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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: HIF1A
Exon
Length: 340
Transcript: HIF1A.aAug05
Length: 340
Transcript: HIF1A.aAug05
Exon
Length: 191
Transcript: HIF1A.aAug05
Length: 191
Transcript: HIF1A.aAug05
Exon
Length: 146
Transcript: HIF1A.aAug05
Length: 146
Transcript: HIF1A.aAug05
Exon
Length: 85
Transcript: HIF1A.aAug05
Length: 85
Transcript: HIF1A.aAug05
Exon
Length: 113
Transcript: HIF1A.aAug05
Length: 113
Transcript: HIF1A.aAug05
Exon
Length: 203
Transcript: HIF1A.aAug05
Length: 203
Transcript: HIF1A.aAug05
Exon
Length: 107
Transcript: HIF1A.aAug05
Length: 107
Transcript: HIF1A.aAug05
Exon
Length: 148
Transcript: HIF1A.aAug05
Length: 148
Transcript: HIF1A.aAug05
Exon
Length: 221
Transcript: HIF1A.aAug05
Length: 221
Transcript: HIF1A.aAug05
Exon
Length: 287
Transcript: HIF1A.aAug05
Length: 287
Transcript: HIF1A.aAug05
Exon
Length: 123
Transcript: HIF1A.aAug05
Length: 123
Transcript: HIF1A.aAug05
Exon
Length: 434
Transcript: HIF1A.aAug05
Length: 434
Transcript: HIF1A.aAug05
Exon
Length: 109
Transcript: HIF1A.aAug05
Length: 109
Transcript: HIF1A.aAug05
Exon
Length: 127
Transcript: HIF1A.aAug05
Length: 127
Transcript: HIF1A.aAug05
Exon
Length: 2016
Transcript: HIF1A.aAug05
Length: 2016
Transcript: HIF1A.aAug05
Intron
Length: 24542
Transcript: HIF1A.aAug05
Length: 24542
Transcript: HIF1A.aAug05
Intron
Length: 936
Transcript: HIF1A.aAug05
Length: 936
Transcript: HIF1A.aAug05
Intron
Length: 84
Transcript: HIF1A.aAug05
Length: 84
Transcript: HIF1A.aAug05
Intron
Length: 4882
Transcript: HIF1A.aAug05
Length: 4882
Transcript: HIF1A.aAug05
Intron
Length: 634
Transcript: HIF1A.aAug05
Length: 634
Transcript: HIF1A.aAug05
Intron
Length: 4762
Transcript: HIF1A.aAug05
Length: 4762
Transcript: HIF1A.aAug05
Intron
Length: 1613
Transcript: HIF1A.aAug05
Length: 1613
Transcript: HIF1A.aAug05
Intron
Length: 2603
Transcript: HIF1A.aAug05
Length: 2603
Transcript: HIF1A.aAug05
Intron
Length: 977
Transcript: HIF1A.aAug05
Length: 977
Transcript: HIF1A.aAug05
Intron
Length: 2131
Transcript: HIF1A.aAug05
Length: 2131
Transcript: HIF1A.aAug05
Intron
Length: 127
Transcript: HIF1A.aAug05
Length: 127
Transcript: HIF1A.aAug05
Intron
Length: 3516
Transcript: HIF1A.aAug05
Length: 3516
Transcript: HIF1A.aAug05
Intron
Length: 877
Transcript: HIF1A.aAug05
Length: 877
Transcript: HIF1A.aAug05
Intron
Length: 1116
Transcript: HIF1A.aAug05
Length: 1116
Transcript: HIF1A.aAug05
Reaction
Expected peak: 572
Associated peak: 575,579,581,582,584,585,588,591,592,594,595,597,600,603,608
Repeated 51 time
Molarity: 14.44M
Forward: HIF1A.au.2.f
Reverse: HIF1A.u.r.13
Expected peak: 572
Associated peak: 575,579,581,582,584,585,588,591,592,594,595,597,600,603,608
Repeated 51 time
