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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: CTDP1
Exon
Length: 461
Transcript: CTDP1.aAug05
Length: 461
Transcript: CTDP1.aAug05
Exon
Length: 84
Transcript: CTDP1.aAug05
Length: 84
Transcript: CTDP1.aAug05
Exon
Length: 94
Transcript: CTDP1.aAug05
Length: 94
Transcript: CTDP1.aAug05
Exon
Length: 129
Transcript: CTDP1.aAug05
Length: 129
Transcript: CTDP1.aAug05
Exon
Length: 151
Transcript: CTDP1.aAug05
Length: 151
Transcript: CTDP1.aAug05
Exon
Length: 91
Transcript: CTDP1.aAug05
Length: 91
Transcript: CTDP1.aAug05
Exon
Length: 167
Transcript: CTDP1.aAug05
Length: 167
Transcript: CTDP1.aAug05
Exon
Length: 1038
Transcript: CTDP1.aAug05
Length: 1038
Transcript: CTDP1.aAug05
Exon
Length: 142
Transcript: CTDP1.aAug05
Length: 142
Transcript: CTDP1.aAug05
Exon
Length: 207
Transcript: CTDP1.aAug05
Length: 207
Transcript: CTDP1.aAug05
Exon
Length: 163
Transcript: CTDP1.aAug05
Length: 163
Transcript: CTDP1.aAug05
Exon
Length: 167
Transcript: CTDP1.aAug05
Length: 167
Transcript: CTDP1.aAug05
Exon
Length: 859
Transcript: CTDP1.aAug05
Length: 859
Transcript: CTDP1.aAug05
Intron
Length: 14963
Transcript: CTDP1.aAug05
Length: 14963
Transcript: CTDP1.aAug05
Intron
Length: 668
Transcript: CTDP1.aAug05
Length: 668
Transcript: CTDP1.aAug05
Intron
Length: 1789
Transcript: CTDP1.aAug05
Length: 1789
Transcript: CTDP1.aAug05
Intron
Length: 6778
Transcript: CTDP1.aAug05
Length: 6778
Transcript: CTDP1.aAug05
Intron
Length: 5428
Transcript: CTDP1.aAug05
Length: 5428
Transcript: CTDP1.aAug05
Intron
Length: 2535
Transcript: CTDP1.aAug05
Length: 2535
Transcript: CTDP1.aAug05
Intron
Length: 1352
Transcript: CTDP1.aAug05
Length: 1352
Transcript: CTDP1.aAug05
Intron
Length: 2006
Transcript: CTDP1.aAug05
Length: 2006
Transcript: CTDP1.aAug05
Intron
Length: 133
Transcript: CTDP1.aAug05
Length: 133
Transcript: CTDP1.aAug05
Intron
Length: 10890
Transcript: CTDP1.aAug05
Length: 10890
Transcript: CTDP1.aAug05
Intron
Length: 7285
Transcript: CTDP1.aAug05
Length: 7285
Transcript: CTDP1.aAug05
Intron
Length: 17130
Transcript: CTDP1.aAug05
Length: 17130
Transcript: CTDP1.aAug05
Reaction
Expected peak: 444
Associated peak: 458,460,461,462,463,464,465,466,467
Repeated 51 time
Molarity: 2.27M
Forward: CTDP1.F7
Reverse: CTDP1.R7
Expected peak: 444
Associated peak: 458,460,461,462,463,464,465,466,467
Repeated 51 time
Molarity: 2.27M
Forward: CTDP1.F7
Reverse: CTDP1.R7
Exon
Length: 461
Transcript: CTDP1.bAug05
Length: 461
Transcript: CTDP1.bAug05
Exon
Length: 84
Transcript: CTDP1.bAug05
Length: 84
Transcript: CTDP1.bAug05
Exon
Length: 94
Transcript: CTDP1.bAug05
Length: 94
Transcript: CTDP1.bAug05
Exon
Length: 129
Transcript: CTDP1.bAug05
Length: 129
Transcript: CTDP1.bAug05
Exon
Length: 151
Transcript: CTDP1.bAug05
Length: 151
Transcript: CTDP1.bAug05
Exon
