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Supplementary data
Tumor microenvironment associated modifications of alternative splicing
RBFOX2 and QKI dependent ASEs
QKI responsiveness of 382 ACE
Transcript map
: ALS2CR19 Brosseau_SKOV_LF
Exon
Length: 327
Transcript: NM_057177
Length: 327
Transcript: NM_057177
Exon
Length: 102
Transcript: NM_057177
Length: 102
Transcript: NM_057177
Exon
Length: 3
Transcript: NM_057177
Length: 3
Transcript: NM_057177
Exon
Length: 172
Transcript: NM_057177
Length: 172
Transcript: NM_057177
Exon
Length: 110
Transcript: NM_057177
Length: 110
Transcript: NM_057177
Exon
Length: 89
Transcript: NM_057177
Length: 89
Transcript: NM_057177
Exon
Length: 87
Transcript: NM_057177
Length: 87
Transcript: NM_057177
Exon
Length: 126
Transcript: NM_057177
Length: 126
Transcript: NM_057177
Exon
Length: 359
Transcript: NM_057177
Length: 359
Transcript: NM_057177
Exon
Length: 140
Transcript: NM_057177
Length: 140
Transcript: NM_057177
Exon
Length: 129
Transcript: NM_057177
Length: 129
Transcript: NM_057177
Exon
Length: 186
Transcript: NM_057177
Length: 186
Transcript: NM_057177
Exon
Length: 171
Transcript: NM_057177
Length: 171
Transcript: NM_057177
Exon
Length: 133
Transcript: NM_057177
Length: 133
Transcript: NM_057177
Exon
Length: 100
Transcript: NM_057177
Length: 100
Transcript: NM_057177
Exon
Length: 116
Transcript: NM_057177
Length: 116
Transcript: NM_057177
Exon
Length: 45
Transcript: NM_057177
Length: 45
Transcript: NM_057177
Exon
Length: 238
Transcript: NM_057177
Length: 238
Transcript: NM_057177
Exon
Length: 111
Transcript: NM_057177
Length: 111
Transcript: NM_057177
Exon
Length: 303
Transcript: NM_057177
Length: 303
Transcript: NM_057177
Exon
Length: 136
Transcript: NM_057177
Length: 136
Transcript: NM_057177
Exon
Length: 80
Transcript: NM_057177
Length: 80
Transcript: NM_057177
Exon
Length: 358
Transcript: NM_057177
Length: 358
Transcript: NM_057177
Intron
Length: 140061
Transcript: NM_057177
Length: 140061
Transcript: NM_057177
Intron
Length: 3483
Transcript: NM_057177
Length: 3483
Transcript: NM_057177
Intron
Length: 275383
Transcript: NM_057177
Length: 275383
Transcript: NM_057177
Intron
Length: 82257
Transcript: NM_057177
Length: 82257
Transcript: NM_057177
Intron
Length: 56736
Transcript: NM_057177
Length: 56736
Transcript: NM_057177
Intron
Length: 8976
Transcript: NM_057177
Length: 8976
Transcript: NM_057177
Intron
Length: 5343
Transcript: NM_057177
Length: 5343
Transcript: NM_057177
Intron
Length: 2544
Transcript: NM_057177
Length: 2544
Transcript: NM_057177
Intron
Length: 2377
Transcript: NM_057177
Length: 2377
Transcript: NM_057177
Intron
Length: 1142
Transcript: NM_057177
Length: 1142
Transcript: NM_057177
Intron
Length: 32984
Transcript: NM_057177
Length: 32984
Transcript: NM_057177
Intron
Length: 13303
Transcript: NM_057177
Length: 13303
Transcript: NM_057177
Intron
Length: 4063
Transcript: NM_057177
Length: 4063
Transcript: NM_057177
Intron
Length: 9186
Transcript: NM_057177
Length: 9186
Transcript: NM_057177
Intron
Length: 7341
Transcript: NM_057177
Length: 7341
Transcript: NM_057177
Intron
Length: 52457
Transcript: NM_057177
Length: 52457
Transcript: NM_057177
Intron
Length: 55641
Transcript: NM_057177
Length: 55641
Transcript: NM_057177
Intron
Length: 99311
Transcript: NM_057177
Length: 99311
Transcript: NM_057177
Intron
Length: 39246
Transcript: NM_057177
Length: 39246
Transcript: NM_057177
Intron
Length: 59223
Transcript: NM_057177
Length: 59223
Transcript: NM_057177
Intron
Length: 53292
Transcript: NM_057177
Length: 53292
Transcript: NM_057177
Intron
Length: 62052
Transcript: NM_057177
Length: 62052
Transcript: NM_057177
Reaction