Molarity: 14.44M
Forward: HIF1A.au.2.f
Reverse: HIF1A.u.r.13
Exon
Length: 351
Transcript: HIF1A.bAug05
Length: 351
Transcript: HIF1A.bAug05
Exon
Length: 191
Transcript: HIF1A.bAug05
Length: 191
Transcript: HIF1A.bAug05
Exon
Length: 146
Transcript: HIF1A.bAug05
Length: 146
Transcript: HIF1A.bAug05
Exon
Length: 85
Transcript: HIF1A.bAug05
Length: 85
Transcript: HIF1A.bAug05
Exon
Length: 113
Transcript: HIF1A.bAug05
Length: 113
Transcript: HIF1A.bAug05
Exon
Length: 203
Transcript: HIF1A.bAug05
Length: 203
Transcript: HIF1A.bAug05
Exon
Length: 107
Transcript: HIF1A.bAug05
Length: 107
Transcript: HIF1A.bAug05
Exon
Length: 148
Transcript: HIF1A.bAug05
Length: 148
Transcript: HIF1A.bAug05
Exon
Length: 221
Transcript: HIF1A.bAug05
Length: 221
Transcript: HIF1A.bAug05
Exon
Length: 287
Transcript: HIF1A.bAug05
Length: 287
Transcript: HIF1A.bAug05
Exon
Length: 123
Transcript: HIF1A.bAug05
Length: 123
Transcript: HIF1A.bAug05
Exon
Length: 434
Transcript: HIF1A.bAug05
Length: 434
Transcript: HIF1A.bAug05
Exon
Length: 109
Transcript: HIF1A.bAug05
Length: 109
Transcript: HIF1A.bAug05
Exon
Length: 1325
Transcript: HIF1A.bAug05
Length: 1325
Transcript: HIF1A.bAug05
Intron
Length: 24542
Transcript: HIF1A.bAug05
Length: 24542
Transcript: HIF1A.bAug05
Intron
Length: 936
Transcript: HIF1A.bAug05
Length: 936
Transcript: HIF1A.bAug05
Intron
Length: 84
Transcript: HIF1A.bAug05
Length: 84
Transcript: HIF1A.bAug05
Intron
Length: 4882
Transcript: HIF1A.bAug05
Length: 4882
Transcript: HIF1A.bAug05
Intron
Length: 634
Transcript: HIF1A.bAug05
Length: 634
Transcript: HIF1A.bAug05
Intron
Length: 4762
Transcript: HIF1A.bAug05
Length: 4762
Transcript: HIF1A.bAug05
Intron
Length: 1613
Transcript: HIF1A.bAug05
Length: 1613
Transcript: HIF1A.bAug05
Intron
Length: 2603
Transcript: HIF1A.bAug05
Length: 2603
Transcript: HIF1A.bAug05
Intron
Length: 977
Transcript: HIF1A.bAug05
Length: 977
Transcript: HIF1A.bAug05
Intron
Length: 2131
Transcript: HIF1A.bAug05
Length: 2131
Transcript: HIF1A.bAug05
Intron
Length: 127
Transcript: HIF1A.bAug05
Length: 127
Transcript: HIF1A.bAug05
Intron
Length: 3516
Transcript: HIF1A.bAug05
Length: 3516
Transcript: HIF1A.bAug05
Intron
Length: 2120
Transcript: HIF1A.bAug05
Length: 2120
Transcript: HIF1A.bAug05
Reaction
Expected peak: 572
Associated peak: 575,579,581,582,584,585,588,591,592,594,595,597,600,603,608
Repeated 51 time
Molarity: 14.44M
Forward: HIF1A.au.2.f
Reverse: HIF1A.u.r.13
Expected peak: 572
Associated peak: 575,579,581,582,584,585,588,591,592,594,595,597,600,603,608
Repeated 51 time
Molarity: 14.44M
Forward: HIF1A.au.2.f
Reverse: HIF1A.u.r.13
Exon
Length: 214
Transcript: HIF1A.cAug05
Length: 214
Transcript: HIF1A.cAug05
Exon
Length: 160
Transcript: HIF1A.cAug05
Length: 160
