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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
2. Full RefSeq screen / 9 cell lines
Transcript map
: ACOT8 HS 578T
- refseq_ACOT8.F3 / refseq_ACOT8.R3 (CM017778 C1) : Curve | Curve set
- refseq_ACOT8.F1 / refseq_ACOT8.R1 (CM017778 A23) : Curve | Curve set
Exon
Length: 209
Transcript: NM_005469
Length: 209
Transcript: NM_005469
Exon
Length: 134
Transcript: NM_005469
Length: 134
Transcript: NM_005469
Exon
Length: 226
Transcript: NM_005469
Length: 226
Transcript: NM_005469
Exon
Length: 158
Transcript: NM_005469
Length: 158
Transcript: NM_005469
Exon
Length: 195
Transcript: NM_005469
Length: 195
Transcript: NM_005469
Exon
Length: 235
Transcript: NM_005469
Length: 235
Transcript: NM_005469
Intron
Length: 1895
Transcript: NM_005469
Length: 1895
Transcript: NM_005469
Intron
Length: 6483
Transcript: NM_005469
Length: 6483
Transcript: NM_005469
Intron
Length: 4029
Transcript: NM_005469
Length: 4029
Transcript: NM_005469
Intron
Length: 541
Transcript: NM_005469
Length: 541
Transcript: NM_005469
Intron
Length: 1570
Transcript: NM_005469
Length: 1570
Transcript: NM_005469
Reaction
Expected peak: 368
40.4M
refseq_ACOT8.F3
refseq_ACOT8.R3
Expected peak: 368
40.4M
refseq_ACOT8.F3
refseq_ACOT8.R3
Reaction
Expected peak: 341
103.6M
refseq_ACOT8.F1
refseq_ACOT8.R1
Expected peak: 341
103.6M
refseq_ACOT8.F1
refseq_ACOT8.R1
Exon
Length: 209
Transcript: NM_183385
Length: 209
Transcript: NM_183385
Exon
Length: 226
Transcript: NM_183385
Length: 226
Transcript: NM_183385
Exon
Length: 158
Transcript: NM_183385
Length: 158
Transcript: NM_183385
Exon
Length: 195
Transcript: NM_183385
Length: 195
Transcript: NM_183385
Exon
Length: 235
Transcript: NM_183385
Length: 235
Transcript: NM_183385
Intron
Length: 8512
Transcript: NM_183385
Length: 8512
Transcript: NM_183385
Intron
Length: 4029
Transcript: NM_183385
Length: 4029
Transcript: NM_183385
Intron
Length: 541
Transcript: NM_183385
Length: 541
Transcript: NM_183385
Intron
Length: 1570
Transcript: NM_183385
Length: 1570
Transcript: NM_183385
Reaction
Expected peak: 234
1.5M
refseq_ACOT8.F3
refseq_ACOT8.R3
Expected peak: 234
1.5M
refseq_ACOT8.F3
refseq_ACOT8.R3
Reaction
Expected peak: 341
103.6M
refseq_ACOT8.F1
refseq_ACOT8.R1
Expected peak: 341
103.6M
refseq_ACOT8.F1
refseq_ACOT8.R1
Exon
Length: 209
Transcript: NM_183386
Length: 209
Transcript: NM_183386
Exon
Length: 134
Transcript: NM_183386
Length: 134
Transcript: NM_183386
Exon
Length: 226
Transcript: NM_183386
Length: 226
Transcript: NM_183386
Exon
Length: 158
Transcript: NM_183386
Length: 158
Transcript: NM_183386
Exon
Length: 235
Transcript: NM_183386
Length: 235
Transcript: NM_183386
Intron
Length: 1895
Transcript: NM_183386
Length: 1895
Transcript: NM_183386
Intron
Length: 6483
Transcript: NM_183386
Length: 6483
Transcript: NM_183386
Intron
Length: 4029
Transcript: NM_183386
Length: 4029
Transcript: NM_183386
Intron
Length: 2306
Transcript: NM_183386
Length: 2306
Transcript: NM_183386
Reaction
Expected peak: 368
40.4M
refseq_ACOT8.F3
refseq_ACOT8.R3
Expected peak: 368
40.4M
refseq_ACOT8.F3
refseq_ACOT8.R3
Reaction
Expected peak: 146
2.3M
refseq_ACOT8.F1
refseq_ACOT8.R1
Expected peak: 146
2.3M
refseq_ACOT8.F1
refseq_ACOT8.R1
refseq_ACOT8.F1
TCAAGCCAGTAAACCCATCC
TCAAGCCAGTAAACCCATCC
refseq_ACOT8.F3
TCAGGTTCTGTGTATGTCTCCG
TCAGGTTCTGTGTATGTCTCCG
refseq_ACOT8.R3
TCCGCTCCACTTGGTACAGTA
TCCGCTCCACTTGGTACAGTA
refseq_ACOT8.R1
CACAGCTAGGACTCCATCCTG
CACAGCTAGGACTCCATCCTG