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2. Breast Validation Screen 
Gene primer pair list : Primer pairs
Forward Reverse Occurences View
XRCC1.u.f.14 XRCC1.u.r.18 51 View
Transcript map : XRCC1
Exon
Length: 251
Transcript: IRGQ1.shed2.aAug05
Exon
Length: 1195
Transcript: IRGQ1.shed2.aAug05
Intron
Length: 6236
Transcript: IRGQ1.shed2.aAug05
Exon
Length: 351
Transcript: IRGQ1.shed3.aAug05
Exon
Length: 599
Transcript: XRCC1.aAug05
Exon
Length: 93
Transcript: XRCC1.aAug05
Exon
Length: 111
Transcript: XRCC1.aAug05
Exon
Length: 159
Transcript: XRCC1.aAug05
Exon
Length: 75
Transcript: XRCC1.aAug05
Exon
Length: 112
Transcript: XRCC1.aAug05
Exon
Length: 110
Transcript: XRCC1.aAug05
Exon
Length: 112
Transcript: XRCC1.aAug05
Exon
Length: 259
Transcript: XRCC1.aAug05
Exon
Length: 117
Transcript: XRCC1.aAug05
Exon
Length: 94
Transcript: XRCC1.aAug05
Exon
Length: 133
Transcript: XRCC1.aAug05
Exon
Length: 55
Transcript: XRCC1.aAug05
Exon
Length: 140
Transcript: XRCC1.aAug05
Exon
Length: 91
Transcript: XRCC1.aAug05
Exon
Length: 76
Transcript: XRCC1.aAug05
Exon
Length: 466
Transcript: XRCC1.aAug05
Intron
Length: 405
Transcript: XRCC1.aAug05
Intron
Length: 13889
Transcript: XRCC1.aAug05
Intron
Length: 6105
Transcript: XRCC1.aAug05
Intron
Length: 962
Transcript: XRCC1.aAug05
Intron
Length: 96
Transcript: XRCC1.aAug05
Intron
Length: 309
Transcript: XRCC1.aAug05
Intron
Length: 73
Transcript: XRCC1.aAug05
Intron
Length: 521
Transcript: XRCC1.aAug05
Intron
Length: 329
Transcript: XRCC1.aAug05
Intron
Length: 4593
Transcript: XRCC1.aAug05
Intron
Length: 156
Transcript: XRCC1.aAug05
Intron
Length: 488
Transcript: XRCC1.aAug05
Intron
Length: 94
Transcript: XRCC1.aAug05
Intron
Length: 1583
Transcript: XRCC1.aAug05
Intron
Length: 456
Transcript: XRCC1.aAug05
Intron
Length: 106
Transcript: XRCC1.aAug05
Reaction
Expected peak: 241
Associated peak: 249,250,251,252,253,254
Repeated 51 time
Molarity: 44.23M
Forward: XRCC1.u.f.14
Reverse: XRCC1.u.r.18
Exon
Length: 171
Transcript: XRCC1.bAug05
Exon
Length: 93
Transcript: XRCC1.bAug05
Exon
Length: 111
Transcript: XRCC1.bAug05
Exon
Length: 159
Transcript: XRCC1.bAug05
Exon
Length: 75
Transcript: XRCC1.bAug05
Exon
Length: 112
Transcript: XRCC1.bAug05
Exon
Length: 110
Transcript: XRCC1.bAug05
Exon
Length: 106
Transcript: XRCC1.bAug05
Exon
Length: 259
Transcript: XRCC1.bAug05
Exon
Length: 117
Transcript: XRCC1.bAug05
Exon
Length: 94
Transcript: XRCC1.bAug05
Exon
Length: 133
Transcript: XRCC1.bAug05
Exon
Length: 52
Transcript: XRCC1.bAug05
Exon
Length: 140
Transcript: XRCC1.bAug05
Exon
Length: 91
Transcript: XRCC1.bAug05
Exon
Length: 76
Transcript: XRCC1.bAug05
Exon
