2. Breast Validation Screen - Rnomics 📊 Palace

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Home Public data LGFUS Public Data Identification of alternative splicing markers for breast cancer 2. Breast Validation Screen

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https://rnomics.med.usherbrooke.ca/palace?purl=/data/related/3/gene/503527

2. Breast Validation Screen ⚙

Transcript map : BCAS1

Exon
Length: 162
Transcript: BCAS1.aAug05

Exon
Length: 77
Transcript: BCAS1.aAug05

Exon
Length: 70
Transcript: BCAS1.aAug05

Exon
Length: 581
Transcript: BCAS1.aAug05

Exon
Length: 159
Transcript: BCAS1.aAug05

Exon
Length: 45
Transcript: BCAS1.aAug05

Exon
Length: 213
Transcript: BCAS1.aAug05

Exon
Length: 42
Transcript: BCAS1.aAug05

Exon
Length: 168
Transcript: BCAS1.aAug05

Exon
Length: 66
Transcript: BCAS1.aAug05

Exon
Length: 264
Transcript: BCAS1.aAug05

Exon
Length: 1916
Transcript: BCAS1.aAug05

Intron
Length: 11709
Transcript: BCAS1.aAug05

Intron
Length: 492
Transcript: BCAS1.aAug05

Intron
Length: 29112
Transcript: BCAS1.aAug05

Intron
Length: 32341
Transcript: BCAS1.aAug05

Intron
Length: 835
Transcript: BCAS1.aAug05

Intron
Length: 9512
Transcript: BCAS1.aAug05

Intron
Length: 9856
Transcript: BCAS1.aAug05

Intron
Length: 8315
Transcript: BCAS1.aAug05

Intron
Length: 9408
Transcript: BCAS1.aAug05

Intron
Length: 3736
Transcript: BCAS1.aAug05

Intron
Length: 8435
Transcript: BCAS1.aAug05

Reaction
Expected peak: 251
Associated peak: 258,259,260,261,262
Repeated 51 time
Molarity: 16.86M
Forward: BCAS1.F8
Reverse: BCAS1.R3

Reaction
Expected peak: 292
Associated peak: 286,287,288,289,290,291,292,293,295
Repeated 51 time
Molarity: 12.58M
Forward: BCAS1.F9
Reverse: BCAS1.R4

Reaction
Expected peak: 400
Associated peak: 417,418,419,420,421,422,423,427
Repeated 51 time
Molarity: 4.67M
Forward: BCAS1.F4
Reverse: BCAS1.R4

Reaction
Expected peak: 418
Associated peak: 439,440,441,442,443,444,445,446,447
Repeated 51 time
Molarity: 16.44M
Forward: BCAS1.F8
Reverse: BCAS1.R17

Reaction
Expected peak: 486
Associated peak: 479,480,481,482,483,484,485,487
Repeated 51 time
Molarity: 11.81M
Forward: BCAS1.F2
Reverse: BCAS1.R1

Reaction
Expected peak: 501
Associated peak: 467,489,491,492,493,494,495,496
Repeated 51 time
Molarity: 7.55M
Forward: BCAS1.F2
Reverse: BCAS1.R2

Reaction
Expected peak: 519
Associated peak: 482,498,500,505,506,510,511,512,517
Repeated 51 time
Molarity: 9.73M
Forward: BCAS1.F1
Reverse: BCAS1.R1

Exon
Length: 113
Transcript: BCAS1.bAug05

Exon
Length: 77
Transcript: BCAS1.bAug05

Exon
Length: 70
Transcript: BCAS1.bAug05

Exon
Length: 581
Transcript: BCAS1.bAug05

Exon
Length: 159
Transcript: BCAS1.bAug05

Exon
Length: 45
Transcript: BCAS1.bAug05

Exon
Length: 213
Transcript: BCAS1.bAug05

Exon
Length: 42
Transcript: BCAS1.bAug05

Exon
Length: 264
Transcript: BCAS1.bAug05

Exon
Length: 1019
Transcript: BCAS1.bAug05

Intron
Length: 11709
Transcript: BCAS1.bAug05

Intron
Length: 492
Transcript: BCAS1.bAug05

Intron
Length: 29112
Transcript: BCAS1.bAug05

Intron
Length: 32341
Transcript: BCAS1.bAug05

Intron
Length: 835
Transcript: BCAS1.bAug05

Intron
Length: 9512
Transcript: BCAS1.bAug05

Intron
Length: 9856
Transcript: BCAS1.bAug05

Intron
Length: 21693
Transcript: BCAS1.bAug05

Intron
Length: 8435
Transcript: BCAS1.bAug05

Reaction
Expected peak: 166
Associated peak: 179,180,181,182
Repeated 51 time
Molarity: 2.32M
Forward: BCAS1.F4
Reverse: BCAS1.R4

