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Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: IGSF4
Exon
Length: 145
Transcript: IGSF4.aAug05
Length: 145
Transcript: IGSF4.aAug05
Exon
Length: 147
Transcript: IGSF4.aAug05
Length: 147
Transcript: IGSF4.aAug05
Exon
Length: 153
Transcript: IGSF4.aAug05
Length: 153
Transcript: IGSF4.aAug05
Exon
Length: 138
Transcript: IGSF4.aAug05
Length: 138
Transcript: IGSF4.aAug05
Exon
Length: 159
Transcript: IGSF4.aAug05
Length: 159
Transcript: IGSF4.aAug05
Exon
Length: 100
Transcript: IGSF4.aAug05
Length: 100
Transcript: IGSF4.aAug05
Exon
Length: 173
Transcript: IGSF4.aAug05
Length: 173
Transcript: IGSF4.aAug05
Exon
Length: 84
Transcript: IGSF4.aAug05
Length: 84
Transcript: IGSF4.aAug05
Exon
Length: 132
Transcript: IGSF4.aAug05
Length: 132
Transcript: IGSF4.aAug05
Exon
Length: 2968
Transcript: IGSF4.aAug05
Length: 2968
Transcript: IGSF4.aAug05
Intron
Length: 263848
Transcript: IGSF4.aAug05
Length: 263848
Transcript: IGSF4.aAug05
Intron
Length: 1621
Transcript: IGSF4.aAug05
Length: 1621
Transcript: IGSF4.aAug05
Intron
Length: 7009
Transcript: IGSF4.aAug05
Length: 7009
Transcript: IGSF4.aAug05
Intron
Length: 2081
Transcript: IGSF4.aAug05
Length: 2081
Transcript: IGSF4.aAug05
Intron
Length: 11121
Transcript: IGSF4.aAug05
Length: 11121
Transcript: IGSF4.aAug05
Intron
Length: 3111
Transcript: IGSF4.aAug05
Length: 3111
Transcript: IGSF4.aAug05
Intron
Length: 4950
Transcript: IGSF4.aAug05
Length: 4950
Transcript: IGSF4.aAug05
Intron
Length: 30798
Transcript: IGSF4.aAug05
Length: 30798
Transcript: IGSF4.aAug05
Intron
Length: 2051
Transcript: IGSF4.aAug05
Length: 2051
Transcript: IGSF4.aAug05
Reaction
Expected peak: 132
Associated peak: 141,142,143,144,146,147,148,149,150,151
Repeated 51 time
Molarity: 56.40M
Forward: IGSF4.F6
Reverse: IGSF4.R1
Expected peak: 132
Associated peak: 141,142,143,144,146,147,148,149,150,151
Repeated 51 time
Molarity: 56.40M
Forward: IGSF4.F6
Reverse: IGSF4.R1
Exon
Length: 143
Transcript: IGSF4.bAug05
Length: 143
Transcript: IGSF4.bAug05
Exon
Length: 147
Transcript: IGSF4.bAug05
Length: 147
Transcript: IGSF4.bAug05
Exon
Length: 153
Transcript: IGSF4.bAug05
Length: 153
Transcript: IGSF4.bAug05
Exon
Length: 138
Transcript: IGSF4.bAug05
Length: 138
Transcript: IGSF4.bAug05
Exon
Length: 159
Transcript: IGSF4.bAug05
Length: 159
Transcript: IGSF4.bAug05
Exon
Length: 100
Transcript: IGSF4.bAug05
Length: 100
Transcript: IGSF4.bAug05
Exon
Length: 173
Transcript: IGSF4.bAug05
Length: 173
Transcript: IGSF4.bAug05
Exon
Length: 33
Transcript: IGSF4.bAug05
Length: 33
Transcript: IGSF4.bAug05
Exon
Length: 54
Transcript: IGSF4.bAug05
Length: 54
Transcript: IGSF4.bAug05
Exon
Length: 132
Transcript: IGSF4.bAug05
Length: 132