Length: 199
Transcript: XRCC1.bAug05
Intron
Length: 405
Transcript: XRCC1.bAug05
Intron
Length: 13889
Transcript: XRCC1.bAug05
Intron
Length: 6105
Transcript: XRCC1.bAug05
Intron
Length: 962
Transcript: XRCC1.bAug05
Intron
Length: 96
Transcript: XRCC1.bAug05
Intron
Length: 309
Transcript: XRCC1.bAug05
Intron
Length: 79
Transcript: XRCC1.bAug05
Intron
Length: 521
Transcript: XRCC1.bAug05
Intron
Length: 329
Transcript: XRCC1.bAug05
Intron
Length: 4593
Transcript: XRCC1.bAug05
Intron
Length: 156
Transcript: XRCC1.bAug05
Intron
Length: 491
Transcript: XRCC1.bAug05
Intron
Length: 94
Transcript: XRCC1.bAug05
Intron
Length: 1583
Transcript: XRCC1.bAug05
Intron
Length: 456
Transcript: XRCC1.bAug05
Intron
Length: 106
Transcript: XRCC1.bAug05
Reaction
Expected peak: 235
Associated peak: 249,250,251,252,253,254
Repeated 51 time
Molarity: 44.23M
Forward: XRCC1.u.f.14
Reverse: XRCC1.u.r.18
Exon
Length: 120
Transcript: XRCC1.cAug05
Exon
Length: 93
Transcript: XRCC1.cAug05
Exon
Length: 159
Transcript: XRCC1.cAug05
Exon
Length: 75
Transcript: XRCC1.cAug05
Exon
Length: 112
Transcript: XRCC1.cAug05
Exon
Length: 110
Transcript: XRCC1.cAug05
Exon
Length: 112
Transcript: XRCC1.cAug05
Exon
Length: 259
Transcript: XRCC1.cAug05
Exon
Length: 117
Transcript: XRCC1.cAug05
Exon
Length: 71
Transcript: XRCC1.cAug05
Exon
Length: 82
Transcript: XRCC1.cAug05
Intron
Length: 405
Transcript: XRCC1.cAug05
Intron
Length: 20105
Transcript: XRCC1.cAug05
Intron
Length: 962
Transcript: XRCC1.cAug05
Intron
Length: 96
Transcript: XRCC1.cAug05
Intron
Length: 309
Transcript: XRCC1.cAug05
Intron
Length: 73
Transcript: XRCC1.cAug05
Intron
Length: 521
Transcript: XRCC1.cAug05
Intron
Length: 329
Transcript: XRCC1.cAug05
Intron
Length: 4593
Transcript: XRCC1.cAug05
Intron
Length: 179
Transcript: XRCC1.cAug05
Reaction
Expected peak: 241
Associated peak: 249,250,251,252,253,254
Repeated 51 time
Molarity: 44.23M
Forward: XRCC1.u.f.14
Reverse: XRCC1.u.r.18
Exon
Length: 179
Transcript: XRCC1.dAug05
Exon
Length: 93
Transcript: XRCC1.dAug05
Exon
Length: 111
Transcript: XRCC1.dAug05
Exon
Length: 159
Transcript: XRCC1.dAug05
Exon
Length: 75
Transcript: XRCC1.dAug05
Exon
Length: 112
Transcript: XRCC1.dAug05
Exon
Length: 295
Transcript: XRCC1.dAug05
Exon
Length: 259
Transcript: XRCC1.dAug05
Exon
Length: 117
Transcript: XRCC1.dAug05
Exon
Length: 94
Transcript: XRCC1.dAug05
Exon
Length: 133
Transcript: XRCC1.dAug05
Exon
Length: 55
Transcript: XRCC1.dAug05
Exon
Length: 140
Transcript: XRCC1.dAug05
Exon
Length: 91
Transcript: XRCC1.dAug05
Exon
Length: 76
Transcript: XRCC1.dAug05
Exon
Length: 195
Transcript: XRCC1.dAug05
Intron
Length: 405
