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Public data
LGFUS Public Data
Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: CD40
Exon
Length: 134
Transcript: CD40.aAug05
Length: 134
Transcript: CD40.aAug05
Exon
Length: 79
Transcript: CD40.aAug05
Length: 79
Transcript: CD40.aAug05
Exon
Length: 126
Transcript: CD40.aAug05
Length: 126
Transcript: CD40.aAug05
Exon
Length: 147
Transcript: CD40.aAug05
Length: 147
Transcript: CD40.aAug05
Exon
Length: 94
Transcript: CD40.aAug05
Length: 94
Transcript: CD40.aAug05
Exon
Length: 62
Transcript: CD40.aAug05
Length: 62
Transcript: CD40.aAug05
Exon
Length: 87
Transcript: CD40.aAug05
Length: 87
Transcript: CD40.aAug05
Exon
Length: 29
Transcript: CD40.aAug05
Length: 29
Transcript: CD40.aAug05
Exon
Length: 973
Transcript: CD40.aAug05
Length: 973
Transcript: CD40.aAug05
Intron
Length: 3425
Transcript: CD40.aAug05
Length: 3425
Transcript: CD40.aAug05
Intron
Length: 334
Transcript: CD40.aAug05
Length: 334
Transcript: CD40.aAug05
Intron
Length: 251
Transcript: CD40.aAug05
Length: 251
Transcript: CD40.aAug05
Intron
Length: 369
Transcript: CD40.aAug05
Length: 369
Transcript: CD40.aAug05
Intron
Length: 3420
Transcript: CD40.aAug05
Length: 3420
Transcript: CD40.aAug05
Intron
Length: 1436
Transcript: CD40.aAug05
Length: 1436
Transcript: CD40.aAug05
Intron
Length: 105
Transcript: CD40.aAug05
Length: 105
Transcript: CD40.aAug05
Intron
Length: 523
Transcript: CD40.aAug05
Length: 523
Transcript: CD40.aAug05
Reaction
Expected peak: 133
Associated peak: 142,143,144,145,146
Repeated 51 time
Molarity: 19.15M
Forward: CD40.F10
Reverse: CD40.R9
Expected peak: 133
Associated peak: 142,143,144,145,146
Repeated 51 time
Molarity: 19.15M
Forward: CD40.F10
Reverse: CD40.R9
Exon
Length: 128
Transcript: CD40.bAug05
Length: 128
Transcript: CD40.bAug05
Exon
Length: 79
Transcript: CD40.bAug05
Length: 79
Transcript: CD40.bAug05
Exon
Length: 126
Transcript: CD40.bAug05
Length: 126
Transcript: CD40.bAug05
Exon
Length: 147
Transcript: CD40.bAug05
Length: 147
Transcript: CD40.bAug05
Exon
Length: 94
Transcript: CD40.bAug05
Length: 94
Transcript: CD40.bAug05
Exon
Length: 102
Transcript: CD40.bAug05
Length: 102
Transcript: CD40.bAug05
Exon
Length: 87
Transcript: CD40.bAug05
Length: 87
Transcript: CD40.bAug05
Exon
Length: 29
Transcript: CD40.bAug05
Length: 29
Transcript: CD40.bAug05
Exon
Length: 864
Transcript: CD40.bAug05
Length: 864
Transcript: CD40.bAug05
Intron
Length: 3425
Transcript: CD40.bAug05
Length: 3425
Transcript: CD40.bAug05
Intron
Length: 334
Transcript: CD40.bAug05
Length: 334
Transcript: CD40.bAug05
Intron
Length: 251
Transcript: CD40.bAug05
Length: 251
Transcript: CD40.bAug05
Intron
Length: 369
Transcript: CD40.bAug05
Length: 369
Transcript: CD40.bAug05