Transcript: IGSF4.bAug05
Exon
Length: 556
Transcript: IGSF4.bAug05
Length: 556
Transcript: IGSF4.bAug05
Intron
Length: 263848
Transcript: IGSF4.bAug05
Length: 263848
Transcript: IGSF4.bAug05
Intron
Length: 1621
Transcript: IGSF4.bAug05
Length: 1621
Transcript: IGSF4.bAug05
Intron
Length: 7009
Transcript: IGSF4.bAug05
Length: 7009
Transcript: IGSF4.bAug05
Intron
Length: 2081
Transcript: IGSF4.bAug05
Length: 2081
Transcript: IGSF4.bAug05
Intron
Length: 11121
Transcript: IGSF4.bAug05
Length: 11121
Transcript: IGSF4.bAug05
Intron
Length: 3111
Transcript: IGSF4.bAug05
Length: 3111
Transcript: IGSF4.bAug05
Intron
Length: 16169
Transcript: IGSF4.bAug05
Length: 16169
Transcript: IGSF4.bAug05
Intron
Length: 7464
Transcript: IGSF4.bAug05
Length: 7464
Transcript: IGSF4.bAug05
Intron
Length: 12112
Transcript: IGSF4.bAug05
Length: 12112
Transcript: IGSF4.bAug05
Intron
Length: 2051
Transcript: IGSF4.bAug05
Length: 2051
Transcript: IGSF4.bAug05
Exon
Length: 75
Transcript: IGSF4.cAug05
Length: 75
Transcript: IGSF4.cAug05
Exon
Length: 147
Transcript: IGSF4.cAug05
Length: 147
Transcript: IGSF4.cAug05
Exon
Length: 153
Transcript: IGSF4.cAug05
Length: 153
Transcript: IGSF4.cAug05
Exon
Length: 138
Transcript: IGSF4.cAug05
Length: 138
Transcript: IGSF4.cAug05
Exon
Length: 159
Transcript: IGSF4.cAug05
Length: 159
Transcript: IGSF4.cAug05
Exon
Length: 100
Transcript: IGSF4.cAug05
Length: 100
Transcript: IGSF4.cAug05
Exon
Length: 173
Transcript: IGSF4.cAug05
Length: 173
Transcript: IGSF4.cAug05
Exon
Length: 84
Transcript: IGSF4.cAug05
Length: 84
Transcript: IGSF4.cAug05
Exon
Length: 33
Transcript: IGSF4.cAug05
Length: 33
Transcript: IGSF4.cAug05
Exon
Length: 132
Transcript: IGSF4.cAug05
Length: 132
Transcript: IGSF4.cAug05
Exon
Length: 555
Transcript: IGSF4.cAug05
Length: 555
Transcript: IGSF4.cAug05
Intron
Length: 46982
Transcript: IGSF4.cAug05
Length: 46982
Transcript: IGSF4.cAug05
Intron
Length: 1621
Transcript: IGSF4.cAug05
Length: 1621
Transcript: IGSF4.cAug05
Intron
Length: 7009
Transcript: IGSF4.cAug05
Length: 7009
Transcript: IGSF4.cAug05
Intron
Length: 2081
Transcript: IGSF4.cAug05
Length: 2081
Transcript: IGSF4.cAug05
Intron
Length: 11121
Transcript: IGSF4.cAug05
Length: 11121
Transcript: IGSF4.cAug05
Intron
Length: 3111
Transcript: IGSF4.cAug05
Length: 3111
Transcript: IGSF4.cAug05
Intron
Length: 4950
Transcript: IGSF4.cAug05
Length: 4950
Transcript: IGSF4.cAug05
Intron
Length: 11135
Transcript: IGSF4.cAug05
Length: 11135
Transcript: IGSF4.cAug05
Intron
Length: 19630
Transcript: IGSF4.cAug05
Length: 19630
Transcript: IGSF4.cAug05
Intron
Length: 2051
Transcript: IGSF4.cAug05
Length: 2051
Transcript: IGSF4.cAug05
Reaction
Expected peak: 165
Associated peak: 176,177,178,179,182,183,184,185,186
