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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: PTK6
Exon
Length: 271
Transcript: PTK6.aAug05
Length: 271
Transcript: PTK6.aAug05
Exon
Length: 122
Transcript: PTK6.aAug05
Length: 122
Transcript: PTK6.aAug05
Exon
Length: 164
Transcript: PTK6.aAug05
Length: 164
Transcript: PTK6.aAug05
Exon
Length: 154
Transcript: PTK6.aAug05
Length: 154
Transcript: PTK6.aAug05
Exon
Length: 162
Transcript: PTK6.aAug05
Length: 162
Transcript: PTK6.aAug05
Exon
Length: 182
Transcript: PTK6.aAug05
Length: 182
Transcript: PTK6.aAug05
Exon
Length: 154
Transcript: PTK6.aAug05
Length: 154
Transcript: PTK6.aAug05
Exon
Length: 1895
Transcript: PTK6.aAug05
Length: 1895
Transcript: PTK6.aAug05
Intron
Length: 2025
Transcript: PTK6.aAug05
Length: 2025
Transcript: PTK6.aAug05
Intron
Length: 622
Transcript: PTK6.aAug05
Length: 622
Transcript: PTK6.aAug05
Intron
Length: 447
Transcript: PTK6.aAug05
Length: 447
Transcript: PTK6.aAug05
Intron
Length: 863
Transcript: PTK6.aAug05
Length: 863
Transcript: PTK6.aAug05
Intron
Length: 1598
Transcript: PTK6.aAug05
Length: 1598
Transcript: PTK6.aAug05
Intron
Length: 514
Transcript: PTK6.aAug05
Length: 514
Transcript: PTK6.aAug05
Intron
Length: 354
Transcript: PTK6.aAug05
Length: 354
Transcript: PTK6.aAug05
Reaction
Expected peak: 239
Associated peak: 252,253,254,255
Repeated 51 time
Molarity: 18.55M
Forward: PTK6.F9
Reverse: PTK6.R7
Expected peak: 239
Associated peak: 252,253,254,255
Repeated 51 time
Molarity: 18.55M
Forward: PTK6.F9
Reverse: PTK6.R7
Reaction
Expected peak: 254
Associated peak: 265,266,267,268,269
Repeated 51 time
Molarity: 4.18M
Forward: PTK6.F8
Reverse: PTK6.R8
Expected peak: 254
Associated peak: 265,266,267,268,269
Repeated 51 time
Molarity: 4.18M
Forward: PTK6.F8
Reverse: PTK6.R8
Exon
Length: 296
Transcript: PTK6.bAug05
Length: 296
Transcript: PTK6.bAug05
Exon
Length: 85
Transcript: PTK6.bAug05
Length: 85
Transcript: PTK6.bAug05
Exon
Length: 164
Transcript: PTK6.bAug05
Length: 164
Transcript: PTK6.bAug05
Exon
Length: 154
Transcript: PTK6.bAug05
Length: 154
Transcript: PTK6.bAug05
Exon
Length: 182
Transcript: PTK6.bAug05
Length: 182
Transcript: PTK6.bAug05
Exon
Length: 154
Transcript: PTK6.bAug05
Length: 154
Transcript: PTK6.bAug05
Exon
Length: 89
Transcript: PTK6.bAug05
Length: 89
Transcript: PTK6.bAug05
Intron
Length: 2025
Transcript: PTK6.bAug05
Length: 2025
Transcript: PTK6.bAug05
Intron
Length: 659
Transcript: PTK6.bAug05
Length: 659
Transcript: PTK6.bAug05
Intron
Length: 447
Transcript: PTK6.bAug05
Length: 447
Transcript: PTK6.bAug05
Intron
Length: 2623
Transcript: PTK6.bAug05
Length: 2623
Transcript: PTK6.bAug05
Intron
Length: 514
Transcript: PTK6.bAug05
Length: 514
Transcript: PTK6.bAug05
Intron
Length: 354
Transcript: PTK6.bAug05
Length: 354
Transcript: PTK6.bAug05
Reaction
Expected peak: 202
Associated peak: 217,218,219,220,221
Repeated 51 time
Molarity: 1.72M
Forward: PTK6.F9
Reverse: PTK6.R7
Expected peak: 202
Associated peak: 217,218,219,220,221
Repeated 51 time
Molarity: 1.72M
Forward: PTK6.F9
Reverse: PTK6.R7
Reaction
Expected peak: 217
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: PTK6.F8
Reverse: PTK6.R8
Expected peak: 217
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: PTK6.F8
Reverse: PTK6.R8
Exon
Length: 271
Transcript: PTK6.cAug05
Length: 271
Transcript: PTK6.cAug05
Exon
Length: 122
Transcript: PTK6.cAug05
Length: 122
Transcript: PTK6.cAug05
Exon
Length: 164
Transcript: PTK6.cAug05
Length: 164
Transcript: PTK6.cAug05
Exon
Length: 146
Transcript: PTK6.cAug05
Length: 146
Transcript: PTK6.cAug05
Intron
Length: 2025
Transcript: PTK6.cAug05
Length: 2025
