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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: NOTCH3
Exon
Length: 194
Transcript: NOTCH3.aAug05
Length: 194
Transcript: NOTCH3.aAug05
Exon
Length: 79
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Length: 79
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Exon
Length: 143
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Exon
Length: 339
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Exon
Length: 123
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Exon
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Exon
Length: 156
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Exon
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Exon
Length: 114
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Length: 114
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Exon
Length: 114
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Length: 114
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Exon
Length: 234
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Exon
Length: 111
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Exon
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Exon
Length: 152
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Length: 152
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Exon
Length: 114
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Length: 114
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Exon
Length: 156
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Length: 156
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Exon
Length: 226
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Exon
Length: 202
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Length: 202
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Exon
Length: 148
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Length: 148
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Exon
Length: 185
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Length: 185
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Exon
Length: 133
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Length: 133
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Exon
Length: 258
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Length: 258
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Exon
Length: 119
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Length: 119
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Exon
Length: 566
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Length: 566
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Exon
Length: 333
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Length: 333
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Exon
Length: 155
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Length: 155
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Exon
Length: 223
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Length: 223
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Exon
Length: 85
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Length: 85
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Exon
Length: 163
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Length: 163
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Exon
Length: 305
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Length: 305
Transcript: NOTCH3.aAug05
Exon
Length: 148
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Length: 148
Transcript: NOTCH3.aAug05
Exon
Length: 98
Transcript: NOTCH3.aAug05
Length: 98
Transcript: NOTCH3.aAug05
Exon
Length: 2677
Transcript: NOTCH3.aAug05
Length: 2677
Transcript: NOTCH3.aAug05
Intron
Length: 3209
Transcript: NOTCH3.aAug05
Length: 3209
Transcript: NOTCH3.aAug05
Intron
Length: 4980
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Length: 4980
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Intron
Length: 78
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Length: 78
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Length: 92
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Length: 92
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Intron
Length: 87
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Length: 87
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Intron
Length: 1995
Transcript: NOTCH3.aAug05
Length: 1995
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Intron
Length: 98
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Length: 98
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Intron
Length: 640
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Length: 640
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Intron
Length: 240
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Length: 240
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Intron
Length: 542
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Length: 542
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Intron
Length: 116
