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Home Public data LGFUS Public Data Identification of alternative splicing markers for breast cancer 2. Breast Validation Screen

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https://rnomics.med.usherbrooke.ca/palace?purl=/data/related/3/gene/478945

2. Breast Validation Screen ⚙

Gene primer pair list : Primer pairs

Forward	Reverse	Occurences	View
VDR.F2	VDR.R2	51	View
VDR.F3	VDR.R3	51	View

current - show all

Page 1 of 1, records 1 to 2 of 2

Transcript map : VDR

Exon
Length: 440
Transcript: VDR.aAug05

Exon
Length: 81
Transcript: VDR.aAug05

Exon
Length: 148
Transcript: VDR.aAug05

Exon
Length: 131
Transcript: VDR.aAug05

Exon
Length: 185
Transcript: VDR.aAug05

Exon
Length: 121
Transcript: VDR.aAug05

Exon
Length: 172
Transcript: VDR.aAug05

Exon
Length: 152
Transcript: VDR.aAug05

Exon
Length: 117
Transcript: VDR.aAug05

Exon
Length: 2362
Transcript: VDR.aAug05

Intron
Length: 21789
Transcript: VDR.aAug05

Intron
Length: 3578
Transcript: VDR.aAug05

Intron
Length: 13790
Transcript: VDR.aAug05

Intron
Length: 7358
Transcript: VDR.aAug05

Intron
Length: 254
Transcript: VDR.aAug05

Intron
Length: 1327
Transcript: VDR.aAug05

Intron
Length: 8821
Transcript: VDR.aAug05

Intron
Length: 205
Transcript: VDR.aAug05

Intron
Length: 1329
Transcript: VDR.aAug05

Reaction
Expected peak: 493
Associated peak: 481,483,484,494,497,513
Repeated 51 time
Molarity: 0.41M
Forward: VDR.F2
Reverse: VDR.R2

Exon
Length: 77
Transcript: VDR.bAug05

Exon
Length: 122
Transcript: VDR.bAug05

Exon
Length: 81
Transcript: VDR.bAug05

Exon
Length: 148
Transcript: VDR.bAug05

Exon
Length: 131
Transcript: VDR.bAug05

Exon
Length: 185
Transcript: VDR.bAug05

Exon
Length: 121
Transcript: VDR.bAug05

Exon
Length: 172
Transcript: VDR.bAug05

Exon
Length: 152
Transcript: VDR.bAug05

Exon
Length: 117
Transcript: VDR.bAug05

Exon
Length: 3467
Transcript: VDR.bAug05

Intron
Length: 4996
Transcript: VDR.bAug05

Intron
Length: 17062
Transcript: VDR.bAug05

Intron
Length: 3578
Transcript: VDR.bAug05

Intron
Length: 13790
Transcript: VDR.bAug05

Intron
Length: 7358
Transcript: VDR.bAug05

Intron
Length: 254
Transcript: VDR.bAug05

Intron
Length: 1327
Transcript: VDR.bAug05

Intron
Length: 8821
Transcript: VDR.bAug05

Intron
Length: 205
Transcript: VDR.bAug05

Intron
Length: 1329
Transcript: VDR.bAug05

Reaction
Expected peak: 224
Associated peak: 238,239,240,241,248,249,250
Repeated 51 time
Molarity: 2.40M
Forward: VDR.F2
Reverse: VDR.R2

Reaction
Expected peak: 273
Associated peak: 282,283,284,285,286
Repeated 51 time
Molarity: 9.65M
Forward: VDR.F3
Reverse: VDR.R3

Exon
Length: 77
Transcript: VDR.cAug05

Exon
Length: 81
Transcript: VDR.cAug05

Exon
Length: 148
Transcript: VDR.cAug05

Exon
Length: 131
Transcript: VDR.cAug05

Exon
Length: 185
Transcript: VDR.cAug05

Exon
Length: 121
Transcript: VDR.cAug05

Exon
Length: 172
Transcript: VDR.cAug05

Exon
Length: 152
Transcript: VDR.cAug05

Exon
Length: 117
Transcript: VDR.cAug05

Exon
Length: 3469
Transcript: VDR.cAug05

Intron
Length: 22180
Transcript: VDR.cAug05

Intron
Length: 3578
Transcript: VDR.cAug05

Intron
Length: 13790
Transcript: VDR.cAug05

Intron
Length: 7358
Transcript: VDR.cAug05

Intron
Length: 254
Transcript: VDR.cAug05

Intron
Length: 1327
Transcript: VDR.cAug05

Intron
Length: 8821
Transcript: VDR.cAug05

Intron
Length: 205
Transcript: VDR.cAug05

Intron
Length: 1329
Transcript: VDR.cAug05

Reaction
Expected peak: 102
Associated peak: 108,109,110,111
Repeated 51 time
Molarity: 27.69M
Forward: VDR.F2
Reverse: VDR.R2

Exon
Length: 62
Transcript: VDR.dAug05

Exon
Length: 122
Transcript: VDR.dAug05

Exon
Length: 148
Transcript: VDR.dAug05

Exon
Length: 131
Transcript: VDR.dAug05

Exon
Length: 185
Transcript: VDR.dAug05

Exon
Length: 121
Transcript: VDR.dAug05

Exon
Length: 168
Transcript: VDR.dAug05

Intron
Length: 4996
Transcript: VDR.dAug05

Intron
Length: 20721
Transcript: VDR.dAug05

Intron
Length: 13790
Transcript: VDR.dAug05

Intron
Length: 7358
Transcript: VDR.dAug05

Intron
Length: 254
Transcript: VDR.dAug05

Intron
Length: 1327
Transcript: VDR.dAug05

Reaction
Expected peak: 192
Associated peak: 204,205,206,207,208,215
Repeated 51 time
Molarity: 2.58M
Forward: VDR.F3
Reverse: VDR.R3

VDR.F2
AGCGCGGAACAGCTTGTC

VDR.R3
GCATTGAAGTGAAAGCCAGTG

VDR.F3
TCCTCTGATAGCCTCATGCC

VDR.R2
CAGGTAAGTGGAGCCCAGG