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LGFUS Public Data
Cancer-associated regulation of alternative splicing
06. Association Screen: Breast
Documentation
: Association Screens
This page contains links to the data for the breast association screen using the active breast ASEs and 20 normal breast samples and 26 breast cancer samples. These data can be viewed in several different portals that each ultimately link to the raw data.
- Histograms. This links to the distributions of splicing outcomes for the tissues from most to least significant discriminator
- Heatmap. This show the raw psi values for the whole association screen.
- Gene list. Shows data by individual ASE
- Raw data spreadsheets
Histograms for Group Comparison
PSI Values Heatmap
Gene list
: Gene list
| Gene | Reactions | Links |
|---|---|---|
| ABCB4 | 104 | NCBIGene 36.2 ABCB4 |
| ABCB9 | 104 | NCBIGene 36.2 ABCB9 |
| ABCC11 | 52 | NCBIGene 36.2 ABCC11 |
| ABCD4 | 52 | NCBIGene 36.2 ABCD4 |
| ABI1 | 52 | NCBIGene 36.2 ABI1 |
| ABTB1 | 52 | NCBIGene 36.2 ABTB1 |
| ACLY | 52 | NCBIGene 36.2 ACLY |
| ACOT9 | 52 | NCBIGene 36.2 ACOT9 |
| ACRV1 | 52 | NCBIGene 36.2 ACRV1 |
| ACSL3 | 52 | NCBIGene 36.2 ACSL3 |
| ACTR3B | 52 | NCBIGene 36.2 ACTR3B |
| ADAMTSL1 | 52 | NCBIGene 36.2 ADAMTSL1 |
| ADARB1 | 104 | NCBIGene 36.2 ADARB1 |
| ADD3 | 52 | NCBIGene 36.2 ADD3 |
| ADNP | 52 | NCBIGene 36.2 ADNP |
| AGC1 | 104 | NCBIGene 36.2 AGC1 |
| AGTRAP | 52 | NCBIGene 36.2 AGTRAP |
| AKAP2 | 51 | NCBIGene 36.2 PALM2, NCBIGene 36.2 PALM2-AKAP2, NCBIGene 36.2 AKAP2 |
| AKAP7 | 52 | NCBIGene 36.2 AKAP7 |
| AKR1A1 | 52 | NCBIGene 36.2 AKR1A1 |
Computation of PSI values
: Access to Raw Data File
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