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Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: BMP4
Exon
Length: 136
Transcript: BMP4.aAug05
Length: 136
Transcript: BMP4.aAug05
Exon
Length: 125
Transcript: BMP4.aAug05
Length: 125
Transcript: BMP4.aAug05
Exon
Length: 377
Transcript: BMP4.aAug05
Length: 377
Transcript: BMP4.aAug05
Exon
Length: 1153
Transcript: BMP4.aAug05
Length: 1153
Transcript: BMP4.aAug05
Intron
Length: 3358
Transcript: BMP4.aAug05
Length: 3358
Transcript: BMP4.aAug05
Intron
Length: 1046
Transcript: BMP4.aAug05
Length: 1046
Transcript: BMP4.aAug05
Intron
Length: 964
Transcript: BMP4.aAug05
Length: 964
Transcript: BMP4.aAug05
Reaction
Expected peak: 128
Associated peak: 134,135,136,137,138,140,141
Repeated 51 time
Molarity: 33.46M
Forward: BMP4.u.f.4
Reverse: BMP4.u.r.5
Expected peak: 128
Associated peak: 134,135,136,137,138,140,141
Repeated 51 time
Molarity: 33.46M
Forward: BMP4.u.f.4
Reverse: BMP4.u.r.5
Reaction
Expected peak: 271
Associated peak: 278,279,280,281,282
Repeated 51 time
Molarity: 8.33M
Forward: BMP4.u.f.4
Reverse: BMP4.u.r.8
Expected peak: 271
Associated peak: 278,279,280,281,282
Repeated 51 time
Molarity: 8.33M
Forward: BMP4.u.f.4
Reverse: BMP4.u.r.8
Exon
Length: 345
Transcript: BMP4.bAug05
Length: 345
Transcript: BMP4.bAug05
Exon
Length: 125
Transcript: BMP4.bAug05
Length: 125
Transcript: BMP4.bAug05
Exon
Length: 377
Transcript: BMP4.bAug05
Length: 377
Transcript: BMP4.bAug05
Exon
Length: 1150
Transcript: BMP4.bAug05
Length: 1150
Transcript: BMP4.bAug05
Intron
Length: 3149
Transcript: BMP4.bAug05
Length: 3149
Transcript: BMP4.bAug05
Intron
Length: 1046
Transcript: BMP4.bAug05
Length: 1046
Transcript: BMP4.bAug05
Intron
Length: 964
Transcript: BMP4.bAug05
Length: 964
Transcript: BMP4.bAug05
Reaction
Expected peak: 337
Associated peak: 339,341,342,343,344,351,352,353,354,355,356,357,360
Repeated 51 time
Molarity: 9.34M
Forward: BMP4.u.f.4
Reverse: BMP4.u.r.5
Expected peak: 337
Associated peak: 339,341,342,343,344,351,352,353,354,355,356,357,360
Repeated 51 time
Molarity: 9.34M
Forward: BMP4.u.f.4
Reverse: BMP4.u.r.5
Reaction
Expected peak: 480
Associated peak: 493,495,498,500,506
Repeated 51 time
Molarity: 2.21M
Forward: BMP4.u.f.4
Reverse: BMP4.u.r.8
Expected peak: 480
Associated peak: 493,495,498,500,506
Repeated 51 time
Molarity: 2.21M
Forward: BMP4.u.f.4
Reverse: BMP4.u.r.8
Exon
Length: 184
Transcript: BMP4.cAug05
Length: 184
Transcript: BMP4.cAug05
Exon
Length: 377
Transcript: BMP4.cAug05
Length: 377
Transcript: BMP4.cAug05
Exon
Length: 1151
Transcript: BMP4.cAug05
Length: 1151
Transcript: BMP4.cAug05
Intron
Length: 1046
Transcript: BMP4.cAug05
Length: 1046
Transcript: BMP4.cAug05
Intron
Length: 964
Transcript: BMP4.cAug05
Length: 964
Transcript: BMP4.cAug05
Exon
Length: 60
Transcript: BMP4.dAug05
