2. Breast Validation Screen - Rnomics 📊 Palace

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Home Public data LGFUS Public Data Identification of alternative splicing markers for breast cancer 2. Breast Validation Screen

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https://rnomics.med.usherbrooke.ca/palace?purl=/data/related/3/gene/505959

2. Breast Validation Screen ⚙

Transcript map : APP

Exon
Length: 251
Transcript: APP.aAug05

Exon
Length: 168
Transcript: APP.aAug05

Exon
Length: 130
Transcript: APP.aAug05

Exon
Length: 113
Transcript: APP.aAug05

Exon
Length: 194
Transcript: APP.aAug05

Exon
Length: 203
Transcript: APP.aAug05

Exon
Length: 168
Transcript: APP.aAug05

Exon
Length: 57
Transcript: APP.aAug05

Exon
Length: 134
Transcript: APP.aAug05

Exon
Length: 75
Transcript: APP.aAug05

Exon
Length: 159
Transcript: APP.aAug05

Exon
Length: 129
Transcript: APP.aAug05

Exon
Length: 100
Transcript: APP.aAug05

Exon
Length: 222
Transcript: APP.aAug05

Exon
Length: 54
Transcript: APP.aAug05

Exon
Length: 101
Transcript: APP.aAug05

Exon
Length: 147
Transcript: APP.aAug05

Exon
Length: 1221
Transcript: APP.aAug05

Intron
Length: 58418
Transcript: APP.aAug05

Intron
Length: 21907
Transcript: APP.aAug05

Intron
Length: 36594
Transcript: APP.aAug05

Intron
Length: 2042
Transcript: APP.aAug05

Intron
Length: 28957
Transcript: APP.aAug05

Intron
Length: 21658
Transcript: APP.aAug05

Intron
Length: 2598
Transcript: APP.aAug05

Intron
Length: 14884
Transcript: APP.aAug05

Intron
Length: 6315
Transcript: APP.aAug05

Intron
Length: 725
Transcript: APP.aAug05

Intron
Length: 19313
Transcript: APP.aAug05

Intron
Length: 937
Transcript: APP.aAug05

Intron
Length: 42629
Transcript: APP.aAug05

Intron
Length: 6663
Transcript: APP.aAug05

Intron
Length: 7350
Transcript: APP.aAug05

Intron
Length: 5704
Transcript: APP.aAug05

Intron
Length: 9951
Transcript: APP.aAug05

Reaction
Expected peak: 192
Associated peak: 206,207,208,209,217
Repeated 51 time
Molarity: 17.62M
Forward: APP.F1
Reverse: APP.R1

Reaction
Expected peak: 210
Associated peak: 226,227,228,229,230,242,245,247
Repeated 51 time
Molarity: 13.81M
Forward: APP.F2
Reverse: APP.R2

Reaction
Expected peak: 343
Associated peak: 369,370,371,372,373,374,375,376,378,386,391,394
Repeated 51 time
Molarity: 11.64M
Forward: APP.F9
Reverse: APP.R1

Reaction
Expected peak: 365
Associated peak: 347,395,397,398,399,400,401,402,420
Repeated 51 time
Molarity: 8.95M
Forward: APP.F7
Reverse: APP.R2

Exon
Length: 257
Transcript: APP.bAug05

Exon
Length: 168
Transcript: APP.bAug05

Exon
Length: 130
Transcript: APP.bAug05

Exon
Length: 113
Transcript: APP.bAug05

Exon
Length: 194
Transcript: APP.bAug05

Exon
Length: 203
Transcript: APP.bAug05

Exon
Length: 168
Transcript: APP.bAug05

Exon
Length: 134
Transcript: APP.bAug05

Exon
Length: 75
Transcript: APP.bAug05

Exon
Length: 159
Transcript: APP.bAug05

Exon
Length: 129
Transcript: APP.bAug05

Exon
Length: 100
Transcript: APP.bAug05

Exon
Length: 222
Transcript: APP.bAug05

Exon
Length: 54
Transcript: APP.bAug05

Exon
Length: 101
Transcript: APP.bAug05

Exon
Length: 147
Transcript: APP.bAug05

Exon
Length: 1226
Transcript: APP.bAug05

Intron
Length: 58418
Transcript: APP.bAug05

Intron
Length: 21907
Transcript: APP.bAug05

Intron
Length: 36594
Transcript: APP.bAug05

Intron
Length: 2042
Transcript: APP.bAug05

Intron
Length: 28957
Transcript: APP.bAug05

Intron
Length: 21658
Transcript: APP.bAug05

Intron
Length: 17539
Transcript: APP.bAug05

Intron
Length: 6315
Transcript: APP.bAug05

Intron
Length: 725
Transcript: APP.bAug05

Intron
Length: 19313
Transcript: APP.bAug05

Intron
Length: 937
Transcript: APP.bAug05

Intron
Length: 42629
Transcript: APP.bAug05

Intron
Length: 6663
Transcript: APP.bAug05

Intron
Length: 7350
Transcript: APP.bAug05

Intron
Length: 5704
Transcript: APP.bAug05

Intron
Length: 9951
Transcript: APP.bAug05

Reaction
Expected peak: 135
Associated peak: 148,149,150,151,155,156
Repeated 51 time
Molarity: 33.75M
Forward: APP.F1
Reverse: APP.R1