Reaction
Expected peak: 252
Associated peak: 258,259,260,261,277,278,279,280
Repeated 51 time
Molarity: 3.95M
Forward: BCAS1.F2
Reverse: BCAS1.R1

Reaction
Expected peak: 267
Associated peak: 272,273,274,275,290,291
Repeated 51 time
Molarity: 3.22M
Forward: BCAS1.F2
Reverse: BCAS1.R2

Reaction
Expected peak: 285
Associated peak: 286,287,288,289,290,307,309
Repeated 51 time
Molarity: 3.29M
Forward: BCAS1.F1
Reverse: BCAS1.R1

Exon
Length: 301
Transcript: BCAS1.cAug05

Exon
Length: 159
Transcript: BCAS1.cAug05

Exon
Length: 45
Transcript: BCAS1.cAug05

Exon
Length: 135
Transcript: BCAS1.cAug05

Exon
Length: 213
Transcript: BCAS1.cAug05

Exon
Length: 168
Transcript: BCAS1.cAug05

Exon
Length: 264
Transcript: BCAS1.cAug05

Exon
Length: 71
Transcript: BCAS1.cAug05

Exon
Length: 4749
Transcript: BCAS1.cAug05

Intron
Length: 32341
Transcript: BCAS1.cAug05

Intron
Length: 835
Transcript: BCAS1.cAug05

Intron
Length: 2365
Transcript: BCAS1.cAug05

Intron
Length: 7012
Transcript: BCAS1.cAug05

Intron
Length: 18213
Transcript: BCAS1.cAug05

Intron
Length: 13210
Transcript: BCAS1.cAug05

Intron
Length: 8435
Transcript: BCAS1.cAug05

Intron
Length: 3401
Transcript: BCAS1.cAug05

Reaction
Expected peak: 185
Associated peak: 197,198,199,214,215,216
Repeated 51 time
Molarity: 13.91M
Forward: BCAS1.F8
Reverse: BCAS1.R3

Reaction
Expected peak: 226
Associated peak: 231,232,233,234,235,236,237
Repeated 51 time
Molarity: 2.36M
Forward: BCAS1.F9
Reverse: BCAS1.R4

Reaction
Expected peak: 352
Associated peak: 371,372,373,374,375,376,377,378
Repeated 51 time
Molarity: 1.60M
Forward: BCAS1.F8
Reverse: BCAS1.R17

Reaction
Expected peak: 378
Associated peak: 380,383,388,393,394,395,433,434,435,436,437,438,439
Repeated 51 time
Molarity: 1.62M
Forward: BCAS1.F2
Reverse: BCAS1.R1

Reaction
Expected peak: 393
Associated peak: 408,409,410,411,412,413,414,425,430,445,447,448,449,450,451,452
Repeated 51 time
Molarity: 1.04M
Forward: BCAS1.F2
Reverse: BCAS1.R2

Reaction
Expected peak: 411
Associated peak: 424,426,427,428,429,430,431,433,455,459,461,462,463,464,465,466,467
Repeated 51 time
Molarity: 1.28M
Forward: BCAS1.F1
Reverse: BCAS1.R1

Exon
Length: 240
Transcript: BCAS1.dAug05

Exon
Length: 159
Transcript: BCAS1.dAug05

Exon
Length: 45
Transcript: BCAS1.dAug05

Exon
Length: 135
Transcript: BCAS1.dAug05

Exon
Length: 213
Transcript: BCAS1.dAug05

Exon
Length: 59
Transcript: BCAS1.dAug05

Intron
Length: 32341
Transcript: BCAS1.dAug05

Intron
Length: 835
Transcript: BCAS1.dAug05

Intron
Length: 2365
Transcript: BCAS1.dAug05

Intron
Length: 7012
Transcript: BCAS1.dAug05

Intron
Length: 31591
Transcript: BCAS1.dAug05

Reaction
Expected peak: 210
Associated peak: 219,220,221,222
Repeated 51 time
Molarity: 3.09M
Forward: BCAS1.F2
Reverse: BCAS1.R1

Reaction
Expected peak: 225
Associated peak: 234,235,236,237
Repeated 51 time
Molarity: 2.84M
Forward: BCAS1.F2
Reverse: BCAS1.R2

Reaction
Expected peak: 243
Associated peak: 250,251,252,253,254
Repeated 51 time
Molarity: 2.75M
Forward: BCAS1.F1
Reverse: BCAS1.R1

