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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
Tissu quality control molecular markers (related to Fig. 1B and Table S1)
LCM discovery and validation sample set
QPCR Primer Pair List
: primer pair list
| Gene | Forward | Reverse | |
|---|---|---|---|
| VIEW | AHNAK | AHNAK_G_f | AHNAK_G_r |
| VIEW | AKT1 | AKT1_G_f | AKT1_global_r |
| VIEW | BMP1 | BMP1_G_1_f | BMP1_G_1_r |
| VIEW | BMP7 | BMP7_G_f | BMP7_G_r |
| VIEW | C9orf30/TMEFF1 | TMEFF1_G_2_f | TMEFF1_G_1_r |
| VIEW | CAMK2N1 | CAMK2N1_G_f | CAMK2N1_G_r |
| VIEW | CDH1 | CDH1_G_f | CDH1_G_r |
| VIEW | CDH2 | CDH2_G_f | CDH2_G_r |
| VIEW | COL1A2 | COL1A2_G_f | COL1A2_G_r |
| VIEW | COL3A1 | COL3A1_G_1_f | COL3A1_G_r |
| VIEW | COL5A2 | COL5A2_G_f | COL5A2_G_r |
| VIEW | CTNNB1 | CTNNB1_G_f | CTNNB1_G_r |
| VIEW | DSC2 | DSC2_G_f | DSC2_G_r |
| VIEW | DSP | DSP_G_1_f | DSP_G_r |
| VIEW | ERBB3 | ERBB3_G_f | ERBB3_G_r |
| VIEW | ESR1 | ESR1_G_f | ESR1_G_1_r |
| VIEW | F11R | F11R_G_f | F11R_G_r |
| VIEW | FN1 | FN1_G_f | FN1_G_r |
| VIEW | FN1 | FN1_L_f | FN1_cass_L_2_r |
| VIEW | FN1 | FN1_cass_S_5_f | FN1_cass_S_1_r |
QPCR Relative Expression Quantification
: Summary
Expression Table
| ID | Name |
|---|---|
| 1 | FT E |
| 2 | OVN S |
| 3 | OVC E |
| 4 | OVC S |
current - show all
Page 1 of 1, records 1 to 4 of 4
| Primer Pair | S1 | p1 | S2 | p2 | S3 | p3 | S4 | p4 |
|---|---|---|---|---|---|---|---|---|
| AHNAK_G_f AHNAK_G_r | 0.642 | 1.000 | 0.232 | 0.346 | ||||
| AKT1_G_f AKT1_global_r | 0.771 | 0.872 | 1.000 | 0.914 | ||||
| BMP1_G_1_f BMP1_G_1_r | 0.249 | 1.000 | 0.269 | 0.743 | ||||
| BMP7_G_f BMP7_G_r | 0.282 | 1.000 | 0.618 | 0.361 | ||||
| CAMK2N1_G_f CAMK2N1_G_r | 0.116 | 1.000 | 0.215 | 0.680 | ||||
| CDH1_G_f CDH1_G_r | 1.000 | 0.495 | 0.696 | 0.493 | ||||
| CDH2_G_f CDH2_G_r | 0.236 | 0.097 | 1.000 | 0.524 | ||||
| COL1A2_G_f COL1A2_G_r | 0.029 | 0.136 | 0.045 | 1.000 | ||||
| COL3A1_G_1_f COL3A1_G_r | 0.028 | 0.445 | 0.196 | 1.000 | ||||
| COL5A2_G_f COL5A2_G_r | 0.080 | 0.208 | 0.063 | 1.000 | ||||
| CTNNB1_G_f CTNNB1_G_r | 0.544 | 0.749 | 0.558 | 1.000 | ||||
| DSC2_G_f DSC2_G_r | 0.610 | 1.000 | 0.948 | 0.443 | ||||
| DSP_G_1_f DSP_G_r | 0.559 | 0.352 | 1.000 | 0.719 | ||||
| ERBB3_G_f ERBB3_G_r | 1.000 | 0.850 | 0.727 | 0.455 | ||||
| ESR1_G_f ESR1_G_1_r | 0.656 | 1.000 | 0.190 | 0.137 | ||||
| F11R_G_f F11R_G_r | 0.940 | 0.756 | 1.000 | 0.727 | ||||
| FN1_G_f FN1_G_r | 0.009 | 0.088 | 0.054 | 1.000 | ||||
| FN1_L_f FN1_cass_L_2_r | 0.007 | 0.049 | 0.141 | 1.000 | ||||
| FN1_cass_S_5_f FN1_cass_S_1_r | 0.018 | 0.072 | 0.037 | 1.000 | ||||
| GNG11_G_f GNG11_G_r | 0.528 | 1.000 | 0.081 | 0.654 |
QPCR Reference Gene Page
: .
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