Reaction
Expected peak: 153
Associated peak: 170,171,172,173,184
Repeated 51 time
Molarity: 21.32M
Forward: APP.F2
Reverse: APP.R2

Reaction
Expected peak: 286
Associated peak: 296,297,298,299,300,303,306,309
Repeated 51 time
Molarity: 18.52M
Forward: APP.F9
Reverse: APP.R1

Reaction
Expected peak: 308
Associated peak: 322,324,326,327,328,329,330,331
Repeated 51 time
Molarity: 14.28M
Forward: APP.F7
Reverse: APP.R2

Exon
Length: 251
Transcript: APP.cAug05

Exon
Length: 168
Transcript: APP.cAug05

Exon
Length: 130
Transcript: APP.cAug05

Exon
Length: 113
Transcript: APP.cAug05

Exon
Length: 194
Transcript: APP.cAug05

Exon
Length: 203
Transcript: APP.cAug05

Exon
Length: 134
Transcript: APP.cAug05

Exon
Length: 75
Transcript: APP.cAug05

Exon
Length: 159
Transcript: APP.cAug05

Exon
Length: 129
Transcript: APP.cAug05

Exon
Length: 100
Transcript: APP.cAug05

Exon
Length: 222
Transcript: APP.cAug05

Exon
Length: 54
Transcript: APP.cAug05

Exon
Length: 101
Transcript: APP.cAug05

Exon
Length: 147
Transcript: APP.cAug05

Exon
Length: 1221
Transcript: APP.cAug05

Intron
Length: 58418
Transcript: APP.cAug05

Intron
Length: 21907
Transcript: APP.cAug05

Intron
Length: 36594
Transcript: APP.cAug05

Intron
Length: 2042
Transcript: APP.cAug05

Intron
Length: 28957
Transcript: APP.cAug05

Intron
Length: 39365
Transcript: APP.cAug05

Intron
Length: 6315
Transcript: APP.cAug05

Intron
Length: 725
Transcript: APP.cAug05

Intron
Length: 19313
Transcript: APP.cAug05

Intron
Length: 937
Transcript: APP.cAug05

Intron
Length: 42629
Transcript: APP.cAug05

Intron
Length: 6663
Transcript: APP.cAug05

Intron
Length: 7350
Transcript: APP.cAug05

Intron
Length: 5704
Transcript: APP.cAug05

Intron
Length: 9951
Transcript: APP.cAug05

Reaction
Expected peak: 118
Associated peak: 128,129,130,131,132,133,134
Repeated 51 time
Molarity: 5.21M
Forward: APP.F9
Reverse: APP.R1

Reaction
Expected peak: 140
Associated peak: 151,152,153,154,155,162
Repeated 51 time
Molarity: 4.70M
Forward: APP.F7
Reverse: APP.R2

Exon
Length: 207
Transcript: APP.dAug05

Exon
Length: 130
Transcript: APP.dAug05

Exon
Length: 113
Transcript: APP.dAug05

Exon
Length: 194
Transcript: APP.dAug05

Exon
Length: 203
Transcript: APP.dAug05

Exon
Length: 134
Transcript: APP.dAug05

Exon
Length: 75
Transcript: APP.dAug05

Exon
Length: 159
Transcript: APP.dAug05

Exon
Length: 129
Transcript: APP.dAug05

Exon
Length: 100
Transcript: APP.dAug05

Exon
Length: 222
Transcript: APP.dAug05

Exon
Length: 54
Transcript: APP.dAug05

Exon
Length: 101
Transcript: APP.dAug05

Exon
Length: 147
Transcript: APP.dAug05

Exon
Length: 966
Transcript: APP.dAug05

Intron
Length: 80493
Transcript: APP.dAug05

Intron
Length: 36594
Transcript: APP.dAug05

Intron
Length: 2042
Transcript: APP.dAug05

Intron
Length: 28957
Transcript: APP.dAug05

Intron
Length: 39365
Transcript: APP.dAug05

Intron
Length: 6315
Transcript: APP.dAug05

Intron
Length: 725
Transcript: APP.dAug05

Intron
Length: 19313
Transcript: APP.dAug05

Intron
Length: 937
Transcript: APP.dAug05

Intron
Length: 42629
Transcript: APP.dAug05

Intron
Length: 6663
Transcript: APP.dAug05

Intron
Length: 7350
Transcript: APP.dAug05

Intron
Length: 5704
Transcript: APP.dAug05

Intron
Length: 9951
Transcript: APP.dAug05

Reaction
Expected peak: 118
Associated peak: 128,129,130,131,132,133,134
Repeated 51 time
Molarity: 5.21M
Forward: APP.F9
Reverse: APP.R1