Transcript: HIF1A.cAug05
Exon
Length: 141
Transcript: HIF1A.cAug05
Length: 141
Transcript: HIF1A.cAug05
Exon
Length: 105
Transcript: HIF1A.cAug05
Length: 105
Transcript: HIF1A.cAug05
Exon
Length: 159
Transcript: HIF1A.cAug05
Length: 159
Transcript: HIF1A.cAug05
Exon
Length: 69
Transcript: HIF1A.cAug05
Length: 69
Transcript: HIF1A.cAug05
Exon
Length: 63
Transcript: HIF1A.cAug05
Length: 63
Transcript: HIF1A.cAug05
Exon
Length: 151
Transcript: HIF1A.cAug05
Length: 151
Transcript: HIF1A.cAug05
Exon
Length: 96
Transcript: HIF1A.cAug05
Length: 96
Transcript: HIF1A.cAug05
Exon
Length: 1479
Transcript: HIF1A.cAug05
Length: 1479
Transcript: HIF1A.cAug05
Intron
Length: 4287
Transcript: HIF1A.cAug05
Length: 4287
Transcript: HIF1A.cAug05
Intron
Length: 176
Transcript: HIF1A.cAug05
Length: 176
Transcript: HIF1A.cAug05
Intron
Length: 1283
Transcript: HIF1A.cAug05
Length: 1283
Transcript: HIF1A.cAug05
Intron
Length: 7354
Transcript: HIF1A.cAug05
Length: 7354
Transcript: HIF1A.cAug05
Intron
Length: 1818
Transcript: HIF1A.cAug05
Length: 1818
Transcript: HIF1A.cAug05
Intron
Length: 707
Transcript: HIF1A.cAug05
Length: 707
Transcript: HIF1A.cAug05
Intron
Length: 3336
Transcript: HIF1A.cAug05
Length: 3336
Transcript: HIF1A.cAug05
Intron
Length: 10409
Transcript: HIF1A.cAug05
Length: 10409
Transcript: HIF1A.cAug05
Intron
Length: 2046
Transcript: HIF1A.cAug05
Length: 2046
Transcript: HIF1A.cAug05
Exon
Length: 221
Transcript: HIF1A.dAug05
Length: 221
Transcript: HIF1A.dAug05
Exon
Length: 287
Transcript: HIF1A.dAug05
Length: 287
Transcript: HIF1A.dAug05
Exon
Length: 292
Transcript: HIF1A.dAug05
Length: 292
Transcript: HIF1A.dAug05
Intron
Length: 977
Transcript: HIF1A.dAug05
Length: 977
Transcript: HIF1A.dAug05
Intron
Length: 2381
Transcript: HIF1A.dAug05
Length: 2381
Transcript: HIF1A.dAug05
Exon
Length: 52
Transcript: HIF1A.eAug05
Length: 52
Transcript: HIF1A.eAug05
Exon
Length: 191
Transcript: HIF1A.eAug05
Length: 191
Transcript: HIF1A.eAug05
Exon
Length: 146
Transcript: HIF1A.eAug05
Length: 146
Transcript: HIF1A.eAug05
Exon
Length: 85
Transcript: HIF1A.eAug05
Length: 85
Transcript: HIF1A.eAug05
Exon
Length: 113
Transcript: HIF1A.eAug05
Length: 113
Transcript: HIF1A.eAug05
Exon
Length: 180
Transcript: HIF1A.eAug05
Length: 180
Transcript: HIF1A.eAug05
Intron
Length: 21435
Transcript: HIF1A.eAug05
Length: 21435
Transcript: HIF1A.eAug05
Intron
Length: 936
Transcript: HIF1A.eAug05
Length: 936
Transcript: HIF1A.eAug05
Intron
Length: 84
Transcript: HIF1A.eAug05
Length: 84
Transcript: HIF1A.eAug05
Intron
Length: 4882
Transcript: HIF1A.eAug05
Length: 4882
Transcript: HIF1A.eAug05
Intron
Length: 634
Transcript: HIF1A.eAug05
Length: 634
Transcript: HIF1A.eAug05
Exon
Length: 148
Transcript: HIF1A.fAug05
Length: 148