Repeated 51 time
Molarity: 10.29M
Forward: IGSF4.F6
Reverse: IGSF4.R1
Expected peak: 165
Associated peak: 176,177,178,179,182,183,184,185,186
Repeated 51 time
Molarity: 10.29M
Forward: IGSF4.F6
Reverse: IGSF4.R1
Exon
Length: 253
Transcript: IGSF4.dAug05
Length: 253
Transcript: IGSF4.dAug05
Exon
Length: 147
Transcript: IGSF4.dAug05
Length: 147
Transcript: IGSF4.dAug05
Exon
Length: 153
Transcript: IGSF4.dAug05
Length: 153
Transcript: IGSF4.dAug05
Exon
Length: 138
Transcript: IGSF4.dAug05
Length: 138
Transcript: IGSF4.dAug05
Exon
Length: 159
Transcript: IGSF4.dAug05
Length: 159
Transcript: IGSF4.dAug05
Exon
Length: 100
Transcript: IGSF4.dAug05
Length: 100
Transcript: IGSF4.dAug05
Exon
Length: 173
Transcript: IGSF4.dAug05
Length: 173
Transcript: IGSF4.dAug05
Exon
Length: 132
Transcript: IGSF4.dAug05
Length: 132
Transcript: IGSF4.dAug05
Exon
Length: 391
Transcript: IGSF4.dAug05
Length: 391
Transcript: IGSF4.dAug05
Intron
Length: 263848
Transcript: IGSF4.dAug05
Length: 263848
Transcript: IGSF4.dAug05
Intron
Length: 1621
Transcript: IGSF4.dAug05
Length: 1621
Transcript: IGSF4.dAug05
Intron
Length: 7009
Transcript: IGSF4.dAug05
Length: 7009
Transcript: IGSF4.dAug05
Intron
Length: 2081
Transcript: IGSF4.dAug05
Length: 2081
Transcript: IGSF4.dAug05
Intron
Length: 11121
Transcript: IGSF4.dAug05
Length: 11121
Transcript: IGSF4.dAug05
Intron
Length: 3111
Transcript: IGSF4.dAug05
Length: 3111
Transcript: IGSF4.dAug05
Intron
Length: 35832
Transcript: IGSF4.dAug05
Length: 35832
Transcript: IGSF4.dAug05
Intron
Length: 9017
Transcript: IGSF4.dAug05
Length: 9017
Transcript: IGSF4.dAug05
Exon
Length: 308
Transcript: IGSF4.eAug05
Length: 308
Transcript: IGSF4.eAug05
Exon
Length: 147
Transcript: IGSF4.eAug05
Length: 147
Transcript: IGSF4.eAug05
Exon
Length: 153
Transcript: IGSF4.eAug05
Length: 153
Transcript: IGSF4.eAug05
Exon
Length: 138
Transcript: IGSF4.eAug05
Length: 138
Transcript: IGSF4.eAug05
Exon
Length: 159
Transcript: IGSF4.eAug05
Length: 159
Transcript: IGSF4.eAug05
Exon
Length: 100
Transcript: IGSF4.eAug05
Length: 100
Transcript: IGSF4.eAug05
Exon
Length: 291
Transcript: IGSF4.eAug05
Length: 291
Transcript: IGSF4.eAug05
Intron
Length: 263848
Transcript: IGSF4.eAug05
Length: 263848
Transcript: IGSF4.eAug05
Intron
Length: 1621
Transcript: IGSF4.eAug05
Length: 1621
Transcript: IGSF4.eAug05
Intron
Length: 7009
Transcript: IGSF4.eAug05
Length: 7009
Transcript: IGSF4.eAug05
Intron
Length: 2081
Transcript: IGSF4.eAug05
Length: 2081
Transcript: IGSF4.eAug05
Intron
Length: 11121
Transcript: IGSF4.eAug05
Length: 11121
Transcript: IGSF4.eAug05
Intron
Length: 3111
Transcript: IGSF4.eAug05
Length: 3111
Transcript: IGSF4.eAug05
Exon
Length: 133
Transcript: IGSF4.fAug05
Length: 133