Transcript: XRCC1.dAug05
Intron
Length: 13889
Transcript: XRCC1.dAug05
Intron
Length: 6105
Transcript: XRCC1.dAug05
Intron
Length: 962
Transcript: XRCC1.dAug05
Intron
Length: 96
Transcript: XRCC1.dAug05
Intron
Length: 309
Transcript: XRCC1.dAug05
Intron
Length: 521
Transcript: XRCC1.dAug05
Intron
Length: 329
Transcript: XRCC1.dAug05
Intron
Length: 4593
Transcript: XRCC1.dAug05
Intron
Length: 156
Transcript: XRCC1.dAug05
Intron
Length: 488
Transcript: XRCC1.dAug05
Intron
Length: 94
Transcript: XRCC1.dAug05
Intron
Length: 1583
Transcript: XRCC1.dAug05
Intron
Length: 456
Transcript: XRCC1.dAug05
Intron
Length: 106
Transcript: XRCC1.dAug05
Reaction
Expected peak: 314
Associated peak: 283,286,300,314,315,316,317,318,319,320,321
Repeated 51 time
Molarity: 0.67M
Forward: XRCC1.u.f.14
Reverse: XRCC1.u.r.18
Exon
Length: 38
Transcript: XRCC1.eAug05
Exon
Length: 111
Transcript: XRCC1.eAug05
Exon
Length: 159
Transcript: XRCC1.eAug05
Exon
Length: 75
Transcript: XRCC1.eAug05
Exon
Length: 112
Transcript: XRCC1.eAug05
Exon
Length: 110
Transcript: XRCC1.eAug05
Exon
Length: 112
Transcript: XRCC1.eAug05
Exon
Length: 21
Transcript: XRCC1.eAug05
Exon
Length: 140
Transcript: XRCC1.eAug05
Exon
Length: 91
Transcript: XRCC1.eAug05
Exon
Length: 76
Transcript: XRCC1.eAug05
Exon
Length: 178
Transcript: XRCC1.eAug05
Intron
Length: 11072
Transcript: XRCC1.eAug05
Intron
Length: 6105
Transcript: XRCC1.eAug05
Intron
Length: 962
Transcript: XRCC1.eAug05
Intron
Length: 96
Transcript: XRCC1.eAug05
Intron
Length: 309
Transcript: XRCC1.eAug05
Intron
Length: 73
Transcript: XRCC1.eAug05
Intron
Length: 6724
Transcript: XRCC1.eAug05
Intron
Length: 94
Transcript: XRCC1.eAug05
Intron
Length: 1583
Transcript: XRCC1.eAug05
Intron
Length: 456
Transcript: XRCC1.eAug05
Intron
Length: 106
Transcript: XRCC1.eAug05
Reaction
Expected peak: 241
Associated peak: 249,250,251,252,253,254
Repeated 51 time
Molarity: 44.23M
Forward: XRCC1.u.f.14
Reverse: XRCC1.u.r.18
Exon
Length: 169
Transcript: XRCC1.fAug05
Exon
Length: 111
Transcript: XRCC1.fAug05
Exon
Length: 159
Transcript: XRCC1.fAug05
Exon
Length: 75
Transcript: XRCC1.fAug05
Exon
Length: 112
Transcript: XRCC1.fAug05
Exon
Length: 47
Transcript: XRCC1.fAug05
Exon
Length: 259
Transcript: XRCC1.fAug05
Exon
Length: 117
Transcript: XRCC1.fAug05
Exon
Length: 94
Transcript: XRCC1.fAug05
Exon
Length: 133
Transcript: XRCC1.fAug05
Exon
Length: 55
Transcript: XRCC1.fAug05
Exon
Length: 140
Transcript: XRCC1.fAug05
Exon
Length: 107
Transcript: XRCC1.fAug05
Intron
Length: 31847
Transcript: XRCC1.fAug05
Intron
Length: 6105
Transcript: XRCC1.fAug05
Intron
Length: 962
Transcript: XRCC1.fAug05
Intron
Length: 96
