2. Breast Validation Screen - Rnomics 📊 Palace

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Home Public data LGFUS Public Data Identification of alternative splicing markers for breast cancer 2. Breast Validation Screen

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https://rnomics.med.usherbrooke.ca/palace?purl=/data/related/3/gene/492817

2. Breast Validation Screen ⚙

Transcript map : DPH1

Exon
Length: 119
Transcript: DPH1.aAug05

Exon
Length: 153
Transcript: DPH1.aAug05

Exon
Length: 64
Transcript: DPH1.aAug05

Exon
Length: 122
Transcript: DPH1.aAug05

Exon
Length: 158
Transcript: DPH1.aAug05

Exon
Length: 122
Transcript: DPH1.aAug05

Exon
Length: 69
Transcript: DPH1.aAug05

Exon
Length: 157
Transcript: DPH1.aAug05

Exon
Length: 101
Transcript: DPH1.aAug05

Exon
Length: 79
Transcript: DPH1.aAug05

Exon
Length: 141
Transcript: DPH1.aAug05

Exon
Length: 108
Transcript: DPH1.aAug05

Exon
Length: 1294
Transcript: DPH1.aAug05

Intron
Length: 3274
Transcript: DPH1.aAug05

Intron
Length: 121
Transcript: DPH1.aAug05

Intron
Length: 2127
Transcript: DPH1.aAug05

Intron
Length: 437
Transcript: DPH1.aAug05

Intron
Length: 148
Transcript: DPH1.aAug05

Intron
Length: 2798
Transcript: DPH1.aAug05

Intron
Length: 394
Transcript: DPH1.aAug05

Intron
Length: 130
Transcript: DPH1.aAug05

Intron
Length: 497
Transcript: DPH1.aAug05

Intron
Length: 299
Transcript: DPH1.aAug05

Intron
Length: 146
Transcript: DPH1.aAug05

Intron
Length: 729
Transcript: DPH1.aAug05

Reaction
Expected peak: 305
Associated peak: 314,315,316,317,318,319,320,321
Repeated 51 time
Molarity: 25.44M
Forward: DPH1.F22
Reverse: DPH1.R13

Reaction
Expected peak: 352
Associated peak: 377,378,379,380,381,382,383,384,385
Repeated 51 time
Molarity: 20.95M
Forward: DPH1.F14
Reverse: DPH1.R13

Reaction
Expected peak: 479
Associated peak: 468,472,487,488,489,490,491,493,495
Repeated 102 time
Molarity: 31.18M
Forward: DPH1.F1
Reverse: DPH1.R1

Exon
Length: 69
Transcript: DPH1.bAug05

Exon
Length: 153
Transcript: DPH1.bAug05

Exon
Length: 64
Transcript: DPH1.bAug05

Exon
Length: 122
Transcript: DPH1.bAug05

Exon
Length: 125
Transcript: DPH1.bAug05

Exon
Length: 122
Transcript: DPH1.bAug05

Exon
Length: 69
Transcript: DPH1.bAug05

Exon
Length: 157
Transcript: DPH1.bAug05

Exon
Length: 101
Transcript: DPH1.bAug05

Exon
Length: 79
Transcript: DPH1.bAug05

Exon
Length: 141
Transcript: DPH1.bAug05

Exon
Length: 108
Transcript: DPH1.bAug05

Exon
Length: 409
Transcript: DPH1.bAug05

Intron
Length: 3274
Transcript: DPH1.bAug05

Intron
Length: 121
Transcript: DPH1.bAug05

Intron
Length: 2127
Transcript: DPH1.bAug05

Intron
Length: 437
Transcript: DPH1.bAug05

Intron
Length: 181
Transcript: DPH1.bAug05

Intron
Length: 2798
Transcript: DPH1.bAug05

Intron
Length: 394
Transcript: DPH1.bAug05

Intron
Length: 130
Transcript: DPH1.bAug05

Intron
Length: 497
Transcript: DPH1.bAug05

Intron
Length: 299
Transcript: DPH1.bAug05

Intron
Length: 146
Transcript: DPH1.bAug05

Intron
Length: 1100
Transcript: DPH1.bAug05

Reaction
Expected peak: 108
Associated peak: 112,113,114,115,116,117,118
Repeated 102 time
Molarity: 5.26M
Forward: DPH1.F1
Reverse: DPH1.R1