Transcript: IGSF4.fAug05
Exon
Length: 147
Transcript: IGSF4.fAug05
Length: 147
Transcript: IGSF4.fAug05
Exon
Length: 153
Transcript: IGSF4.fAug05
Length: 153
Transcript: IGSF4.fAug05
Exon
Length: 138
Transcript: IGSF4.fAug05
Length: 138
Transcript: IGSF4.fAug05
Exon
Length: 185
Transcript: IGSF4.fAug05
Length: 185
Transcript: IGSF4.fAug05
Intron
Length: 263848
Transcript: IGSF4.fAug05
Length: 263848
Transcript: IGSF4.fAug05
Intron
Length: 1621
Transcript: IGSF4.fAug05
Length: 1621
Transcript: IGSF4.fAug05
Intron
Length: 7009
Transcript: IGSF4.fAug05
Length: 7009
Transcript: IGSF4.fAug05
Intron
Length: 2081
Transcript: IGSF4.fAug05
Length: 2081
Transcript: IGSF4.fAug05
Exon
Length: 253
Transcript: IGSF4.gAug05
Length: 253
Transcript: IGSF4.gAug05
Exon
Length: 173
Transcript: IGSF4.gAug05
Length: 173
Transcript: IGSF4.gAug05
Exon
Length: 84
Transcript: IGSF4.gAug05
Length: 84
Transcript: IGSF4.gAug05
Exon
Length: 33
Transcript: IGSF4.gAug05
Length: 33
Transcript: IGSF4.gAug05
Exon
Length: 54
Transcript: IGSF4.gAug05
Length: 54
Transcript: IGSF4.gAug05
Exon
Length: 132
Transcript: IGSF4.gAug05
Length: 132
Transcript: IGSF4.gAug05
Exon
Length: 189
Transcript: IGSF4.gAug05
Length: 189
Transcript: IGSF4.gAug05
Intron
Length: 3111
Transcript: IGSF4.gAug05
Length: 3111
Transcript: IGSF4.gAug05
Intron
Length: 4950
Transcript: IGSF4.gAug05
Length: 4950
Transcript: IGSF4.gAug05
Intron
Length: 11135
Transcript: IGSF4.gAug05
Length: 11135
Transcript: IGSF4.gAug05
Intron
Length: 7464
Transcript: IGSF4.gAug05
Length: 7464
Transcript: IGSF4.gAug05
Intron
Length: 12112
Transcript: IGSF4.gAug05
Length: 12112
Transcript: IGSF4.gAug05
Intron
Length: 2051
Transcript: IGSF4.gAug05
Length: 2051
Transcript: IGSF4.gAug05
Reaction
Expected peak: 219
Associated peak: 210,211,212,213,214,231,241,242,243
Repeated 51 time
Molarity: 1.70M
Forward: IGSF4.F6
Reverse: IGSF4.R1
Expected peak: 219
Associated peak: 210,211,212,213,214,231,241,242,243
Repeated 51 time
Molarity: 1.70M
Forward: IGSF4.F6
Reverse: IGSF4.R1
Exon
Length: 184
Transcript: IGSF4.hAug05
Length: 184
Transcript: IGSF4.hAug05
Exon
Length: 147
Transcript: IGSF4.hAug05
Length: 147
Transcript: IGSF4.hAug05
Exon
Length: 153
Transcript: IGSF4.hAug05
Length: 153
Transcript: IGSF4.hAug05
Exon
Length: 138
Transcript: IGSF4.hAug05
Length: 138
Transcript: IGSF4.hAug05
Exon
Length: 159
Transcript: IGSF4.hAug05
Length: 159
Transcript: IGSF4.hAug05
Intron
Length: 376
Transcript: IGSF4.hAug05
Length: 376
Transcript: IGSF4.hAug05
Intron
Length: 1621
Transcript: IGSF4.hAug05
Length: 1621
Transcript: IGSF4.hAug05
Intron
Length: 7009
Transcript: IGSF4.hAug05
Length: 7009
Transcript: IGSF4.hAug05
Intron
Length: 2081
Transcript: IGSF4.hAug05
Length: 2081
Transcript: IGSF4.hAug05