Transcript: XRCC1.fAug05
Intron
Length: 557
Transcript: XRCC1.fAug05
Intron
Length: 521
Transcript: XRCC1.fAug05
Intron
Length: 329
Transcript: XRCC1.fAug05
Intron
Length: 4593
Transcript: XRCC1.fAug05
Intron
Length: 156
Transcript: XRCC1.fAug05
Intron
Length: 488
Transcript: XRCC1.fAug05
Intron
Length: 94
Transcript: XRCC1.fAug05
Intron
Length: 1583
Transcript: XRCC1.fAug05
Reaction
Expected peak: 66
Associated peak: 66,67,68,69
Repeated 51 time
Molarity: 22.92M
Forward: XRCC1.u.f.14
Reverse: XRCC1.u.r.18
Exon
Length: 164
Transcript: XRCC1.gAug05
Exon
Length: 93
Transcript: XRCC1.gAug05
Exon
Length: 111
Transcript: XRCC1.gAug05
Exon
Length: 159
Transcript: XRCC1.gAug05
Exon
Length: 75
Transcript: XRCC1.gAug05
Exon
Length: 112
Transcript: XRCC1.gAug05
Exon
Length: 110
Transcript: XRCC1.gAug05
Exon
Length: 130
Transcript: XRCC1.gAug05
Intron
Length: 405
Transcript: XRCC1.gAug05
Intron
Length: 13889
Transcript: XRCC1.gAug05
Intron
Length: 6105
Transcript: XRCC1.gAug05
Intron
Length: 962
Transcript: XRCC1.gAug05
Intron
Length: 96
Transcript: XRCC1.gAug05
Intron
Length: 309
Transcript: XRCC1.gAug05
Intron
Length: 73
Transcript: XRCC1.gAug05
Reaction
Expected peak: 241
Associated peak: 249,250,251,252,253,254
Repeated 51 time
Molarity: 44.23M
Forward: XRCC1.u.f.14
Reverse: XRCC1.u.r.18
Exon
Length: 109
Transcript: XRCC1.hAug05
Exon
Length: 93
Transcript: XRCC1.hAug05
Exon
Length: 111
Transcript: XRCC1.hAug05
Exon
Length: 159
Transcript: XRCC1.hAug05
Exon
Length: 75
Transcript: XRCC1.hAug05
Exon
Length: 112
Transcript: XRCC1.hAug05
Exon
Length: 110
Transcript: XRCC1.hAug05
Exon
Length: 112
Transcript: XRCC1.hAug05
Exon
Length: 32
Transcript: XRCC1.hAug05
Intron
Length: 5362
Transcript: XRCC1.hAug05
Intron
Length: 13889
Transcript: XRCC1.hAug05
Intron
Length: 6105
Transcript: XRCC1.hAug05
Intron
Length: 962
Transcript: XRCC1.hAug05
Intron
Length: 96
Transcript: XRCC1.hAug05
Intron
Length: 309
Transcript: XRCC1.hAug05
Intron
Length: 73
Transcript: XRCC1.hAug05
Intron
Length: 521
Transcript: XRCC1.hAug05
Reaction
Expected peak: 241
Associated peak: 249,250,251,252,253,254
Repeated 51 time
Molarity: 44.23M
Forward: XRCC1.u.f.14
Reverse: XRCC1.u.r.18
Exon
Length: 96
Transcript: XRCC1.iAug05
Exon
Length: 75
Transcript: XRCC1.iAug05
Exon
Length: 109
Transcript: XRCC1.iAug05
Exon
Length: 44
Transcript: XRCC1.iAug05
Intron
Length: 962
Transcript: XRCC1.iAug05
Intron
Length: 99
Transcript: XRCC1.iAug05
Intron
Length: 309
Transcript: XRCC1.iAug05
Exon
Length: 571
Transcript: XRCC1.shed1.aAug05
XRCC1.u.r.18
GTCTCTTGGGAACAGATGGC
XRCC1.u.f.14
AGCCGGATCAACAAGACATC

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