69
Transcript: SYK.eAug05
Exon
Length: 88
Transcript: SYK.eAug05
Length: 88
Transcript: SYK.eAug05
Exon
Length: 178
Transcript: SYK.eAug05
Length: 178
Transcript: SYK.eAug05
Exon
Length: 751
Transcript: SYK.eAug05
Length: 751
Transcript: SYK.eAug05
Intron
Length: 41818
Transcript: SYK.eAug05
Length: 41818
Transcript: SYK.eAug05
Intron
Length: 1118
Transcript: SYK.eAug05
Length: 1118
Transcript: SYK.eAug05
Intron
Length: 16611
Transcript: SYK.eAug05
Length: 16611
Transcript: SYK.eAug05
Intron
Length: 2244
Transcript: SYK.eAug05
Length: 2244
Transcript: SYK.eAug05
Intron
Length: 380
Transcript: SYK.eAug05
Length: 380
Transcript: SYK.eAug05
Intron
Length: 2033
Transcript: SYK.eAug05
Length: 2033
Transcript: SYK.eAug05
Intron
Length: 7004
Transcript: SYK.eAug05
Length: 7004
Transcript: SYK.eAug05
Intron
Length: 380
Transcript: SYK.eAug05
Length: 380
Transcript: SYK.eAug05
Intron
Length: 2721
Transcript: SYK.eAug05
Length: 2721
Transcript: SYK.eAug05
Reaction
Expected peak: 313
Associated peak: 322,323,324,325,326,327,328,329,330,333,337
Repeated 51 time
Molarity: 46.90M
Forward: SYK.F1
Reverse: SYK.R16
Expected peak: 313
Associated peak: 322,323,324,325,326,327,328,329,330,333,337
Repeated 51 time
Molarity: 46.90M
Forward: SYK.F1
Reverse: SYK.R16
Exon
Length: 118
Transcript: SYK.fAug05
Length: 118
Transcript: SYK.fAug05
Exon
Length: 458
Transcript: SYK.fAug05
Length: 458
Transcript: SYK.fAug05
Exon
Length: 161
Transcript: SYK.fAug05
Length: 161
Transcript: SYK.fAug05
Exon
Length: 139
Transcript: SYK.fAug05
Length: 139
Transcript: SYK.fAug05
Exon
Length: 79
Transcript: SYK.fAug05
Length: 79
Transcript: SYK.fAug05
Exon
Length: 50
Transcript: SYK.fAug05
Length: 50
Transcript: SYK.fAug05
Exon
Length: 714
Transcript: SYK.fAug05
Length: 714
Transcript: SYK.fAug05
Intron
Length: 41964
Transcript: SYK.fAug05
Length: 41964
Transcript: SYK.fAug05
Intron
Length: 1118
Transcript: SYK.fAug05
Length: 1118
Transcript: SYK.fAug05
Intron
Length: 16611
Transcript: SYK.fAug05
Length: 16611
Transcript: SYK.fAug05
Intron
Length: 2244
Transcript: SYK.fAug05
Length: 2244
Transcript: SYK.fAug05
Intron
Length: 380
Transcript: SYK.fAug05
Length: 380
Transcript: SYK.fAug05
Intron
Length: 2033
Transcript: SYK.fAug05
Length: 2033
Transcript: SYK.fAug05
Exon
Length: 76
Transcript: SYK.gAug05
Length: 76
Transcript: SYK.gAug05
Exon
Length: 458
Transcript: SYK.gAug05
Length: 458
Transcript: SYK.gAug05
Exon
Length: 1266
Transcript: SYK.gAug05
Length: 1266
Transcript: SYK.gAug05
Intron
Length: 42152
Transcript: SYK.gAug05
Length: 42152
Transcript: SYK.gAug05
Intron
Length: 1118
Transcript: SYK.gAug05
Length: 1118
Transcript: SYK.gAug05
Exon
Length: 69