Exon
Length: 49
Transcript: IGSF4.iAug05
Length: 49
Transcript: IGSF4.iAug05
Exon
Length: 147
Transcript: IGSF4.iAug05
Length: 147
Transcript: IGSF4.iAug05
Exon
Length: 153
Transcript: IGSF4.iAug05
Length: 153
Transcript: IGSF4.iAug05
Exon
Length: 138
Transcript: IGSF4.iAug05
Length: 138
Transcript: IGSF4.iAug05
Exon
Length: 77
Transcript: IGSF4.iAug05
Length: 77
Transcript: IGSF4.iAug05
Intron
Length: 16411
Transcript: IGSF4.iAug05
Length: 16411
Transcript: IGSF4.iAug05
Intron
Length: 1621
Transcript: IGSF4.iAug05
Length: 1621
Transcript: IGSF4.iAug05
Intron
Length: 7009
Transcript: IGSF4.iAug05
Length: 7009
Transcript: IGSF4.iAug05
Intron
Length: 2081
Transcript: IGSF4.iAug05
Length: 2081
Transcript: IGSF4.iAug05
Exon
Length: 6357
Transcript: IGSF4.jAug05
Length: 6357
Transcript: IGSF4.jAug05
Exon
Length: 132
Transcript: IGSF4.jAug05
Length: 132
Transcript: IGSF4.jAug05
Exon
Length: 266
Transcript: IGSF4.jAug05
Length: 266
Transcript: IGSF4.jAug05
Intron
Length: 19630
Transcript: IGSF4.jAug05
Length: 19630
Transcript: IGSF4.jAug05
Intron
Length: 2051
Transcript: IGSF4.jAug05
Length: 2051
Transcript: IGSF4.jAug05
Exon
Length: 127
Transcript: IGSF4.kAug05
Length: 127
Transcript: IGSF4.kAug05
Exon
Length: 33
Transcript: IGSF4.kAug05
Length: 33
Transcript: IGSF4.kAug05
Exon
Length: 132
Transcript: IGSF4.kAug05
Length: 132
Transcript: IGSF4.kAug05
Exon
Length: 266
Transcript: IGSF4.kAug05
Length: 266
Transcript: IGSF4.kAug05
Intron
Length: 16169
Transcript: IGSF4.kAug05
Length: 16169
Transcript: IGSF4.kAug05
Intron
Length: 19630
Transcript: IGSF4.kAug05
Length: 19630
Transcript: IGSF4.kAug05
Intron
Length: 2051
Transcript: IGSF4.kAug05
Length: 2051
Transcript: IGSF4.kAug05
Exon
Length: 8322
Transcript: IGSF4.lAug05
Length: 8322
Transcript: IGSF4.lAug05
Exon
Length: 266
Transcript: IGSF4.lAug05
Length: 266
Transcript: IGSF4.lAug05
Intron
Length: 2051
Transcript: IGSF4.lAug05
Length: 2051
Transcript: IGSF4.lAug05
Exon
Length: 123
Transcript: IGSF4.mAug05
Length: 123
Transcript: IGSF4.mAug05
Exon
Length: 33
Transcript: IGSF4.mAug05
Length: 33
Transcript: IGSF4.mAug05
Exon
Length: 54
Transcript: IGSF4.mAug05
Length: 54
Transcript: IGSF4.mAug05
Exon
Length: 132
Transcript: IGSF4.mAug05
Length: 132
Transcript: IGSF4.mAug05
Exon
Length: 172
Transcript: IGSF4.mAug05
Length: 172
Transcript: IGSF4.mAug05
Intron
Length: 16169
Transcript: IGSF4.mAug05
Length: 16169
Transcript: IGSF4.mAug05
Intron
Length: 7464
Transcript: IGSF4.mAug05
Length: 7464
Transcript: IGSF4.mAug05
Intron
Length: 12112
Transcript: IGSF4.mAug05
Length: 12112
Transcript: IGSF4.mAug05
Intron
Length: 9017
Transcript: IGSF4.mAug05
Length: 9017
Transcript: IGSF4.mAug05
Exon
Length: 159
Transcript: IGSF4.nAug05