Transcript: PTK6.cAug05
Intron
Length: 622
Transcript: PTK6.cAug05
Length: 622
Transcript: PTK6.cAug05
Intron
Length: 1477
Transcript: PTK6.cAug05
Length: 1477
Transcript: PTK6.cAug05
Reaction
Expected peak: 239
Associated peak: 252,253,254,255
Repeated 51 time
Molarity: 18.55M
Forward: PTK6.F9
Reverse: PTK6.R7
Expected peak: 239
Associated peak: 252,253,254,255
Repeated 51 time
Molarity: 18.55M
Forward: PTK6.F9
Reverse: PTK6.R7
Reaction
Expected peak: 254
Associated peak: 265,266,267,268,269
Repeated 51 time
Molarity: 4.18M
Forward: PTK6.F8
Reverse: PTK6.R8
Expected peak: 254
Associated peak: 265,266,267,268,269
Repeated 51 time
Molarity: 4.18M
Forward: PTK6.F8
Reverse: PTK6.R8
Exon
Length: 62
Transcript: PTK6.dAug05
Length: 62
Transcript: PTK6.dAug05
Exon
Length: 164
Transcript: PTK6.dAug05
Length: 164
Transcript: PTK6.dAug05
Exon
Length: 154
Transcript: PTK6.dAug05
Length: 154
Transcript: PTK6.dAug05
Exon
Length: 162
Transcript: PTK6.dAug05
Length: 162
Transcript: PTK6.dAug05
Exon
Length: 134
Transcript: PTK6.dAug05
Length: 134
Transcript: PTK6.dAug05
Intron
Length: 2769
Transcript: PTK6.dAug05
Length: 2769
Transcript: PTK6.dAug05
Intron
Length: 447
Transcript: PTK6.dAug05
Length: 447
Transcript: PTK6.dAug05
Intron
Length: 863
Transcript: PTK6.dAug05
Length: 863
Transcript: PTK6.dAug05
Intron
Length: 1598
Transcript: PTK6.dAug05
Length: 1598
Transcript: PTK6.dAug05
Reaction
Expected peak: 132
Associated peak: 145,146,147,148
Repeated 51 time
Molarity: 2.63M
Forward: PTK6.F8
Reverse: PTK6.R8
Expected peak: 132
Associated peak: 145,146,147,148
Repeated 51 time
Molarity: 2.63M
Forward: PTK6.F8
Reverse: PTK6.R8
Exon
Length: 318
Transcript: PTK6.eAug05
Length: 318
Transcript: PTK6.eAug05
Exon
Length: 122
Transcript: PTK6.eAug05
Length: 122
Transcript: PTK6.eAug05
Exon
Length: 164
Transcript: PTK6.eAug05
Length: 164
Transcript: PTK6.eAug05
Exon
Length: 154
Transcript: PTK6.eAug05
Length: 154
Transcript: PTK6.eAug05
Exon
Length: 114
Transcript: PTK6.eAug05
Length: 114
Transcript: PTK6.eAug05
Intron
Length: 1152
Transcript: PTK6.eAug05
Length: 1152
Transcript: PTK6.eAug05
Intron
Length: 622
Transcript: PTK6.eAug05
Length: 622
Transcript: PTK6.eAug05
Intron
Length: 447
Transcript: PTK6.eAug05
Length: 447
Transcript: PTK6.eAug05
Intron
Length: 863
Transcript: PTK6.eAug05
Length: 863
Transcript: PTK6.eAug05
Reaction
Expected peak: 239
Associated peak: 252,253,254,255
Repeated 51 time
Molarity: 18.55M
Forward: PTK6.F9
Reverse: PTK6.R7
Expected peak: 239
Associated peak: 252,253,254,255
Repeated 51 time
Molarity: 18.55M
Forward: PTK6.F9
Reverse: PTK6.R7
Exon
Length: 848
Transcript: PTK6.fAug05
Length: 848
Transcript: PTK6.fAug05
Exon
Length: 182
Transcript: PTK6.fAug05
Length: 182
Transcript: PTK6.fAug05
Exon
Length: 1476
Transcript: PTK6.fAug05
Length: 1476
Transcript: PTK6.fAug05
Intron
Length: 1598
Transcript: PTK6.fAug05
Length: 1598
Transcript: PTK6.fAug05
Intron
Length: 514
Transcript: PTK6.fAug05
Length: 514
Transcript: PTK6.fAug05
Exon
Length: 164
Transcript: PTK6.gAug05
Length: 164
Transcript: PTK6.gAug05
Exon
Length: 326
Transcript: PTK6.gAug05
Length: 326
Transcript: PTK6.gAug05
Intron
Length: 447
Transcript: PTK6.gAug05
Length: 447
Transcript: PTK6.gAug05
Exon
Length: 151
Transcript: PTK6.hAug05
Length: 151
Transcript: PTK6.hAug05
Exon
Length: 613
Transcript: PTK6.hAug05
Length: 613
Transcript: PTK6.hAug05
Intron
Length: 2633
Transcript: PTK6.hAug05
Length: 2633
Transcript: PTK6.hAug05
PTK6.F9
GTGGTTCTTTGGCTGCATCT
GTGGTTCTTTGGCTGCATCT
PTK6.R7
CCCTGTGGTAGTTCACAAGCTC
CCCTGTGGTAGTTCACAAGCTC
PTK6.F8
TATGTGCCCCACAACTACCTG
TATGTGCCCCACAACTACCTG
PTK6.R8
AAGGACACCGCCTCGTTCAG
AAGGACACCGCCTCGTTCAG