Expected peak: 342
10.1M
refseq_ALS2CR19.F4
refseq_ALS2CR19.R4
Expected peak: 342
10.1M
refseq_ALS2CR19.F4
refseq_ALS2CR19.R4
Exon
Length: 327
Transcript: NM_152526
Length: 327
Transcript: NM_152526
Exon
Length: 102
Transcript: NM_152526
Length: 102
Transcript: NM_152526
Exon
Length: 3
Transcript: NM_152526
Length: 3
Transcript: NM_152526
Exon
Length: 172
Transcript: NM_152526
Length: 172
Transcript: NM_152526
Exon
Length: 110
Transcript: NM_152526
Length: 110
Transcript: NM_152526
Exon
Length: 89
Transcript: NM_152526
Length: 89
Transcript: NM_152526
Exon
Length: 87
Transcript: NM_152526
Length: 87
Transcript: NM_152526
Exon
Length: 126
Transcript: NM_152526
Length: 126
Transcript: NM_152526
Exon
Length: 359
Transcript: NM_152526
Length: 359
Transcript: NM_152526
Exon
Length: 140
Transcript: NM_152526
Length: 140
Transcript: NM_152526
Exon
Length: 129
Transcript: NM_152526
Length: 129
Transcript: NM_152526
Exon
Length: 171
Transcript: NM_152526
Length: 171
Transcript: NM_152526
Exon
Length: 133
Transcript: NM_152526
Length: 133
Transcript: NM_152526
Exon
Length: 100
Transcript: NM_152526
Length: 100
Transcript: NM_152526
Exon
Length: 116
Transcript: NM_152526
Length: 116
Transcript: NM_152526
Exon
Length: 45
Transcript: NM_152526
Length: 45
Transcript: NM_152526
Exon
Length: 207
Transcript: NM_152526
Length: 207
Transcript: NM_152526
Exon
Length: 238
Transcript: NM_152526
Length: 238
Transcript: NM_152526
Exon
Length: 111
Transcript: NM_152526
Length: 111
Transcript: NM_152526
Exon
Length: 303
Transcript: NM_152526
Length: 303
Transcript: NM_152526
Exon
Length: 136
Transcript: NM_152526
Length: 136
Transcript: NM_152526
Exon
Length: 80
Transcript: NM_152526
Length: 80
Transcript: NM_152526
Exon
Length: 358
Transcript: NM_152526
Length: 358
Transcript: NM_152526
Intron
Length: 140061
Transcript: NM_152526
Length: 140061
Transcript: NM_152526
Intron
Length: 3483
Transcript: NM_152526
Length: 3483
Transcript: NM_152526
Intron
Length: 275383
Transcript: NM_152526
Length: 275383
Transcript: NM_152526
Intron
Length: 82257
Transcript: NM_152526
Length: 82257
Transcript: NM_152526
Intron
Length: 56736
Transcript: NM_152526
Length: 56736
Transcript: NM_152526
Intron
Length: 8976
Transcript: NM_152526
Length: 8976
Transcript: NM_152526
Intron
Length: 5343
Transcript: NM_152526
Length: 5343
Transcript: NM_152526
Intron
Length: 2544
Transcript: NM_152526
Length: 2544
Transcript: NM_152526
Intron
Length: 2377
Transcript: NM_152526
Length: 2377
Transcript: NM_152526
Intron
Length: 1142
Transcript: NM_152526
Length: 1142
Transcript: NM_152526
Intron
Length: 46473
Transcript: NM_152526
Length: 46473
Transcript: NM_152526
Intron
Length: 4063
Transcript: NM_152526
Length: 4063
Transcript: NM_152526
Intron
Length: 9186
Transcript: NM_152526
Length: 9186
Transcript: NM_152526
Intron
Length: 7341
Transcript: NM_152526
Length: 7341
Transcript: NM_152526
Intron
Length: 52457
Transcript: NM_152526
Length: 52457
Transcript: NM_152526
Intron
Length: 54707
Transcript: NM_152526
Length: 54707
Transcript: NM_152526
Intron
Length: 727
Transcript: NM_152526
Length: 727
Transcript: NM_152526
Intron
Length: 99311
Transcript: NM_152526
Length: 99311
Transcript: NM_152526
Intron
Length: 39246
Transcript: NM_152526
Length: 39246
Transcript: NM_152526
Intron
Length: 59223
Transcript: NM_152526
Length: 59223
Transcript: NM_152526
Intron
Length: 53292
Transcript: NM_152526
Length: 53292
Transcript: NM_152526
Intron
Length: 62052
Transcript: NM_152526
Length: 62052
Transcript: NM_152526
Reaction
Expected peak: 156
26.2M
refseq_ALS2CR19.F4
refseq_ALS2CR19.R4
Expected peak: 156
26.2M
refseq_ALS2CR19.F4
refseq_ALS2CR19.R4