Reaction
Expected peak: 272
Associated peak: 282,283,284,285,286
Repeated 51 time
Molarity: 2.74M
Forward: DPH1.F22
Reverse: DPH1.R13

Reaction
Expected peak: 319
Associated peak: 336,337,338,339,340,341,342,343
Repeated 51 time
Molarity: 2.09M
Forward: DPH1.F14
Reverse: DPH1.R13

Exon
Length: 72
Transcript: DPH1.cAug05

Exon
Length: 153
Transcript: DPH1.cAug05

Exon
Length: 64
Transcript: DPH1.cAug05

Exon
Length: 158
Transcript: DPH1.cAug05

Exon
Length: 122
Transcript: DPH1.cAug05

Exon
Length: 69
Transcript: DPH1.cAug05

Exon
Length: 157
Transcript: DPH1.cAug05

Exon
Length: 101
Transcript: DPH1.cAug05

Exon
Length: 79
Transcript: DPH1.cAug05

Exon
Length: 141
Transcript: DPH1.cAug05

Exon
Length: 108
Transcript: DPH1.cAug05

Exon
Length: 766
Transcript: DPH1.cAug05

Intron
Length: 3274
Transcript: DPH1.cAug05

Intron
Length: 121
Transcript: DPH1.cAug05

Intron
Length: 2686
Transcript: DPH1.cAug05

Intron
Length: 148
Transcript: DPH1.cAug05

Intron
Length: 2798
Transcript: DPH1.cAug05

Intron
Length: 394
Transcript: DPH1.cAug05

Intron
Length: 130
Transcript: DPH1.cAug05

Intron
Length: 497
Transcript: DPH1.cAug05

Intron
Length: 299
Transcript: DPH1.cAug05

Intron
Length: 146
Transcript: DPH1.cAug05

Intron
Length: 729
Transcript: DPH1.cAug05

Reaction
Expected peak: 230
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: DPH1.F14
Reverse: DPH1.R13

Reaction
Expected peak: 479
Associated peak: 468,472,487,488,489,490,491,493,495
Repeated 102 time
Molarity: 31.18M
Forward: DPH1.F1
Reverse: DPH1.R1

Exon
Length: 98
Transcript: DPH1.dAug05

Exon
Length: 153
Transcript: DPH1.dAug05

Exon
Length: 64
Transcript: DPH1.dAug05

Exon
Length: 122
Transcript: DPH1.dAug05

Exon
Length: 158
Transcript: DPH1.dAug05

Exon
Length: 122
Transcript: DPH1.dAug05

Exon
Length: 69
Transcript: DPH1.dAug05

Exon
Length: 157
Transcript: DPH1.dAug05

Exon
Length: 101
Transcript: DPH1.dAug05

Exon
Length: 141
Transcript: DPH1.dAug05

Exon
Length: 108
Transcript: DPH1.dAug05

Exon
Length: 441
Transcript: DPH1.dAug05

Intron
Length: 3274
Transcript: DPH1.dAug05

Intron
Length: 121
Transcript: DPH1.dAug05

Intron
Length: 2127
Transcript: DPH1.dAug05

Intron
Length: 437
Transcript: DPH1.dAug05

Intron
Length: 148
Transcript: DPH1.dAug05

Intron
Length: 2798
Transcript: DPH1.dAug05

Intron
Length: 394
Transcript: DPH1.dAug05

Intron
Length: 130
Transcript: DPH1.dAug05

Intron
Length: 875
Transcript: DPH1.dAug05

Intron
Length: 146
Transcript: DPH1.dAug05

Intron
Length: 1100
Transcript: DPH1.dAug05

Reaction
Expected peak: 108
Associated peak: 112,113,114,115,116,117,118
Repeated 102 time
Molarity: 5.26M
Forward: DPH1.F1
Reverse: DPH1.R1

Reaction
Expected peak: 305
Associated peak: 314,315,316,317,318,319,320,321
Repeated 51 time
Molarity: 25.44M
Forward: DPH1.F22
Reverse: DPH1.R13