Transcript: HIF1A.fAug05
Exon
Length: 160
Transcript: HIF1A.fAug05
Length: 160
Transcript: HIF1A.fAug05
Exon
Length: 141
Transcript: HIF1A.fAug05
Length: 141
Transcript: HIF1A.fAug05
Exon
Length: 105
Transcript: HIF1A.fAug05
Length: 105
Transcript: HIF1A.fAug05
Exon
Length: 105
Transcript: HIF1A.fAug05
Length: 105
Transcript: HIF1A.fAug05
Intron
Length: 32590
Transcript: HIF1A.fAug05
Length: 32590
Transcript: HIF1A.fAug05
Intron
Length: 176
Transcript: HIF1A.fAug05
Length: 176
Transcript: HIF1A.fAug05
Intron
Length: 1283
Transcript: HIF1A.fAug05
Length: 1283
Transcript: HIF1A.fAug05
Intron
Length: 7354
Transcript: HIF1A.fAug05
Length: 7354
Transcript: HIF1A.fAug05
Exon
Length: 155
Transcript: HIF1A.gAug05
Length: 155
Transcript: HIF1A.gAug05
Exon
Length: 123
Transcript: HIF1A.gAug05
Length: 123
Transcript: HIF1A.gAug05
Exon
Length: 280
Transcript: HIF1A.gAug05
Length: 280
Transcript: HIF1A.gAug05
Intron
Length: 3395
Transcript: HIF1A.gAug05
Length: 3395
Transcript: HIF1A.gAug05
Intron
Length: 127
Transcript: HIF1A.gAug05
Length: 127
Transcript: HIF1A.gAug05
Reaction
Expected peak: 285
Associated peak: 287,288,289,290,291
Repeated 51 time
Molarity: 0.73M
Forward: HIF1A.au.2.f
Reverse: HIF1A.u.r.13
Expected peak: 285
Associated peak: 287,288,289,290,291
Repeated 51 time
Molarity: 0.73M
Forward: HIF1A.au.2.f
Reverse: HIF1A.u.r.13
Exon
Length: 13
Transcript: HIF1A.hAug05
Length: 13
Transcript: HIF1A.hAug05
Exon
Length: 148
Transcript: HIF1A.hAug05
Length: 148
Transcript: HIF1A.hAug05
Exon
Length: 486
Transcript: HIF1A.hAug05
Length: 486
Transcript: HIF1A.hAug05
Intron
Length: 1613
Transcript: HIF1A.hAug05
Length: 1613
Transcript: HIF1A.hAug05
Intron
Length: 2603
Transcript: HIF1A.hAug05
Length: 2603
Transcript: HIF1A.hAug05
Exon
Length: 213
Transcript: HIF1A.iAug05
Length: 213
Transcript: HIF1A.iAug05
Exon
Length: 771
Transcript: HIF1A.iAug05
Length: 771
Transcript: HIF1A.iAug05
Intron
Length: 1116
Transcript: HIF1A.iAug05
Length: 1116
Transcript: HIF1A.iAug05
Exon
Length: 187
Transcript: HIF1A.shed1.aAug05
Length: 187
Transcript: HIF1A.shed1.aAug05
Exon
Length: 298
Transcript: HIF1A.shed2.aAug05
Length: 298
Transcript: HIF1A.shed2.aAug05
Exon
Length: 568
Transcript: HIF1A.shed3.aAug05
Length: 568
Transcript: HIF1A.shed3.aAug05
Exon
Length: 900
Transcript: HIF1A.shed4.aAug05
Length: 900
Transcript: HIF1A.shed4.aAug05
Exon
Length: 817
Transcript: HIF1A.shed5.aAug05
Length: 817
Transcript: HIF1A.shed5.aAug05
Exon
Length: 306
Transcript: HIF1A.shed6.aAug05
Length: 306
Transcript: HIF1A.shed6.aAug05
Exon
Length: 263
Transcript: HIF1A.shed7.aAug05
Length: 263
Transcript: HIF1A.shed7.aAug05
HIF1A.u.r.13
TCCAACTTGAATTCATTGACCA
TCCAACTTGAATTCATTGACCA
HIF1A.au.2.f
GGTATTATTCAGCACGACTTGATTT
GGTATTATTCAGCACGACTTGATTT