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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
Assay reliability
QPsi proof of principle
qPCR HKGs normalization
QPCR Primer Pair List
: primer pair list
| Gene | Forward | Reverse | |
|---|---|---|---|
| VIEW | ABI1 | ABI1_cass_L_2_f | ABI1_cass_L_5_r |
| VIEW | ABI1 | ABI1_cass_S_2_f | ABI1.S.R1 |
| VIEW | ADD3 | ADD3_cass_L_1_f | ADD3_cass_S_r |
| VIEW | ADD3 | ADD3_cass_S_f | ADD3_cass_S_1_r |
| VIEW | ARHGEF11 | ARHGEF11_cass_L_1_f | ARHGEF11_cass_L_2_r |
| VIEW | ARHGEF11 | ARHGEF11_cass_S_2_f | ARHGEF11_cass_S_1_r |
| VIEW | ATP11C | ATP11C_cass_L_1_f | ATP11C_cass_L_2_r |
| VIEW | ATP11C | ATP11C_cass_S_2_f | ATP11C_cass_S_2_r |
| VIEW | BRCC3 | BRCC3_cass_L_f | BRCC3_cass_L_r |
| VIEW | BRCC3 | BRCC3_cass_S_f | BRCC3_cass_S_1_r |
| VIEW | C14orf173 | C14orf173_cass_L_f | C14orf173_cass_L_r |
| VIEW | C14orf173 | C14orf173_cass_S_f | C14orf173_cass_S_r |
| VIEW | CAMKK2 | CAMKK2_cass_L_2_f | CAMKK2_cass_L_4_r |
| VIEW | CAMKK2 | CAMKK2_cass_S_3_f | CAMKK2_cass_S_3_r |
| VIEW | CD46 | CD46_cass_L_f | CD46_cass_L_r |
| VIEW | CD46 | CD46_cass_S_f | CD46_cass_S_1_r |
| VIEW | CLSTN1 | CLSTN1_cass_L_2_f | CLSTN1_cass_S_2_r |
| VIEW | CLSTN1 | CLSTN1_cass_S_f | CLSTN1_cass_S_3_r |
| VIEW | CSNK1G3 | CSNK1G3_cass_L_5_f | CSNK1G3_cass_L_1_r |
| VIEW | CSNK1G3 | CSNK1G3_cass_S_5_f | CSNK1G3_cass_S_2_r |
QPCR Relative Expression Quantification (FFA)
: Expression Summary Tables (XLS)
QPCR Relative Expression Quantification (FFPEA)
: Expression Summary Tables (XLS)
QPCR Primer Pair List
: event list
| Short | Long | |
|---|---|---|
| VIEW | ABI1_cass_S_2_f ABI1.S.R1 | ABI1_cass_L_2_f ABI1_cass_L_5_r |
| VIEW | ADD3_cass_S_f ADD3_cass_S_1_r | ADD3_cass_L_1_f ADD3_cass_S_r |
| VIEW | ARHGEF11_cass_S_2_f ARHGEF11_cass_S_1_r | ARHGEF11_cass_L_1_f ARHGEF11_cass_L_2_r |
| VIEW | ATP11C_cass_S_2_f ATP11C_cass_S_2_r | ATP11C_cass_L_1_f ATP11C_cass_L_2_r |
| VIEW | BRCC3_cass_S_f BRCC3_cass_S_1_r | BRCC3_cass_L_f BRCC3_cass_L_r |
| VIEW | C14orf173_cass_S_f C14orf173_cass_S_r | C14orf173_cass_L_f C14orf173_cass_L_r |
| VIEW | CAMKK2_cass_S_3_f CAMKK2_cass_S_3_r | CAMKK2_cass_L_2_f CAMKK2_cass_L_4_r |
| VIEW | CD46_cass_S_f CD46_cass_S_1_r | CD46_cass_L_f CD46_cass_L_r |
| VIEW | CLSTN1_cass_S_f CLSTN1_cass_S_3_r | CLSTN1_cass_L_2_f CLSTN1_cass_S_2_r |
| VIEW | CSNK1G3_cass_S_5_f CSNK1G3_cass_S_2_r | CSNK1G3_cass_L_5_f CSNK1G3_cass_L_1_r |
| VIEW | OSBPL9_cass_S_4_f OSBPL9_cass_S_3_r | OSBPL9_cass_L_3_f OSBPL9_cass_L_4_r |
| VIEW | STIM1_cass_S_1_f STIM1_cass_S_3_r | STIM1_cass_S_1_f STIM1_rx_L_r |
current - show all
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QPCR QPSI (FFA)
QPCR QPSI (FFPEA)
QPCR Relative Expression Quantification (FFA)
: NF pairwise rate map
QPCR Relative Expression Quantification (FFPEA)
: NF pairwise rate map
QPCR Relative Expression Quantification (FFA)
: NF Histogram
QPCR Relative Expression Quantification (FFPEA)
: NF Histogram
QPCR Relative Expression Quantification (FFA)
: Reports
Comments on the experiments
QPCR Relative Expression Quantification (FFPEA)
: Reports
Comments on the experiments
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