Reaction
Expected peak: 352
Associated peak: 377,378,379,380,381,382,383,384,385
Repeated 51 time
Molarity: 20.95M
Forward: DPH1.F14
Reverse: DPH1.R13

Exon
Length: 35
Transcript: DPH1.eAug05

Exon
Length: 101
Transcript: DPH1.eAug05

Exon
Length: 79
Transcript: DPH1.eAug05

Exon
Length: 141
Transcript: DPH1.eAug05

Exon
Length: 1657
Transcript: DPH1.eAug05

Intron
Length: 130
Transcript: DPH1.eAug05

Intron
Length: 497
Transcript: DPH1.eAug05

Intron
Length: 299
Transcript: DPH1.eAug05

Intron
Length: 146
Transcript: DPH1.eAug05

Reaction
Expected peak: 1208
Associated peak: None
Repeated 102 time
Molarity: 0.00M
Forward: DPH1.F1
Reverse: DPH1.R1

Exon
Length: 1273
Transcript: DPH1.fAug05

Exon
Length: 1657
Transcript: DPH1.fAug05

Intron
Length: 146
Transcript: DPH1.fAug05

Reaction
Expected peak: 1208
Associated peak: None
Repeated 102 time
Molarity: 0.00M
Forward: DPH1.F1
Reverse: DPH1.R1

Exon
Length: 69
Transcript: DPH1.gAug05

Exon
Length: 464
Transcript: DPH1.gAug05

Exon
Length: 871
Transcript: DPH1.gAug05

Intron
Length: 146
Transcript: DPH1.gAug05

Intron
Length: 373
Transcript: DPH1.gAug05

Reaction
Expected peak: 835
Associated peak: 756,757,767,769,789,800,814,819,830,841,856,867,878
Repeated 102 time
Molarity: 0.28M
Forward: DPH1.F1
Reverse: DPH1.R1

Exon
Length: 859
Transcript: DPH1.hAug05

Exon
Length: 157
Transcript: DPH1.hAug05

Exon
Length: 101
Transcript: DPH1.hAug05

Exon
Length: 79
Transcript: DPH1.hAug05

Exon
Length: 141
Transcript: DPH1.hAug05

Exon
Length: 108
Transcript: DPH1.hAug05

Exon
Length: 820
Transcript: DPH1.hAug05

Intron
Length: 394
Transcript: DPH1.hAug05

Intron
Length: 130
Transcript: DPH1.hAug05

Intron
Length: 497
Transcript: DPH1.hAug05

Intron
Length: 299
Transcript: DPH1.hAug05

Intron
Length: 146
Transcript: DPH1.hAug05

Intron
Length: 729
Transcript: DPH1.hAug05

Reaction
Expected peak: 479
Associated peak: 468,472,487,488,489,490,491,493,495
Repeated 102 time
Molarity: 31.18M
Forward: DPH1.F1
Reverse: DPH1.R1

Exon
Length: 64
Transcript: DPH1.iAug05

Exon
Length: 153
Transcript: DPH1.iAug05

Exon
Length: 64
Transcript: DPH1.iAug05

Exon
Length: 717
Transcript: DPH1.iAug05

Exon
Length: 309
Transcript: DPH1.iAug05

Intron
Length: 3274
Transcript: DPH1.iAug05

Intron
Length: 121
Transcript: DPH1.iAug05

Intron
Length: 2127
Transcript: DPH1.iAug05

Intron
Length: 148
Transcript: DPH1.iAug05

Reaction
Expected peak: 742
Associated peak: 722,732,733,743,744,754,756,767
Repeated 51 time
Molarity: 0.23M
Forward: DPH1.F22
Reverse: DPH1.R13

Reaction
Expected peak: 789
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: DPH1.F14
Reverse: DPH1.R13