Length: 91
Transcript: CTDP1.bAug05
Length: 91
Transcript: CTDP1.bAug05
Exon
Length: 167
Transcript: CTDP1.bAug05
Length: 167
Transcript: CTDP1.bAug05
Exon
Length: 1038
Transcript: CTDP1.bAug05
Length: 1038
Transcript: CTDP1.bAug05
Exon
Length: 142
Transcript: CTDP1.bAug05
Length: 142
Transcript: CTDP1.bAug05
Exon
Length: 207
Transcript: CTDP1.bAug05
Length: 207
Transcript: CTDP1.bAug05
Exon
Length: 167
Transcript: CTDP1.bAug05
Length: 167
Transcript: CTDP1.bAug05
Exon
Length: 856
Transcript: CTDP1.bAug05
Length: 856
Transcript: CTDP1.bAug05
Intron
Length: 14963
Transcript: CTDP1.bAug05
Length: 14963
Transcript: CTDP1.bAug05
Intron
Length: 668
Transcript: CTDP1.bAug05
Length: 668
Transcript: CTDP1.bAug05
Intron
Length: 1789
Transcript: CTDP1.bAug05
Length: 1789
Transcript: CTDP1.bAug05
Intron
Length: 6778
Transcript: CTDP1.bAug05
Length: 6778
Transcript: CTDP1.bAug05
Intron
Length: 5428
Transcript: CTDP1.bAug05
Length: 5428
Transcript: CTDP1.bAug05
Intron
Length: 2535
Transcript: CTDP1.bAug05
Length: 2535
Transcript: CTDP1.bAug05
Intron
Length: 1352
Transcript: CTDP1.bAug05
Length: 1352
Transcript: CTDP1.bAug05
Intron
Length: 2006
Transcript: CTDP1.bAug05
Length: 2006
Transcript: CTDP1.bAug05
Intron
Length: 133
Transcript: CTDP1.bAug05
Length: 133
Transcript: CTDP1.bAug05
Intron
Length: 18338
Transcript: CTDP1.bAug05
Length: 18338
Transcript: CTDP1.bAug05
Intron
Length: 17130
Transcript: CTDP1.bAug05
Length: 17130
Transcript: CTDP1.bAug05
Reaction
Expected peak: 281
Associated peak: 282,283,284,285,286
Repeated 51 time
Molarity: 7.83M
Forward: CTDP1.F7
Reverse: CTDP1.R7
Expected peak: 281
Associated peak: 282,283,284,285,286
Repeated 51 time
Molarity: 7.83M
Forward: CTDP1.F7
Reverse: CTDP1.R7
Exon
Length: 104
Transcript: CTDP1.cAug05
Length: 104
Transcript: CTDP1.cAug05
Exon
Length: 84
Transcript: CTDP1.cAug05
Length: 84
Transcript: CTDP1.cAug05
Exon
Length: 94
Transcript: CTDP1.cAug05
Length: 94
Transcript: CTDP1.cAug05
Exon
Length: 129
Transcript: CTDP1.cAug05
Length: 129
Transcript: CTDP1.cAug05
Exon
Length: 151
Transcript: CTDP1.cAug05
Length: 151
Transcript: CTDP1.cAug05
Exon
Length: 91
Transcript: CTDP1.cAug05
Length: 91
Transcript: CTDP1.cAug05
Exon
Length: 167
Transcript: CTDP1.cAug05
Length: 167
Transcript: CTDP1.cAug05
Exon
Length: 1038
Transcript: CTDP1.cAug05
Length: 1038
Transcript: CTDP1.cAug05
Exon
Length: 142
Transcript: CTDP1.cAug05
Length: 142
Transcript: CTDP1.cAug05
Exon
Length: 207
Transcript: CTDP1.cAug05
Length: 207
Transcript: CTDP1.cAug05
Exon
Length: 163
Transcript: CTDP1.cAug05
Length: 163
Transcript: CTDP1.cAug05
Exon
Length: 850
Transcript: CTDP1.cAug05
Length: 850
Transcript: CTDP1.cAug05
Intron
Length: 14963
Transcript: CTDP1.cAug05
Length: 14963
Transcript: CTDP1.cAug05
Intron
Length: 668
Transcript: CTDP1.cAug05
Length: 668
Transcript: CTDP1.cAug05