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Length: 116
Transcript: NOTCH3.aAug05
Intron
Length: 1198
Transcript: NOTCH3.aAug05
Length: 1198
Transcript: NOTCH3.aAug05
Intron
Length: 78
Transcript: NOTCH3.aAug05
Length: 78
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Intron
Length: 237
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Length: 237
Transcript: NOTCH3.aAug05
Intron
Length: 455
Transcript: NOTCH3.aAug05
Length: 455
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Intron
Length: 2493
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Length: 2493
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Intron
Length: 413
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Length: 413
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Intron
Length: 132
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Length: 132
Transcript: NOTCH3.aAug05
Intron
Length: 424
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Length: 424
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Intron
Length: 575
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Length: 575
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Intron
Length: 81
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Length: 81
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Length: 83
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Length: 83
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Intron
Length: 732
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Length: 732
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Intron
Length: 3124
Transcript: NOTCH3.aAug05
Length: 3124
Transcript: NOTCH3.aAug05
Intron
Length: 3242
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Length: 3242
Transcript: NOTCH3.aAug05
Intron
Length: 117
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Length: 117
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Intron
Length: 160
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Length: 160
Transcript: NOTCH3.aAug05
Intron
Length: 2674
Transcript: NOTCH3.aAug05
Length: 2674
Transcript: NOTCH3.aAug05
Intron
Length: 1157
Transcript: NOTCH3.aAug05
Length: 1157
Transcript: NOTCH3.aAug05
Intron
Length: 271
Transcript: NOTCH3.aAug05
Length: 271
Transcript: NOTCH3.aAug05
Intron
Length: 2805
Transcript: NOTCH3.aAug05
Length: 2805
Transcript: NOTCH3.aAug05
Intron
Length: 750
Transcript: NOTCH3.aAug05
Length: 750
Transcript: NOTCH3.aAug05
Reaction
Expected peak: 442
Associated peak: 469,470,471,472,473,476,477,479,482
Repeated 51 time
Molarity: 9.61M
Forward: NOTCH3.F2
Reverse: NOTCH3.R2
Expected peak: 442
Associated peak: 469,470,471,472,473,476,477,479,482
Repeated 51 time
Molarity: 9.61M
Forward: NOTCH3.F2
Reverse: NOTCH3.R2
Exon
Length: 181
Transcript: NOTCH3.bAug05
Length: 181
Transcript: NOTCH3.bAug05
Exon
Length: 148
Transcript: NOTCH3.bAug05
Length: 148
Transcript: NOTCH3.bAug05
Exon
Length: 228
Transcript: NOTCH3.bAug05
Length: 228
Transcript: NOTCH3.bAug05
Intron
Length: 271
Transcript: NOTCH3.bAug05
Length: 271
Transcript: NOTCH3.bAug05
Intron
Length: 2805
Transcript: NOTCH3.bAug05
Length: 2805
Transcript: NOTCH3.bAug05
Exon
Length: 81
Transcript: NOTCH3.cAug05
Length: 81
Transcript: NOTCH3.cAug05
Exon
Length: 226
Transcript: NOTCH3.cAug05
Length: 226
Transcript: NOTCH3.cAug05
Exon
Length: 172
Transcript: NOTCH3.cAug05
Length: 172
Transcript: NOTCH3.cAug05
Intron
Length: 3104
Transcript: NOTCH3.cAug05
Length: 3104
Transcript: NOTCH3.cAug05
Intron
Length: 413
Transcript: NOTCH3.cAug05
Length: 413
Transcript: NOTCH3.cAug05
Reaction
Expected peak: 286
Associated peak: 292,293,294,295
Repeated 51 time
Molarity: 5.41M
Forward: NOTCH3.F2
Reverse: NOTCH3.R2
Expected peak: 286
Associated peak: 292,293,294,295
Repeated 51 time
Molarity: 5.41M
Forward: NOTCH3.F2
Reverse: NOTCH3.R2
Exon
Length: 296
Transcript: NOTCH3.dAug05
Length: 296
Transcript: NOTCH3.dAug05
Exon
Length: 258
Transcript: NOTCH3.dAug05
Length: 258
Transcript: NOTCH3.dAug05
Intron
Length: 81
Transcript: NOTCH3.dAug05
Length: 81
Transcript: NOTCH3.dAug05
Exon
Length: 83
Transcript: NOTCH3.eAug05
Length: 83
Transcript: NOTCH3.eAug05
Exon
Length: 163
Transcript: NOTCH3.eAug05
Length: 163
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Exon
Length: 148
Transcript: NOTCH3.eAug05
Length: 148
Transcript: NOTCH3.eAug05
Exon
Length: 98
Transcript: NOTCH3.eAug05
Length: 98
Transcript: NOTCH3.eAug05
Exon
Length: 80
Transcript: NOTCH3.eAug05
Length: 80
Transcript: NOTCH3.eAug05
Intron
Length: 2674
Transcript: NOTCH3.eAug05
Length: 2674
Transcript: NOTCH3.eAug05
Intron
Length: 1733
Transcript: NOTCH3.eAug05
Length: 1733
Transcript: NOTCH3.eAug05
Intron
Length: 2805
Transcript: NOTCH3.eAug05
Length: 2805
Transcript: NOTCH3.eAug05
Intron
Length: 750
Transcript: NOTCH3.eAug05
Length: 750
Transcript: NOTCH3.eAug05
Exon
Length: 275
Transcript: NOTCH3.shed1.aAug05
Length: 275
Transcript: NOTCH3.shed1.aAug05
NOTCH3.R2
GTCCTGTTCGCAGTGGAAGC
GTCCTGTTCGCAGTGGAAGC
NOTCH3.F2
GAACCCCTGTGAGCATGG
GAACCCCTGTGAGCATGG