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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
QKI responsiveness of 382 ACE
Transcript map
: ANKRD16 Brosseau_SKOV_LF
Exon
Length: 343
Transcript: NM_001009941
Length: 343
Transcript: NM_001009941
Exon
Length: 221
Transcript: NM_001009941
Length: 221
Transcript: NM_001009941
Exon
Length: 43
Transcript: NM_001009941
Length: 43
Transcript: NM_001009941
Exon
Length: 109
Transcript: NM_001009941
Length: 109
Transcript: NM_001009941
Exon
Length: 162
Transcript: NM_001009941
Length: 162
Transcript: NM_001009941
Exon
Length: 79
Transcript: NM_001009941
Length: 79
Transcript: NM_001009941
Exon
Length: 199
Transcript: NM_001009941
Length: 199
Transcript: NM_001009941
Intron
Length: 973
Transcript: NM_001009941
Length: 973
Transcript: NM_001009941
Intron
Length: 2081
Transcript: NM_001009941
Length: 2081
Transcript: NM_001009941
Intron
Length: 1645
Transcript: NM_001009941
Length: 1645
Transcript: NM_001009941
Intron
Length: 801
Transcript: NM_001009941
Length: 801
Transcript: NM_001009941
Intron
Length: 2629
Transcript: NM_001009941
Length: 2629
Transcript: NM_001009941
Intron
Length: 2010
Transcript: NM_001009941
Length: 2010
Transcript: NM_001009941
Reaction
Expected peak: 215
21.4M
refseq_ANKRD16.F1
refseq_ANKRD16.R1
Expected peak: 215
21.4M
refseq_ANKRD16.F1
refseq_ANKRD16.R1
Exon
Length: 343
Transcript: NM_001009942
Length: 343
Transcript: NM_001009942
Exon
Length: 221
Transcript: NM_001009942
Length: 221
Transcript: NM_001009942
Exon
Length: 43
Transcript: NM_001009942
Length: 43
Transcript: NM_001009942
Exon
Length: 109
Transcript: NM_001009942
Length: 109
Transcript: NM_001009942
Exon
Length: 59
Transcript: NM_001009942
Length: 59
Transcript: NM_001009942
Exon
Length: 77
Transcript: NM_001009942
Length: 77
Transcript: NM_001009942
Exon
Length: 199
Transcript: NM_001009942
Length: 199
Transcript: NM_001009942
Intron
Length: 973
Transcript: NM_001009942
Length: 973
Transcript: NM_001009942
Intron
Length: 2081
Transcript: NM_001009942
Length: 2081
Transcript: NM_001009942
Intron
Length: 1645
Transcript: NM_001009942
Length: 1645
Transcript: NM_001009942
Intron
Length: 801
Transcript: NM_001009942
Length: 801
Transcript: NM_001009942
Intron
Length: 2734
Transcript: NM_001009942
Length: 2734
Transcript: NM_001009942
Intron
Length: 2010
Transcript: NM_001009942
Length: 2010
Transcript: NM_001009942
Exon
Length: 343
Transcript: NM_001009943
Length: 343
Transcript: NM_001009943
Exon
Length: 221
Transcript: NM_001009943
Length: 221
Transcript: NM_001009943
Exon
Length: 43
Transcript: NM_001009943
Length: 43
Transcript: NM_001009943
Exon
Length: 109
Transcript: NM_001009943
Length: 109
Transcript: NM_001009943
Exon
Length: 162
Transcript: NM_001009943
Length: 162
Transcript: NM_001009943
Exon
Length: 199
Transcript: NM_001009943
Length: 199
Transcript: NM_001009943
Intron
Length: 973
Transcript: NM_001009943
Length: 973
Transcript: NM_001009943
Intron
Length: 2081
Transcript: NM_001009943
Length: 2081
Transcript: NM_001009943
Intron
Length: 1645
Transcript: NM_001009943
Length: 1645
Transcript: NM_001009943
Intron
Length: 801
Transcript: NM_001009943
Length: 801
Transcript: NM_001009943
Intron
Length: 4718
Transcript: NM_001009943
Length: 4718
Transcript: NM_001009943
Reaction
Expected peak: 136
8.8M
refseq_ANKRD16.F1
refseq_ANKRD16.R1
Expected peak: 136
8.8M
refseq_ANKRD16.F1
refseq_ANKRD16.R1
Exon
Length: 343
Transcript: NM_019046
Length: 343
Transcript: NM_019046
Exon
Length: 221
Transcript: NM_019046
Length: 221
Transcript: NM_019046
Exon
Length: 43
Transcript: NM_019046
Length: 43
Transcript: NM_019046
Exon
Length: 109
Transcript: NM_019046
Length: 109
Transcript: NM_019046
Exon
Length: 162
Transcript: NM_019046
Length: 162
Transcript: NM_019046
Exon
Length: 79
Transcript: NM_019046
Length: 79
Transcript: NM_019046
Exon
Length: 191
Transcript: NM_019046
Length: 191
Transcript: NM_019046
Exon
Length: 966
Transcript: NM_019046
Length: 966
Transcript: NM_019046
Intron
Length: 973
Transcript: NM_019046
Length: 973
Transcript: NM_019046
Intron
Length: 2081
Transcript: NM_019046
Length: 2081
Transcript: NM_019046
Intron
Length: 1645
Transcript: NM_019046
Length: 1645
Transcript: NM_019046
Intron
Length: 801
Transcript: NM_019046
Length: 801
Transcript: NM_019046
Intron
Length: 2629
Transcript: NM_019046
Length: 2629
Transcript: NM_019046
Intron
Length: 2010
Transcript: NM_019046
Length: 2010
Transcript: NM_019046
Intron
Length: 15405
Transcript: NM_019046
Length: 15405
Transcript: NM_019046
Reaction
Expected peak: 215
21.4M
refseq_ANKRD16.F1
refseq_ANKRD16.R1
Expected peak: 215
21.4M
refseq_ANKRD16.F1
refseq_ANKRD16.R1
refseq_ANKRD16.F1
TCGATGTAGATGTGAGAGCCAC
TCGATGTAGATGTGAGAGCCAC
refseq_ANKRD16.R1
TTCAGAATCCTTCAGTCCCG
TTCAGAATCCTTCAGTCCCG