Length: 60
Transcript: BMP4.dAug05
Exon
Length: 125
Transcript: BMP4.dAug05
Length: 125
Transcript: BMP4.dAug05
Exon
Length: 324
Transcript: BMP4.dAug05
Length: 324
Transcript: BMP4.dAug05
Exon
Length: 634
Transcript: BMP4.dAug05
Length: 634
Transcript: BMP4.dAug05
Intron
Length: 3358
Transcript: BMP4.dAug05
Length: 3358
Transcript: BMP4.dAug05
Intron
Length: 1099
Transcript: BMP4.dAug05
Length: 1099
Transcript: BMP4.dAug05
Intron
Length: 964
Transcript: BMP4.dAug05
Length: 964
Transcript: BMP4.dAug05
Reaction
Expected peak: 128
Associated peak: 134,135,136,137,138,140,141
Repeated 51 time
Molarity: 33.46M
Forward: BMP4.u.f.4
Reverse: BMP4.u.r.5
Expected peak: 128
Associated peak: 134,135,136,137,138,140,141
Repeated 51 time
Molarity: 33.46M
Forward: BMP4.u.f.4
Reverse: BMP4.u.r.5
Reaction
Expected peak: 218
Associated peak: 231,232,233,234
Repeated 51 time
Molarity: 0.26M
Forward: BMP4.u.f.4
Reverse: BMP4.u.r.8
Expected peak: 218
Associated peak: 231,232,233,234
Repeated 51 time
Molarity: 0.26M
Forward: BMP4.u.f.4
Reverse: BMP4.u.r.8
Exon
Length: 154
Transcript: BMP4.eAug05
Length: 154
Transcript: BMP4.eAug05
Exon
Length: 324
Transcript: BMP4.eAug05
Length: 324
Transcript: BMP4.eAug05
Exon
Length: 281
Transcript: BMP4.eAug05
Length: 281
Transcript: BMP4.eAug05
Intron
Length: 1099
Transcript: BMP4.eAug05
Length: 1099
Transcript: BMP4.eAug05
Intron
Length: 964
Transcript: BMP4.eAug05
Length: 964
Transcript: BMP4.eAug05
Exon
Length: 42
Transcript: BMP4.fAug05
Length: 42
Transcript: BMP4.fAug05
Exon
Length: 125
Transcript: BMP4.fAug05
Length: 125
Transcript: BMP4.fAug05
Exon
Length: 377
Transcript: BMP4.fAug05
Length: 377
Transcript: BMP4.fAug05
Exon
Length: 154
Transcript: BMP4.fAug05
Length: 154
Transcript: BMP4.fAug05
Intron
Length: 5319
Transcript: BMP4.fAug05
Length: 5319
Transcript: BMP4.fAug05
Intron
Length: 1046
Transcript: BMP4.fAug05
Length: 1046
Transcript: BMP4.fAug05
Intron
Length: 964
Transcript: BMP4.fAug05
Length: 964
Transcript: BMP4.fAug05
Exon
Length: 99
Transcript: BMP4.gAug05
Length: 99
Transcript: BMP4.gAug05
Exon
Length: 1306
Transcript: BMP4.gAug05
Length: 1306
Transcript: BMP4.gAug05
Exon
Length: 80
Transcript: BMP4.gAug05
Length: 80
Transcript: BMP4.gAug05
Intron
Length: 578
Transcript: BMP4.gAug05
Length: 578
Transcript: BMP4.gAug05
Intron
Length: 34
Transcript: BMP4.gAug05
Length: 34
Transcript: BMP4.gAug05
Exon
Length: 457
Transcript: BMP4.shed1.aAug05
Length: 457
Transcript: BMP4.shed1.aAug05
Exon
Length: 990
Transcript: BMP4.shed2.aAug05
Length: 990
Transcript: BMP4.shed2.aAug05
Exon
Length: 584
Transcript: BMP4.shed3.aAug05
Length: 584
Transcript: BMP4.shed3.aAug05
BMP4.u.f.4
CGAGAAGGCAGAGGAGGAG
CGAGAAGGCAGAGGAGGAG
BMP4.u.r.5
CAAACTTGCTGGAAAGGCTC
CAAACTTGCTGGAAAGGCTC
BMP4.u.r.8
ATCAAACTAGCATGGCTCGC
ATCAAACTAGCATGGCTCGC