Intron
Length: 3420
Transcript: CD40.bAug05
Length: 3420
Transcript: CD40.bAug05
Intron
Length: 1396
Transcript: CD40.bAug05
Length: 1396
Transcript: CD40.bAug05
Intron
Length: 105
Transcript: CD40.bAug05
Length: 105
Transcript: CD40.bAug05
Intron
Length: 523
Transcript: CD40.bAug05
Length: 523
Transcript: CD40.bAug05
Reaction
Expected peak: 133
Associated peak: 142,143,144,145,146
Repeated 51 time
Molarity: 19.15M
Forward: CD40.F10
Reverse: CD40.R9
Expected peak: 133
Associated peak: 142,143,144,145,146
Repeated 51 time
Molarity: 19.15M
Forward: CD40.F10
Reverse: CD40.R9
Exon
Length: 128
Transcript: CD40.cAug05
Length: 128
Transcript: CD40.cAug05
Exon
Length: 79
Transcript: CD40.cAug05
Length: 79
Transcript: CD40.cAug05
Exon
Length: 126
Transcript: CD40.cAug05
Length: 126
Transcript: CD40.cAug05
Exon
Length: 147
Transcript: CD40.cAug05
Length: 147
Transcript: CD40.cAug05
Exon
Length: 94
Transcript: CD40.cAug05
Length: 94
Transcript: CD40.cAug05
Exon
Length: 87
Transcript: CD40.cAug05
Length: 87
Transcript: CD40.cAug05
Exon
Length: 29
Transcript: CD40.cAug05
Length: 29
Transcript: CD40.cAug05
Exon
Length: 410
Transcript: CD40.cAug05
Length: 410
Transcript: CD40.cAug05
Intron
Length: 3425
Transcript: CD40.cAug05
Length: 3425
Transcript: CD40.cAug05
Intron
Length: 334
Transcript: CD40.cAug05
Length: 334
Transcript: CD40.cAug05
Intron
Length: 251
Transcript: CD40.cAug05
Length: 251
Transcript: CD40.cAug05
Intron
Length: 369
Transcript: CD40.cAug05
Length: 369
Transcript: CD40.cAug05
Intron
Length: 4918
Transcript: CD40.cAug05
Length: 4918
Transcript: CD40.cAug05
Intron
Length: 105
Transcript: CD40.cAug05
Length: 105
Transcript: CD40.cAug05
Intron
Length: 523
Transcript: CD40.cAug05
Length: 523
Transcript: CD40.cAug05
Reaction
Expected peak: 133
Associated peak: 142,143,144,145,146
Repeated 51 time
Molarity: 19.15M
Forward: CD40.F10
Reverse: CD40.R9
Expected peak: 133
Associated peak: 142,143,144,145,146
Repeated 51 time
Molarity: 19.15M
Forward: CD40.F10
Reverse: CD40.R9
Exon
Length: 19
Transcript: CD40.dAug05
Length: 19
Transcript: CD40.dAug05
Exon
Length: 79
Transcript: CD40.dAug05
Length: 79
Transcript: CD40.dAug05
Exon
Length: 126
Transcript: CD40.dAug05
Length: 126
Transcript: CD40.dAug05
Exon
Length: 147
Transcript: CD40.dAug05
Length: 147
Transcript: CD40.dAug05
Exon
Length: 94
Transcript: CD40.dAug05
Length: 94
Transcript: CD40.dAug05
Exon
Length: 62
Transcript: CD40.dAug05
Length: 62
Transcript: CD40.dAug05
Exon
Length: 87
Transcript: CD40.dAug05
Length: 87
Transcript: CD40.dAug05
Exon
Length: 24
Transcript: CD40.dAug05
Length: 24
Transcript: CD40.dAug05
Exon
Length: 214
Transcript: CD40.dAug05
Length: 214
Transcript: CD40.dAug05
Intron
Length: 3026