Exon
Length: 38
Transcript: BCAS1.eAug05

Exon
Length: 45
Transcript: BCAS1.eAug05

Exon
Length: 213
Transcript: BCAS1.eAug05

Exon
Length: 42
Transcript: BCAS1.eAug05

Exon
Length: 66
Transcript: BCAS1.eAug05

Exon
Length: 264
Transcript: BCAS1.eAug05

Exon
Length: 148
Transcript: BCAS1.eAug05

Intron
Length: 835
Transcript: BCAS1.eAug05

Intron
Length: 9512
Transcript: BCAS1.eAug05

Intron
Length: 9856
Transcript: BCAS1.eAug05

Intron
Length: 17891
Transcript: BCAS1.eAug05

Intron
Length: 3736
Transcript: BCAS1.eAug05

Intron
Length: 8435
Transcript: BCAS1.eAug05

Reaction
Expected peak: 232
Associated peak: 242,243,244,245
Repeated 51 time
Molarity: 0.96M
Forward: BCAS1.F4
Reverse: BCAS1.R4

Reaction
Expected peak: 318
Associated peak: 315,316,317,318,319,320,321,322
Repeated 51 time
Molarity: 1.61M
Forward: BCAS1.F2
Reverse: BCAS1.R1

Reaction
Expected peak: 333
Associated peak: 336,337,338,339,340,341,342,343,344
Repeated 51 time
Molarity: 1.09M
Forward: BCAS1.F2
Reverse: BCAS1.R2

Reaction
Expected peak: 351
Associated peak: 359,360,361,362,363,364,365,366,367
Repeated 51 time
Molarity: 1.22M
Forward: BCAS1.F1
Reverse: BCAS1.R1

Exon
Length: 146
Transcript: BCAS1.fAug05

Exon
Length: 66
Transcript: BCAS1.fAug05

Exon
Length: 264
Transcript: BCAS1.fAug05

Exon
Length: 71
Transcript: BCAS1.fAug05

Exon
Length: 208
Transcript: BCAS1.fAug05

Intron
Length: 9408
Transcript: BCAS1.fAug05

Intron
Length: 3736
Transcript: BCAS1.fAug05

Intron
Length: 8435
Transcript: BCAS1.fAug05

Intron
Length: 3401
Transcript: BCAS1.fAug05

Reaction
Expected peak: 251
Associated peak: 258,259,260,261,262
Repeated 51 time
Molarity: 16.86M
Forward: BCAS1.F8
Reverse: BCAS1.R3

Reaction
Expected peak: 292
Associated peak: 286,287,288,289,290,291,292,293,295
Repeated 51 time
Molarity: 12.58M
Forward: BCAS1.F9
Reverse: BCAS1.R4

Reaction
Expected peak: 418
Associated peak: 439,440,441,442,443,444,445,446,447
Repeated 51 time
Molarity: 16.44M
Forward: BCAS1.F8
Reverse: BCAS1.R17

Exon
Length: 238
Transcript: BCAS1.gAug05

Exon
Length: 159
Transcript: BCAS1.gAug05

Exon
Length: 45
Transcript: BCAS1.gAug05

Exon
Length: 166
Transcript: BCAS1.gAug05

Exon
Length: 3943
Transcript: BCAS1.gAug05

Exon
Length: 246
Transcript: BCAS1.gAug05

Intron
Length: 32341
Transcript: BCAS1.gAug05

Intron
Length: 835
Transcript: BCAS1.gAug05

Intron
Length: 2334
Transcript: BCAS1.gAug05

Intron
Length: 7012
Transcript: BCAS1.gAug05

Intron
Length: 6126
Transcript: BCAS1.gAug05

Exon
Length: 385
Transcript: BCAS1.hAug05

Exon
Length: 45
Transcript: BCAS1.hAug05

Intron
Length: 1382
Transcript: BCAS1.hAug05

Exon
Length: 443
Transcript: BCAS1.shed1.aAug05

BCAS1.R4
TCTTCTGCTTGTTCATCTCGG

BCAS1.F4
TCAGTTAAAGAGGACTCAGTCCC

BCAS1.F1
AAGTCACCCACCACTTCAGC

BCAS1.R17
GATGGATACTGGGTCTGTTTGC

BCAS1.R1
CTCTGGCGGTGTGATAGTCTTT

BCAS1.F9
GACCTCAACGAAGGAGATGC

BCAS1.F8
ACCAAGAACCTCTCTGATGGC

BCAS1.F2
GACAAAGCCAACTTTACATCCC

BCAS1.R2
TCCTGTTGGTTCAGGCTCTG

BCAS1.R3
GTTCTTTGGCTTCCTGCTTG

Gene primer pair list : Primer pairs

Forward	Reverse	Occurences	View
BCAS1.F1	BCAS1.R1	51	View
BCAS1.F2	BCAS1.R1	51	View
BCAS1.F2	BCAS1.R2	51	View
BCAS1.F4	BCAS1.R4	51	View
BCAS1.F8	BCAS1.R17	51	View
BCAS1.F8	BCAS1.R3	51	View
BCAS1.F9	BCAS1.R4	51	View

current - show all

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