Reaction
Expected peak: 140
Associated peak: 151,152,153,154,155,162
Repeated 51 time
Molarity: 4.70M
Forward: APP.F7
Reverse: APP.R2

Exon
Length: 33
Transcript: APP.eAug05

Exon
Length: 203
Transcript: APP.eAug05

Exon
Length: 57
Transcript: APP.eAug05

Exon
Length: 134
Transcript: APP.eAug05

Exon
Length: 75
Transcript: APP.eAug05

Exon
Length: 159
Transcript: APP.eAug05

Exon
Length: 129
Transcript: APP.eAug05

Exon
Length: 100
Transcript: APP.eAug05

Exon
Length: 222
Transcript: APP.eAug05

Exon
Length: 101
Transcript: APP.eAug05

Exon
Length: 147
Transcript: APP.eAug05

Exon
Length: 136
Transcript: APP.eAug05

Exon
Length: 184
Transcript: APP.eAug05

Intron
Length: 28957
Transcript: APP.eAug05

Intron
Length: 24424
Transcript: APP.eAug05

Intron
Length: 14884
Transcript: APP.eAug05

Intron
Length: 6315
Transcript: APP.eAug05

Intron
Length: 725
Transcript: APP.eAug05

Intron
Length: 19313
Transcript: APP.eAug05

Intron
Length: 937
Transcript: APP.eAug05

Intron
Length: 42629
Transcript: APP.eAug05

Intron
Length: 14067
Transcript: APP.eAug05

Intron
Length: 5704
Transcript: APP.eAug05

Intron
Length: 9951
Transcript: APP.eAug05

Intron
Length: 54
Transcript: APP.eAug05

Reaction
Expected peak: 175
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: APP.F9
Reverse: APP.R1

Reaction
Expected peak: 197
Associated peak: None
Repeated 51 time
Molarity: 0.00M
Forward: APP.F7
Reverse: APP.R2

Exon
Length: 118
Transcript: APP.fAug05

Exon
Length: 113
Transcript: APP.fAug05

Exon
Length: 194
Transcript: APP.fAug05

Exon
Length: 203
Transcript: APP.fAug05

Exon
Length: 168
Transcript: APP.fAug05

Exon
Length: 134
Transcript: APP.fAug05

Exon
Length: 75
Transcript: APP.fAug05

Exon
Length: 159
Transcript: APP.fAug05

Exon
Length: 129
Transcript: APP.fAug05

Exon
Length: 100
Transcript: APP.fAug05

Exon
Length: 544
Transcript: APP.fAug05

Intron
Length: 36594
Transcript: APP.fAug05

Intron
Length: 2042
Transcript: APP.fAug05

Intron
Length: 28957
Transcript: APP.fAug05

Intron
Length: 21658
Transcript: APP.fAug05

Intron
Length: 17539
Transcript: APP.fAug05

Intron
Length: 6315
Transcript: APP.fAug05

Intron
Length: 725
Transcript: APP.fAug05

Intron
Length: 19313
Transcript: APP.fAug05

Intron
Length: 937
Transcript: APP.fAug05

Intron
Length: 8613
Transcript: APP.fAug05

Reaction
Expected peak: 135
Associated peak: 148,149,150,151,155,156
Repeated 51 time
Molarity: 33.75M
Forward: APP.F1
Reverse: APP.R1

Reaction
Expected peak: 153
Associated peak: 170,171,172,173,184
Repeated 51 time
Molarity: 21.32M
Forward: APP.F2
Reverse: APP.R2

Reaction
Expected peak: 286
Associated peak: 296,297,298,299,300,303,306,309
Repeated 51 time
Molarity: 18.52M
Forward: APP.F9
Reverse: APP.R1

Reaction
Expected peak: 308
Associated peak: 322,324,326,327,328,329,330,331
Repeated 51 time
Molarity: 14.28M
Forward: APP.F7
Reverse: APP.R2