Transcript: CD40.dAug05
Length: 3026
Transcript: CD40.dAug05
Intron
Length: 334
Transcript: CD40.dAug05
Length: 334
Transcript: CD40.dAug05
Intron
Length: 251
Transcript: CD40.dAug05
Length: 251
Transcript: CD40.dAug05
Intron
Length: 369
Transcript: CD40.dAug05
Length: 369
Transcript: CD40.dAug05
Intron
Length: 3420
Transcript: CD40.dAug05
Length: 3420
Transcript: CD40.dAug05
Intron
Length: 1436
Transcript: CD40.dAug05
Length: 1436
Transcript: CD40.dAug05
Intron
Length: 110
Transcript: CD40.dAug05
Length: 110
Transcript: CD40.dAug05
Intron
Length: 523
Transcript: CD40.dAug05
Length: 523
Transcript: CD40.dAug05
Exon
Length: 123
Transcript: CD40.eAug05
Length: 123
Transcript: CD40.eAug05
Exon
Length: 79
Transcript: CD40.eAug05
Length: 79
Transcript: CD40.eAug05
Exon
Length: 126
Transcript: CD40.eAug05
Length: 126
Transcript: CD40.eAug05
Exon
Length: 147
Transcript: CD40.eAug05
Length: 147
Transcript: CD40.eAug05
Exon
Length: 62
Transcript: CD40.eAug05
Length: 62
Transcript: CD40.eAug05
Exon
Length: 87
Transcript: CD40.eAug05
Length: 87
Transcript: CD40.eAug05
Exon
Length: 29
Transcript: CD40.eAug05
Length: 29
Transcript: CD40.eAug05
Exon
Length: 225
Transcript: CD40.eAug05
Length: 225
Transcript: CD40.eAug05
Intron
Length: 3425
Transcript: CD40.eAug05
Length: 3425
Transcript: CD40.eAug05
Intron
Length: 334
Transcript: CD40.eAug05
Length: 334
Transcript: CD40.eAug05
Intron
Length: 251
Transcript: CD40.eAug05
Length: 251
Transcript: CD40.eAug05
Intron
Length: 3883
Transcript: CD40.eAug05
Length: 3883
Transcript: CD40.eAug05
Intron
Length: 1436
Transcript: CD40.eAug05
Length: 1436
Transcript: CD40.eAug05
Intron
Length: 105
Transcript: CD40.eAug05
Length: 105
Transcript: CD40.eAug05
Intron
Length: 523
Transcript: CD40.eAug05
Length: 523
Transcript: CD40.eAug05
Reaction
Expected peak: 133
Associated peak: 142,143,144,145,146
Repeated 51 time
Molarity: 19.15M
Forward: CD40.F10
Reverse: CD40.R9
Expected peak: 133
Associated peak: 142,143,144,145,146
Repeated 51 time
Molarity: 19.15M
Forward: CD40.F10
Reverse: CD40.R9
Exon
Length: 117
Transcript: CD40.fAug05
Length: 117
Transcript: CD40.fAug05
Exon
Length: 79
Transcript: CD40.fAug05
Length: 79
Transcript: CD40.fAug05
Exon
Length: 126
Transcript: CD40.fAug05
Length: 126
Transcript: CD40.fAug05
Exon
Length: 147
Transcript: CD40.fAug05
Length: 147
Transcript: CD40.fAug05
Exon
Length: 246
Transcript: CD40.fAug05
Length: 246
Transcript: CD40.fAug05
Exon
Length: 29
Transcript: CD40.fAug05
Length: 29
Transcript: CD40.fAug05
Exon
Length: 864
Transcript: CD40.fAug05
Length: 864
Transcript: CD40.fAug05
Intron
Length: 3425
Transcript: CD40.fAug05
Length: 3425
Transcript: CD40.fAug05
Intron
Length: 334
Transcript: CD40.fAug05
Length: 334
Transcript: CD40.fAug05