Exon
Length: 327
Transcript: NM_205863
Length: 327
Transcript: NM_205863
Exon
Length: 102
Transcript: NM_205863
Length: 102
Transcript: NM_205863
Exon
Length: 3
Transcript: NM_205863
Length: 3
Transcript: NM_205863
Exon
Length: 172
Transcript: NM_205863
Length: 172
Transcript: NM_205863
Exon
Length: 110
Transcript: NM_205863
Length: 110
Transcript: NM_205863
Exon
Length: 89
Transcript: NM_205863
Length: 89
Transcript: NM_205863
Exon
Length: 87
Transcript: NM_205863
Length: 87
Transcript: NM_205863
Exon
Length: 126
Transcript: NM_205863
Length: 126
Transcript: NM_205863
Exon
Length: 359
Transcript: NM_205863
Length: 359
Transcript: NM_205863
Exon
Length: 140
Transcript: NM_205863
Length: 140
Transcript: NM_205863
Exon
Length: 129
Transcript: NM_205863
Length: 129
Transcript: NM_205863
Exon
Length: 186
Transcript: NM_205863
Length: 186
Transcript: NM_205863
Exon
Length: 171
Transcript: NM_205863
Length: 171
Transcript: NM_205863
Exon
Length: 133
Transcript: NM_205863
Length: 133
Transcript: NM_205863
Exon
Length: 100
Transcript: NM_205863
Length: 100
Transcript: NM_205863
Exon
Length: 116
Transcript: NM_205863
Length: 116
Transcript: NM_205863
Exon
Length: 45
Transcript: NM_205863
Length: 45
Transcript: NM_205863
Exon
Length: 207
Transcript: NM_205863
Length: 207
Transcript: NM_205863
Exon
Length: 238
Transcript: NM_205863
Length: 238
Transcript: NM_205863
Exon
Length: 111
Transcript: NM_205863
Length: 111
Transcript: NM_205863
Exon
Length: 136
Transcript: NM_205863
Length: 136
Transcript: NM_205863
Exon
Length: 80
Transcript: NM_205863
Length: 80
Transcript: NM_205863
Exon
Length: 358
Transcript: NM_205863
Length: 358
Transcript: NM_205863
Intron
Length: 140061
Transcript: NM_205863
Length: 140061
Transcript: NM_205863
Intron
Length: 3483
Transcript: NM_205863
Length: 3483
Transcript: NM_205863
Intron
Length: 275383
Transcript: NM_205863
Length: 275383
Transcript: NM_205863
Intron
Length: 82257
Transcript: NM_205863
Length: 82257
Transcript: NM_205863
Intron
Length: 56736
Transcript: NM_205863
Length: 56736
Transcript: NM_205863
Intron
Length: 8976
Transcript: NM_205863
Length: 8976
Transcript: NM_205863
Intron
Length: 5343
Transcript: NM_205863
Length: 5343
Transcript: NM_205863
Intron
Length: 2544
Transcript: NM_205863
Length: 2544
Transcript: NM_205863
Intron
Length: 2377
Transcript: NM_205863
Length: 2377
Transcript: NM_205863
Intron
Length: 1142
Transcript: NM_205863
Length: 1142
Transcript: NM_205863
Intron
Length: 32984
Transcript: NM_205863
Length: 32984
Transcript: NM_205863
Intron
Length: 13303
Transcript: NM_205863
Length: 13303
Transcript: NM_205863
Intron
Length: 4063
Transcript: NM_205863
Length: 4063
Transcript: NM_205863
Intron
Length: 9186
Transcript: NM_205863
Length: 9186
Transcript: NM_205863
Intron
Length: 7341
Transcript: NM_205863
Length: 7341
Transcript: NM_205863
Intron
Length: 52457
Transcript: NM_205863
Length: 52457
Transcript: NM_205863
Intron
Length: 54707
Transcript: NM_205863
Length: 54707
Transcript: NM_205863
Intron
Length: 727
Transcript: NM_205863
Length: 727
Transcript: NM_205863
Intron
Length: 99311
Transcript: NM_205863
Length: 99311
Transcript: NM_205863
Intron
Length: 98772
Transcript: NM_205863
Length: 98772
Transcript: NM_205863
Intron
Length: 53292
Transcript: NM_205863
Length: 53292
Transcript: NM_205863
Intron
Length: 62052
Transcript: NM_205863
Length: 62052
Transcript: NM_205863
Reaction
Expected peak: 342
10.1M
refseq_ALS2CR19.F4
refseq_ALS2CR19.R4
Expected peak: 342
10.1M
refseq_ALS2CR19.F4
refseq_ALS2CR19.R4
refseq_ALS2CR19.R4
AGCTGGTCATTCATTCGCAG
AGCTGGTCATTCATTCGCAG
refseq_ALS2CR19.F4
AAATGGGAGAGATGTCACCG
AAATGGGAGAGATGTCACCG