2. Breast Validation Screen - Rnomics 📊 Palace

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Home Public data LGFUS Public Data Identification of alternative splicing markers for breast cancer 2. Breast Validation Screen

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https://rnomics.med.usherbrooke.ca/palace?purl=/data/related/3/gene/484834

2. Breast Validation Screen ⚙

Transcript map : CASC4

Exon
Length: 626
Transcript: CASC4.aAug05

Exon
Length: 55
Transcript: CASC4.aAug05

Exon
Length: 103
Transcript: CASC4.aAug05

Exon
Length: 91
Transcript: CASC4.aAug05

Exon
Length: 145
Transcript: CASC4.aAug05

Exon
Length: 81
Transcript: CASC4.aAug05

Exon
Length: 99
Transcript: CASC4.aAug05

Exon
Length: 171
Transcript: CASC4.aAug05

Exon
Length: 168
Transcript: CASC4.aAug05

Exon
Length: 2426
Transcript: CASC4.aAug05

Intron
Length: 33608
Transcript: CASC4.aAug05

Intron
Length: 5665
Transcript: CASC4.aAug05

Intron
Length: 3200
Transcript: CASC4.aAug05

Intron
Length: 5684
Transcript: CASC4.aAug05

Intron
Length: 329
Transcript: CASC4.aAug05

Intron
Length: 41372
Transcript: CASC4.aAug05

Intron
Length: 1017
Transcript: CASC4.aAug05

Intron
Length: 21910
Transcript: CASC4.aAug05

Intron
Length: 10281
Transcript: CASC4.aAug05

Reaction
Expected peak: 295
Associated peak: 295,296,297,298,299
Repeated 51 time
Molarity: 12.13M
Forward: CASC4.F1
Reverse: NM_177974-R1

Reaction
Expected peak: 576
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: CASC4.F1
Reverse: CASC4.R1

Exon
Length: 626
Transcript: CASC4.bAug05

Exon
Length: 55
Transcript: CASC4.bAug05

Exon
Length: 103
Transcript: CASC4.bAug05

Exon
Length: 91
Transcript: CASC4.bAug05

Exon
Length: 145
Transcript: CASC4.bAug05

Exon
Length: 81
Transcript: CASC4.bAug05

Exon
Length: 99
Transcript: CASC4.bAug05

Exon
Length: 171
Transcript: CASC4.bAug05

Exon
Length: 2422
Transcript: CASC4.bAug05

Intron
Length: 33608
Transcript: CASC4.bAug05

Intron
Length: 5665
Transcript: CASC4.bAug05

Intron
Length: 3200
Transcript: CASC4.bAug05

Intron
Length: 5684
Transcript: CASC4.bAug05

Intron
Length: 329
Transcript: CASC4.bAug05

Intron
Length: 41372
Transcript: CASC4.bAug05

Intron
Length: 1017
Transcript: CASC4.bAug05

Intron
Length: 32359
Transcript: CASC4.bAug05

Reaction
Expected peak: 127
Associated peak: 131,132,133,134,135,136
Repeated 51 time
Molarity: 27.03M
Forward: CASC4.F1
Reverse: NM_177974-R1

Reaction
Expected peak: 576
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: CASC4.F1
Reverse: CASC4.R1

Exon
Length: 264
Transcript: CASC4.cAug05

Exon
Length: 55
Transcript: CASC4.cAug05

Exon
Length: 103
Transcript: CASC4.cAug05

Exon
Length: 91
Transcript: CASC4.cAug05

Exon
Length: 145
Transcript: CASC4.cAug05

Exon
Length: 152
Transcript: CASC4.cAug05

Intron
Length: 33608
Transcript: CASC4.cAug05

Intron
Length: 5665
Transcript: CASC4.cAug05

Intron
Length: 3200
Transcript: CASC4.cAug05

Intron
Length: 5684
Transcript: CASC4.cAug05

Intron
Length: 329
Transcript: CASC4.cAug05

Exon
Length: 302
Transcript: CASC4.dAug05

Exon
Length: 59
Transcript: CASC4.dAug05

Exon
Length: 99
Transcript: CASC4.dAug05

Exon
Length: 171
Transcript: CASC4.dAug05

Exon
Length: 168
Transcript: CASC4.dAug05

Exon
Length: 101
Transcript: CASC4.dAug05

Exon
Length: 246
Transcript: CASC4.dAug05

Intron
Length: 10357
Transcript: CASC4.dAug05

Intron
Length: 22007
Transcript: CASC4.dAug05

Intron
Length: 1017
Transcript: CASC4.dAug05

Intron
Length: 21910
Transcript: CASC4.dAug05

Intron
Length: 10281
Transcript: CASC4.dAug05

Intron
Length: 1077
Transcript: CASC4.dAug05

Reaction
Expected peak: 295
Associated peak: 295,296,297,298,299
Repeated 51 time
Molarity: 12.13M
Forward: CASC4.F1
Reverse: NM_177974-R1

Exon
Length: 626
Transcript: CASC4.eAug05

Exon
Length: 55
Transcript: CASC4.eAug05

Exon
Length: 103
Transcript: CASC4.eAug05

Exon
Length: 145
Transcript: CASC4.eAug05

Exon
Length: 81
Transcript: CASC4.eAug05

Exon
Length: 358
Transcript: CASC4.eAug05

Intron
Length: 33608
Transcript: CASC4.eAug05

Intron
Length: 5665
Transcript: CASC4.eAug05

Intron
Length: 8975
Transcript: CASC4.eAug05

Intron
Length: 329
Transcript: CASC4.eAug05

Intron
Length: 10225
Transcript: CASC4.eAug05

Exon
Length: 619
Transcript: CASC4.fAug05

Exon
Length: 1299
Transcript: CASC4.fAug05

Intron
Length: 17881
Transcript: CASC4.fAug05

Exon
Length: 664
Transcript: CASC4.gAug05

Exon
Length: 103
Transcript: CASC4.gAug05

Exon
Length: 91
Transcript: CASC4.gAug05

Exon
Length: 145
Transcript: CASC4.gAug05

Exon
Length: 81
Transcript: CASC4.gAug05

Exon
Length: 275
Transcript: CASC4.gAug05

Intron
Length: 39328
Transcript: CASC4.gAug05

Intron
Length: 3200
Transcript: CASC4.gAug05

Intron
Length: 5684
Transcript: CASC4.gAug05

Intron
Length: 329
Transcript: CASC4.gAug05

Intron
Length: 7557
Transcript: CASC4.gAug05

Exon
Length: 179
Transcript: CASC4.shed1.aAug05

Exon
Length: 665
Transcript: CASC4.shed2.aAug05

Exon
Length: 552
Transcript: CASC4.shed3.aAug05

CASC4.R1
TTCTTCCTATAGTCCTGAAGCTGG

NM_177974-R1
GCAGGATCCATTTGAAGCTC

CASC4.F1
GCTCAAACTTGGACAGTGAACC

Gene primer pair list : Primer pairs

Forward	Reverse	Occurences	View
CASC4.F1	CASC4.R1	51	View
CASC4.F1	NM_177974-R1	51	View

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