Intron
Length: 251
Transcript: CD40.fAug05
Length: 251
Transcript: CD40.fAug05
Intron
Length: 5222
Transcript: CD40.fAug05
Length: 5222
Transcript: CD40.fAug05
Intron
Length: 105
Transcript: CD40.fAug05
Length: 105
Transcript: CD40.fAug05
Intron
Length: 523
Transcript: CD40.fAug05
Length: 523
Transcript: CD40.fAug05
Reaction
Expected peak: 133
Associated peak: 142,143,144,145,146
Repeated 51 time
Molarity: 19.15M
Forward: CD40.F10
Reverse: CD40.R9
Expected peak: 133
Associated peak: 142,143,144,145,146
Repeated 51 time
Molarity: 19.15M
Forward: CD40.F10
Reverse: CD40.R9
Exon
Length: 29
Transcript: CD40.gAug05
Length: 29
Transcript: CD40.gAug05
Exon
Length: 126
Transcript: CD40.gAug05
Length: 126
Transcript: CD40.gAug05
Exon
Length: 147
Transcript: CD40.gAug05
Length: 147
Transcript: CD40.gAug05
Exon
Length: 94
Transcript: CD40.gAug05
Length: 94
Transcript: CD40.gAug05
Exon
Length: 62
Transcript: CD40.gAug05
Length: 62
Transcript: CD40.gAug05
Exon
Length: 83
Transcript: CD40.gAug05
Length: 83
Transcript: CD40.gAug05
Exon
Length: 99
Transcript: CD40.gAug05
Length: 99
Transcript: CD40.gAug05
Exon
Length: 191
Transcript: CD40.gAug05
Length: 191
Transcript: CD40.gAug05
Intron
Length: 334
Transcript: CD40.gAug05
Length: 334
Transcript: CD40.gAug05
Intron
Length: 251
Transcript: CD40.gAug05
Length: 251
Transcript: CD40.gAug05
Intron
Length: 369
Transcript: CD40.gAug05
Length: 369
Transcript: CD40.gAug05
Intron
Length: 3420
Transcript: CD40.gAug05
Length: 3420
Transcript: CD40.gAug05
Intron
Length: 505
Transcript: CD40.gAug05
Length: 505
Transcript: CD40.gAug05
Intron
Length: 848
Transcript: CD40.gAug05
Length: 848
Transcript: CD40.gAug05
Intron
Length: 645
Transcript: CD40.gAug05
Length: 645
Transcript: CD40.gAug05
Exon
Length: 14
Transcript: CD40.hAug05
Length: 14
Transcript: CD40.hAug05
Exon
Length: 94
Transcript: CD40.hAug05
Length: 94
Transcript: CD40.hAug05
Exon
Length: 62
Transcript: CD40.hAug05
Length: 62
Transcript: CD40.hAug05
Exon
Length: 99
Transcript: CD40.hAug05
Length: 99
Transcript: CD40.hAug05
Exon
Length: 29
Transcript: CD40.hAug05
Length: 29
Transcript: CD40.hAug05
Exon
Length: 646
Transcript: CD40.hAug05
Length: 646
Transcript: CD40.hAug05
Intron
Length: 369
Transcript: CD40.hAug05
Length: 369
Transcript: CD40.hAug05
Intron
Length: 3420
Transcript: CD40.hAug05
Length: 3420
Transcript: CD40.hAug05
Intron
Length: 1436
Transcript: CD40.hAug05
Length: 1436
Transcript: CD40.hAug05
Intron
Length: 93
Transcript: CD40.hAug05
Length: 93
Transcript: CD40.hAug05
Intron
Length: 523
Transcript: CD40.hAug05
Length: 523
Transcript: CD40.hAug05
Exon
Length: 22
Transcript: CD40.iAug05
Length: 22
Transcript: CD40.iAug05
Exon
Length: 175
Transcript: CD40.iAug05
Length: 175