Exon
Length: 45
Transcript: DPH1.jAug05

Exon
Length: 153
Transcript: DPH1.jAug05

Exon
Length: 64
Transcript: DPH1.jAug05

Exon
Length: 122
Transcript: DPH1.jAug05

Exon
Length: 158
Transcript: DPH1.jAug05

Exon
Length: 1313
Transcript: DPH1.jAug05

Intron
Length: 3274
Transcript: DPH1.jAug05

Intron
Length: 121
Transcript: DPH1.jAug05

Intron
Length: 2127
Transcript: DPH1.jAug05

Intron
Length: 437
Transcript: DPH1.jAug05

Intron
Length: 148
Transcript: DPH1.jAug05

Reaction
Expected peak: 305
Associated peak: 314,315,316,317,318,319,320,321
Repeated 51 time
Molarity: 25.44M
Forward: DPH1.F22
Reverse: DPH1.R13

Reaction
Expected peak: 352
Associated peak: 377,378,379,380,381,382,383,384,385
Repeated 51 time
Molarity: 20.95M
Forward: DPH1.F14
Reverse: DPH1.R13

Exon
Length: 507
Transcript: DPH1.kAug05

Exon
Length: 352
Transcript: DPH1.kAug05

Intron
Length: 729
Transcript: DPH1.kAug05

Reaction
Expected peak: 479
Associated peak: 468,472,487,488,489,490,491,493,495
Repeated 102 time
Molarity: 31.18M
Forward: DPH1.F1
Reverse: DPH1.R1

Exon
Length: 36
Transcript: DPH1.lAug05

Exon
Length: 94
Transcript: DPH1.lAug05

Exon
Length: 101
Transcript: DPH1.lAug05

Exon
Length: 79
Transcript: DPH1.lAug05

Exon
Length: 141
Transcript: DPH1.lAug05

Exon
Length: 108
Transcript: DPH1.lAug05

Exon
Length: 205
Transcript: DPH1.lAug05

Intron
Length: 394
Transcript: DPH1.lAug05

Intron
Length: 193
Transcript: DPH1.lAug05

Intron
Length: 497
Transcript: DPH1.lAug05

Intron
Length: 299
Transcript: DPH1.lAug05

Intron
Length: 146
Transcript: DPH1.lAug05

Intron
Length: 729
Transcript: DPH1.lAug05

Reaction
Expected peak: 479
Associated peak: 468,472,487,488,489,490,491,493,495
Repeated 102 time
Molarity: 31.18M
Forward: DPH1.F1
Reverse: DPH1.R1

Exon
Length: 62
Transcript: DPH1.mAug05

Exon
Length: 69
Transcript: DPH1.mAug05

Exon
Length: 388
Transcript: DPH1.mAug05

Exon
Length: 79
Transcript: DPH1.mAug05

Exon
Length: 141
Transcript: DPH1.mAug05

Exon
Length: 108
Transcript: DPH1.mAug05

Exon
Length: 99
Transcript: DPH1.mAug05

Intron
Length: 2798
Transcript: DPH1.mAug05

Intron
Length: 394
Transcript: DPH1.mAug05

Intron
Length: 497
Transcript: DPH1.mAug05

Intron
Length: 299
Transcript: DPH1.mAug05

Intron
Length: 146
Transcript: DPH1.mAug05

Intron
Length: 729
Transcript: DPH1.mAug05

Reaction
Expected peak: 479
Associated peak: 468,472,487,488,489,490,491,493,495
Repeated 102 time
Molarity: 31.18M
Forward: DPH1.F1
Reverse: DPH1.R1

Exon
Length: 1086
Transcript: DPH1.shed1.aAug05

DPH1.R13
CTCACACGATACTCGGCTTTC

DPH1.F14
TCTTTGCCTGTACCATTGTGG

DPH1.R2
AGCTGCTGGAATGAAGTGGC

DPH1.F1
TGCAGGGACGAGAAGGTG

DPH1.F2
CTGGCTCCTTGACGCGCTC

DPH1.R1
AGAGTGGGTGAGGGTGATGG

DPH1.F22
GAAGTGATGGTGATGGGTGAC

Gene primer pair list : Primer pairs

Forward	Reverse	Occurences	View
DPH1.F1	DPH1.R1	51	View
DPH1.F14	DPH1.R13	51	View
DPH1.F2	DPH1.R2	51	View
DPH1.F22	DPH1.R13	51	View

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