Transcript: SYK.iAug05
Length: 69
Transcript: SYK.iAug05
Exon
Length: 88
Transcript: SYK.iAug05
Length: 88
Transcript: SYK.iAug05
Exon
Length: 178
Transcript: SYK.iAug05
Length: 178
Transcript: SYK.iAug05
Exon
Length: 210
Transcript: SYK.iAug05
Length: 210
Transcript: SYK.iAug05
Exon
Length: 109
Transcript: SYK.iAug05
Length: 109
Transcript: SYK.iAug05
Intron
Length: 7004
Transcript: SYK.iAug05
Length: 7004
Transcript: SYK.iAug05
Intron
Length: 380
Transcript: SYK.iAug05
Length: 380
Transcript: SYK.iAug05
Intron
Length: 2721
Transcript: SYK.iAug05
Length: 2721
Transcript: SYK.iAug05
Intron
Length: 246
Transcript: SYK.iAug05
Length: 246
Transcript: SYK.iAug05
Exon
Length: 2521
Transcript: SYK.jAug05
Length: 2521
Transcript: SYK.jAug05
Exon
Length: 178
Transcript: SYK.jAug05
Length: 178
Transcript: SYK.jAug05
Exon
Length: 1383
Transcript: SYK.jAug05
Length: 1383
Transcript: SYK.jAug05
Exon
Length: 141
Transcript: SYK.jAug05
Length: 141
Transcript: SYK.jAug05
Exon
Length: 113
Transcript: SYK.jAug05
Length: 113
Transcript: SYK.jAug05
Exon
Length: 616
Transcript: SYK.jAug05
Length: 616
Transcript: SYK.jAug05
Intron
Length: 380
Transcript: SYK.jAug05
Length: 380
Transcript: SYK.jAug05
Intron
Length: 2721
Transcript: SYK.jAug05
Length: 2721
Transcript: SYK.jAug05
Intron
Length: 8795
Transcript: SYK.jAug05
Length: 8795
Transcript: SYK.jAug05
Intron
Length: 625
Transcript: SYK.jAug05
Length: 625
Transcript: SYK.jAug05
Intron
Length: 6900
Transcript: SYK.jAug05
Length: 6900
Transcript: SYK.jAug05
Exon
Length: 97
Transcript: SYK.kAug05
Length: 97
Transcript: SYK.kAug05
Exon
Length: 976
Transcript: SYK.kAug05
Length: 976
Transcript: SYK.kAug05
Intron
Length: 41818
Transcript: SYK.kAug05
Length: 41818
Transcript: SYK.kAug05
Exon
Length: 223
Transcript: SYK.lAug05
Length: 223
Transcript: SYK.lAug05
Exon
Length: 15
Transcript: SYK.lAug05
Length: 15
Transcript: SYK.lAug05
Intron
Length: 625
Transcript: SYK.lAug05
Length: 625
Transcript: SYK.lAug05
Exon
Length: 3625
Transcript: SYK.shed1.aAug05
Length: 3625
Transcript: SYK.shed1.aAug05
Exon
Length: 173
Transcript: SYK.shed2.aAug05
Length: 173
Transcript: SYK.shed2.aAug05
Exon
Length: 1007
Transcript: SYK.shed3.aAug05
Length: 1007
Transcript: SYK.shed3.aAug05
Exon
Length: 940
Transcript: SYK.shed4.aAug05
Length: 940
Transcript: SYK.shed4.aAug05
Exon
Length: 221
Transcript: SYK.shed5.aAug05
Length: 221
Transcript: SYK.shed5.aAug05
Exon
Length: 472
Transcript: SYK.shed6.aAug05
Length: 472
Transcript: SYK.shed6.aAug05
Exon
Length: 639
Transcript: SYK.shed7.aAug05
Length: 639
Transcript: SYK.shed7.aAug05
SYK.F1
CACAACTTCCAGGTTCCCAT
CACAACTTCCAGGTTCCCAT
SYK.R16
CCCAGTTCTTTGTCTTCCAGC
CCCAGTTCTTTGTCTTCCAGC