Transcript: CD40.iAug05
Exon
Length: 126
Transcript: CD40.iAug05
Length: 126
Transcript: CD40.iAug05
Exon
Length: 147
Transcript: CD40.iAug05
Length: 147
Transcript: CD40.iAug05
Exon
Length: 62
Transcript: CD40.iAug05
Length: 62
Transcript: CD40.iAug05
Exon
Length: 87
Transcript: CD40.iAug05
Length: 87
Transcript: CD40.iAug05
Exon
Length: 29
Transcript: CD40.iAug05
Length: 29
Transcript: CD40.iAug05
Exon
Length: 168
Transcript: CD40.iAug05
Length: 168
Transcript: CD40.iAug05
Intron
Length: 3329
Transcript: CD40.iAug05
Length: 3329
Transcript: CD40.iAug05
Intron
Length: 334
Transcript: CD40.iAug05
Length: 334
Transcript: CD40.iAug05
Intron
Length: 251
Transcript: CD40.iAug05
Length: 251
Transcript: CD40.iAug05
Intron
Length: 3883
Transcript: CD40.iAug05
Length: 3883
Transcript: CD40.iAug05
Intron
Length: 1436
Transcript: CD40.iAug05
Length: 1436
Transcript: CD40.iAug05
Intron
Length: 105
Transcript: CD40.iAug05
Length: 105
Transcript: CD40.iAug05
Intron
Length: 523
Transcript: CD40.iAug05
Length: 523
Transcript: CD40.iAug05
Reaction
Expected peak: 229
Associated peak: 231,235,236,237,238
Repeated 51 time
Molarity: 2.72M
Forward: CD40.F10
Reverse: CD40.R9
Expected peak: 229
Associated peak: 231,235,236,237,238
Repeated 51 time
Molarity: 2.72M
Forward: CD40.F10
Reverse: CD40.R9
Exon
Length: 115
Transcript: CD40.jAug05
Length: 115
Transcript: CD40.jAug05
Exon
Length: 29
Transcript: CD40.jAug05
Length: 29
Transcript: CD40.jAug05
Exon
Length: 649
Transcript: CD40.jAug05
Length: 649
Transcript: CD40.jAug05
Intron
Length: 93
Transcript: CD40.jAug05
Length: 93
Transcript: CD40.jAug05
Intron
Length: 523
Transcript: CD40.jAug05
Length: 523
Transcript: CD40.jAug05
Exon
Length: 228
Transcript: CD40.kAug05
Length: 228
Transcript: CD40.kAug05
Exon
Length: 331
Transcript: CD40.kAug05
Length: 331
Transcript: CD40.kAug05
Intron
Length: 105
Transcript: CD40.kAug05
Length: 105
Transcript: CD40.kAug05
Exon
Length: 41
Transcript: CD40.lAug05
Length: 41
Transcript: CD40.lAug05
Exon
Length: 147
Transcript: CD40.lAug05
Length: 147
Transcript: CD40.lAug05
Exon
Length: 1086
Transcript: CD40.lAug05
Length: 1086
Transcript: CD40.lAug05
Intron
Length: 251
Transcript: CD40.lAug05
Length: 251
Transcript: CD40.lAug05
Intron
Length: 3883
Transcript: CD40.lAug05
Length: 3883
Transcript: CD40.lAug05
Exon
Length: 187
Transcript: CD40.mAug05
Length: 187
Transcript: CD40.mAug05
Exon
Length: 301
Transcript: CD40.mAug05
Length: 301
Transcript: CD40.mAug05
Intron
Length: 93
Transcript: CD40.mAug05
Length: 93
Transcript: CD40.mAug05
Exon
Length: 572
Transcript: CD40.shed1.aAug05
Length: 572
Transcript: CD40.shed1.aAug05
CD40.F10
GGGAGTCAGCAGAGGCCT
GGGAGTCAGCAGAGGCCT
CD40.R9
AGTGGGTGGTTCTGGATGG
AGTGGGTGGTTCTGGATGG