Length: 159
Transcript: IGSF4.nAug05
Exon
Length: 132
Transcript: IGSF4.nAug05
Length: 132
Transcript: IGSF4.nAug05
Exon
Length: 266
Transcript: IGSF4.nAug05
Length: 266
Transcript: IGSF4.nAug05
Intron
Length: 12112
Transcript: IGSF4.nAug05
Length: 12112
Transcript: IGSF4.nAug05
Intron
Length: 2051
Transcript: IGSF4.nAug05
Length: 2051
Transcript: IGSF4.nAug05
Exon
Length: 30
Transcript: IGSF4.oAug05
Length: 30
Transcript: IGSF4.oAug05
Exon
Length: 33
Transcript: IGSF4.oAug05
Length: 33
Transcript: IGSF4.oAug05
Exon
Length: 54
Transcript: IGSF4.oAug05
Length: 54
Transcript: IGSF4.oAug05
Exon
Length: 132
Transcript: IGSF4.oAug05
Length: 132
Transcript: IGSF4.oAug05
Exon
Length: 391
Transcript: IGSF4.oAug05
Length: 391
Transcript: IGSF4.oAug05
Intron
Length: 11135
Transcript: IGSF4.oAug05
Length: 11135
Transcript: IGSF4.oAug05
Intron
Length: 7464
Transcript: IGSF4.oAug05
Length: 7464
Transcript: IGSF4.oAug05
Intron
Length: 12112
Transcript: IGSF4.oAug05
Length: 12112
Transcript: IGSF4.oAug05
Intron
Length: 9017
Transcript: IGSF4.oAug05
Length: 9017
Transcript: IGSF4.oAug05
Reaction
Expected peak: 219
Associated peak: 210,211,212,213,214,231,241,242,243
Repeated 51 time
Molarity: 1.70M
Forward: IGSF4.F6
Reverse: IGSF4.R1
Expected peak: 219
Associated peak: 210,211,212,213,214,231,241,242,243
Repeated 51 time
Molarity: 1.70M
Forward: IGSF4.F6
Reverse: IGSF4.R1
Exon
Length: 273
Transcript: IGSF4.pAug05
Length: 273
Transcript: IGSF4.pAug05
Exon
Length: 132
Transcript: IGSF4.pAug05
Length: 132
Transcript: IGSF4.pAug05
Exon
Length: 263
Transcript: IGSF4.pAug05
Length: 263
Transcript: IGSF4.pAug05
Intron
Length: 15062
Transcript: IGSF4.pAug05
Length: 15062
Transcript: IGSF4.pAug05
Intron
Length: 2051
Transcript: IGSF4.pAug05
Length: 2051
Transcript: IGSF4.pAug05
Exon
Length: 87
Transcript: IGSF4.qAug05
Length: 87
Transcript: IGSF4.qAug05
Exon
Length: 84
Transcript: IGSF4.qAug05
Length: 84
Transcript: IGSF4.qAug05
Exon
Length: 33
Transcript: IGSF4.qAug05
Length: 33
Transcript: IGSF4.qAug05
Exon
Length: 333
Transcript: IGSF4.qAug05
Length: 333
Transcript: IGSF4.qAug05
Intron
Length: 4950
Transcript: IGSF4.qAug05
Length: 4950
Transcript: IGSF4.qAug05
Intron
Length: 11135
Transcript: IGSF4.qAug05
Length: 11135
Transcript: IGSF4.qAug05
Intron
Length: 7464
Transcript: IGSF4.qAug05
Length: 7464
Transcript: IGSF4.qAug05
Exon
Length: 632
Transcript: IGSF4.shed1.aAug05
Length: 632
Transcript: IGSF4.shed1.aAug05
Exon
Length: 617
Transcript: IGSF4.shed2.aAug05
Length: 617
Transcript: IGSF4.shed2.aAug05
Exon
Length: 445
Transcript: IGSF4.shed3.aAug05
Length: 445
Transcript: IGSF4.shed3.aAug05
IGSF4.F6
CACCACCATCCTTACCATCATC
CACCACCATCCTTACCATCATC
IGSF4.R1
AGAATGATGAGCAAGCACAGC
AGAATGATGAGCAAGCACAGC