Intron
Length: 1789
Transcript: CTDP1.cAug05
Length: 1789
Transcript: CTDP1.cAug05
Intron
Length: 6778
Transcript: CTDP1.cAug05
Length: 6778
Transcript: CTDP1.cAug05
Intron
Length: 5428
Transcript: CTDP1.cAug05
Length: 5428
Transcript: CTDP1.cAug05
Intron
Length: 2535
Transcript: CTDP1.cAug05
Length: 2535
Transcript: CTDP1.cAug05
Intron
Length: 1352
Transcript: CTDP1.cAug05
Length: 1352
Transcript: CTDP1.cAug05
Intron
Length: 2006
Transcript: CTDP1.cAug05
Length: 2006
Transcript: CTDP1.cAug05
Intron
Length: 133
Transcript: CTDP1.cAug05
Length: 133
Transcript: CTDP1.cAug05
Intron
Length: 10890
Transcript: CTDP1.cAug05
Length: 10890
Transcript: CTDP1.cAug05
Intron
Length: 24582
Transcript: CTDP1.cAug05
Length: 24582
Transcript: CTDP1.cAug05
Reaction
Expected peak: 277
Associated peak: 282,283,284,285,286
Repeated 51 time
Molarity: 7.83M
Forward: CTDP1.F7
Reverse: CTDP1.R7
Expected peak: 277
Associated peak: 282,283,284,285,286
Repeated 51 time
Molarity: 7.83M
Forward: CTDP1.F7
Reverse: CTDP1.R7
Exon
Length: 410
Transcript: CTDP1.dAug05
Length: 410
Transcript: CTDP1.dAug05
Exon
Length: 207
Transcript: CTDP1.dAug05
Length: 207
Transcript: CTDP1.dAug05
Exon
Length: 80
Transcript: CTDP1.dAug05
Length: 80
Transcript: CTDP1.dAug05
Exon
Length: 167
Transcript: CTDP1.dAug05
Length: 167
Transcript: CTDP1.dAug05
Exon
Length: 212
Transcript: CTDP1.dAug05
Length: 212
Transcript: CTDP1.dAug05
Intron
Length: 2281
Transcript: CTDP1.dAug05
Length: 2281
Transcript: CTDP1.dAug05
Intron
Length: 10890
Transcript: CTDP1.dAug05
Length: 10890
Transcript: CTDP1.dAug05
Intron
Length: 7368
Transcript: CTDP1.dAug05
Length: 7368
Transcript: CTDP1.dAug05
Intron
Length: 13264
Transcript: CTDP1.dAug05
Length: 13264
Transcript: CTDP1.dAug05
Exon
Length: 391
Transcript: CTDP1.eAug05
Length: 391
Transcript: CTDP1.eAug05
Exon
Length: 207
Transcript: CTDP1.eAug05
Length: 207
Transcript: CTDP1.eAug05
Exon
Length: 417
Transcript: CTDP1.eAug05
Length: 417
Transcript: CTDP1.eAug05
Intron
Length: 133
Transcript: CTDP1.eAug05
Length: 133
Transcript: CTDP1.eAug05
Intron
Length: 35635
Transcript: CTDP1.eAug05
Length: 35635
Transcript: CTDP1.eAug05
Reaction
Expected peak: 114
Associated peak: 118,119,120,121
Repeated 51 time
Molarity: 3.47M
Forward: CTDP1.F7
Reverse: CTDP1.R7
Expected peak: 114
Associated peak: 118,119,120,121
Repeated 51 time
Molarity: 3.47M
Forward: CTDP1.F7
Reverse: CTDP1.R7
Exon
Length: 964
Transcript: CTDP1.fAug05
Length: 964
Transcript: CTDP1.fAug05
Exon
Length: 850
Transcript: CTDP1.fAug05
Length: 850
Transcript: CTDP1.fAug05
Intron
Length: 17130
Transcript: CTDP1.fAug05
Length: 17130
Transcript: CTDP1.fAug05
Exon
Length: 682
Transcript: CTDP1.shed1.aAug05
Length: 682
Transcript: CTDP1.shed1.aAug05
CTDP1.R7
TCATCCTCGTTGCTGGACTC
TCATCCTCGTTGCTGGACTC
CTDP1.F7
CTCCAGCTCCCTACCCATCC
CTCCAGCTCCCTACCCATCC