Exon
Length: 183
Transcript: APP.gAug05

Exon
Length: 168
Transcript: APP.gAug05

Exon
Length: 130
Transcript: APP.gAug05

Exon
Length: 113
Transcript: APP.gAug05

Exon
Length: 194
Transcript: APP.gAug05

Exon
Length: 203
Transcript: APP.gAug05

Exon
Length: 305
Transcript: APP.gAug05

Intron
Length: 58418
Transcript: APP.gAug05

Intron
Length: 21907
Transcript: APP.gAug05

Intron
Length: 36594
Transcript: APP.gAug05

Intron
Length: 2042
Transcript: APP.gAug05

Intron
Length: 28957
Transcript: APP.gAug05

Intron
Length: 11927
Transcript: APP.gAug05

Exon
Length: 105
Transcript: APP.hAug05

Exon
Length: 129
Transcript: APP.hAug05

Exon
Length: 100
Transcript: APP.hAug05

Exon
Length: 222
Transcript: APP.hAug05

Exon
Length: 54
Transcript: APP.hAug05

Exon
Length: 101
Transcript: APP.hAug05

Exon
Length: 147
Transcript: APP.hAug05

Exon
Length: 136
Transcript: APP.hAug05

Exon
Length: 27
Transcript: APP.hAug05

Intron
Length: 14637
Transcript: APP.hAug05

Intron
Length: 937
Transcript: APP.hAug05

Intron
Length: 42629
Transcript: APP.hAug05

Intron
Length: 6663
Transcript: APP.hAug05

Intron
Length: 7350
Transcript: APP.hAug05

Intron
Length: 5704
Transcript: APP.hAug05

Intron
Length: 9951
Transcript: APP.hAug05

Intron
Length: 54
Transcript: APP.hAug05

Exon
Length: 203
Transcript: APP.iAug05

Exon
Length: 168
Transcript: APP.iAug05

Exon
Length: 229
Transcript: APP.iAug05

Intron
Length: 21658
Transcript: APP.iAug05

Intron
Length: 2598
Transcript: APP.iAug05

Exon
Length: 112
Transcript: APP.jAug05

Exon
Length: 57
Transcript: APP.jAug05

Exon
Length: 134
Transcript: APP.jAug05

Exon
Length: 75
Transcript: APP.jAug05

Exon
Length: 10
Transcript: APP.jAug05

Intron
Length: 2598
Transcript: APP.jAug05

Intron
Length: 14884
Transcript: APP.jAug05

Intron
Length: 6315
Transcript: APP.jAug05

Intron
Length: 5234
Transcript: APP.jAug05

Reaction
Expected peak: 192
Associated peak: 206,207,208,209,217
Repeated 51 time
Molarity: 17.62M
Forward: APP.F1
Reverse: APP.R1

Reaction
Expected peak: 210
Associated peak: 226,227,228,229,230,242,245,247
Repeated 51 time
Molarity: 13.81M
Forward: APP.F2
Reverse: APP.R2

Exon
Length: 222
Transcript: APP.kAug05

Exon
Length: 168
Transcript: APP.kAug05

Exon
Length: 548
Transcript: APP.kAug05

Intron
Length: 57072
Transcript: APP.kAug05

Intron
Length: 21907
Transcript: APP.kAug05

Exon
Length: 406
Transcript: APP.lAug05

Exon
Length: 147
Transcript: APP.lAug05

Exon
Length: 235
Transcript: APP.lAug05

Intron
Length: 5704
Transcript: APP.lAug05

Intron
Length: 9951
Transcript: APP.lAug05

Exon
Length: 57
Transcript: APP.mAug05

Exon
Length: 183
Transcript: APP.mAug05

Exon
Length: 180
Transcript: APP.mAug05

Intron
Length: 2042
Transcript: APP.mAug05

Intron
Length: 170285
Transcript: APP.mAug05

Exon
Length: 129
Transcript: APP.nAug05

Exon
Length: 117
Transcript: APP.nAug05

Exon
Length: 277
Transcript: APP.nAug05

Intron
Length: 34440
Transcript: APP.nAug05

Intron
Length: 13025
Transcript: APP.nAug05

Exon
Length: 217
Transcript: APP.shed1.aAug05

Exon
Length: 389
Transcript: APP.shed2.aAug05

APP.F1
GCAACCGGAACAACTTTGAC

APP.R2
CGAGATACTTGTCAACGGCA

APP.F7
TGAGGAACCCTACGAAGAAGC

APP.F9
ACCACCACCACCACAGAGTC

APP.F2
ATGTGACTGAAGGGAAGTGTGC

APP.R1
GGGCATGTTCATTCTCATCC

Gene primer pair list : Primer pairs

Forward	Reverse	Occurences	View
APP.F1	APP.R1	51	View
APP.F2	APP.R2	51	View
APP.F7	APP.R2	51	View
APP.F9	APP.R1	51	View

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