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Supplementary data
RBFOX2 enforces the mesenchymal splicing signature in normal and cancer tissues
7. 26 switch-like targets from epithelium and mesenchyme (fetal colon) in RBFOX2, MBNL1, PTBP and ESRP knockdowns
Transcript map
: ARNT Control (MDA-MB-231)
Exon
Length: 168
Transcript: NM_001668
Length: 168
Transcript: NM_001668
Exon
Length: 112
Transcript: NM_001668
Length: 112
Transcript: NM_001668
Exon
Length: 45
Transcript: NM_001668
Length: 45
Transcript: NM_001668
Exon
Length: 45
Transcript: NM_001668
Length: 45
Transcript: NM_001668
Exon
Length: 45
Transcript: NM_001668
Length: 45
Transcript: NM_001668
Exon
Length: 214
Transcript: NM_001668
Length: 214
Transcript: NM_001668
Exon
Length: 214
Transcript: NM_001668
Length: 214
Transcript: NM_001668
Exon
Length: 103
Transcript: NM_001668
Length: 103
Transcript: NM_001668
Exon
Length: 66
Transcript: NM_001668
Length: 66
Transcript: NM_001668
Exon
Length: 86
Transcript: NM_001668
Length: 86
Transcript: NM_001668
Exon
Length: 77
Transcript: NM_001668
Length: 77
Transcript: NM_001668
Exon
Length: 135
Transcript: NM_001668
Length: 135
Transcript: NM_001668
Exon
Length: 75
Transcript: NM_001668
Length: 75
Transcript: NM_001668
Exon
Length: 152
Transcript: NM_001668
Length: 152
Transcript: NM_001668
Exon
Length: 111
Transcript: NM_001668
Length: 111
Transcript: NM_001668
Exon
Length: 73
Transcript: NM_001668
Length: 73
Transcript: NM_001668
Exon
Length: 121
Transcript: NM_001668
Length: 121
Transcript: NM_001668
Exon
Length: 103
Transcript: NM_001668
Length: 103
Transcript: NM_001668
Exon
Length: 148
Transcript: NM_001668
Length: 148
Transcript: NM_001668
Exon
Length: 163
Transcript: NM_001668
Length: 163
Transcript: NM_001668
Exon
Length: 167
Transcript: NM_001668
Length: 167
Transcript: NM_001668
Exon
Length: 2401
Transcript: NM_001668
Length: 2401
Transcript: NM_001668
Intron
Length: 18082
Transcript: NM_001668
Length: 18082
Transcript: NM_001668
Intron
Length: 5542
Transcript: NM_001668
Length: 5542
Transcript: NM_001668
Intron
Length: 6454
Transcript: NM_001668
Length: 6454
Transcript: NM_001668
Intron
Length: 3794
Transcript: NM_001668
Length: 3794
Transcript: NM_001668
Intron
Length: 2769
Transcript: NM_001668
Length: 2769
Transcript: NM_001668
Intron
Length: 2947
Transcript: NM_001668
Length: 2947
Transcript: NM_001668
Intron
Length: 1639
Transcript: NM_001668
Length: 1639
Transcript: NM_001668
Intron
Length: 2138
Transcript: NM_001668
Length: 2138
Transcript: NM_001668
Intron
Length: 430
Transcript: NM_001668
Length: 430
Transcript: NM_001668
Intron
Length: 1837
Transcript: NM_001668
Length: 1837
Transcript: NM_001668
Intron
Length: 676
Transcript: NM_001668
Length: 676
Transcript: NM_001668
Intron
Length: 2475
Transcript: NM_001668
Length: 2475
Transcript: NM_001668
Intron
Length: 3197
Transcript: NM_001668
Length: 3197
Transcript: NM_001668
Intron
Length: 5163
Transcript: NM_001668
Length: 5163
Transcript: NM_001668
Intron
Length: 486
Transcript: NM_001668
Length: 486
Transcript: NM_001668
Intron
Length: 158
Transcript: NM_001668
Length: 158
Transcript: NM_001668
Intron
Length: 191
Transcript: NM_001668
Length: 191
Transcript: NM_001668
Intron
Length: 381
Transcript: NM_001668
Length: 381
Transcript: NM_001668
Intron
Length: 2019
Transcript: NM_001668
Length: 2019
Transcript: NM_001668
Intron
Length: 738
Transcript: NM_001668
Length: 738
Transcript: NM_001668
Intron
Length: 1061
Transcript: NM_001668
Length: 1061
Transcript: NM_001668
Reaction
Expected peak: 194
74.9M
refseq_ARNT.F1
refseq_ARNT.R1
Expected peak: 194
74.9M
refseq_ARNT.F1
refseq_ARNT.R1
Exon
Length: 168
Transcript: NM_178426
Length: 168
Transcript: NM_178426
Exon
Length: 112
Transcript: NM_178426
Length: 112
Transcript: NM_178426
Exon
Length: 45
Transcript: NM_178426
Length: 45
Transcript: NM_178426
Exon
Length: 45
Transcript: NM_178426
Length: 45
Transcript: NM_178426
Exon
Length: 45
Transcript: NM_178426
Length: 45
Transcript: NM_178426
Exon
Length: 214
Transcript: NM_178426
Length: 214
Transcript: NM_178426
Exon
Length: 214
Transcript: NM_178426
Length: 214
Transcript: NM_178426
Exon
Length: 103
Transcript: NM_178426
Length: 103
Transcript: NM_178426
Exon
Length: 66
Transcript: NM_178426
Length: 66
Transcript: NM_178426
Exon
Length: 86
Transcript: NM_178426
Length: 86
Transcript: NM_178426
Exon
Length: 23
Transcript: NM_178426
Length: 23
Transcript: NM_178426
Exon
Length: 19
Transcript: NM_178426
Length: 19
Transcript: NM_178426
Exon
Length: 2401
Transcript: NM_178426
Length: 2401
Transcript: NM_178426
Intron
Length: 18082
Transcript: NM_178426
Length: 18082
Transcript: NM_178426
Intron
Length: 5542
Transcript: NM_178426
Length: 5542
Transcript: NM_178426
Intron
Length: 6454
Transcript: NM_178426
Length: 6454
Transcript: NM_178426
Intron
Length: 3794
Transcript: NM_178426
Length: 3794
Transcript: NM_178426
Intron
Length: 2769
Transcript: NM_178426
Length: 2769
Transcript: NM_178426
Intron
Length: 2947
Transcript: NM_178426
Length: 2947
Transcript: NM_178426
Intron
Length: 1639
Transcript: NM_178426
Length: 1639
Transcript: NM_178426
Intron
Length: 2138
Transcript: NM_178426
Length: 2138
Transcript: NM_178426
Intron
Length: 430
Transcript: NM_178426
Length: 430
Transcript: NM_178426
Intron
Length: 1837
Transcript: NM_178426
Length: 1837
Transcript: NM_178426
Intron
Length: 16767
Transcript: NM_178426
Length: 16767
Transcript: NM_178426
Intron
Length: 1061
Transcript: NM_178426
Length: 1061
Transcript: NM_178426
Reaction
Expected peak: 194
74.9M
refseq_ARNT.F1
refseq_ARNT.R1
Expected peak: 194
74.9M
refseq_ARNT.F1
refseq_ARNT.R1
Exon
Length: 168
Transcript: NM_178427
Length: 168
Transcript: NM_178427
Exon
Length: 112
Transcript: NM_178427
Length: 112
Transcript: NM_178427
Exon
Length: 45
Transcript: NM_178427
Length: 45
Transcript: NM_178427
Exon
Length: 45
Transcript: NM_178427
Length: 45
Transcript: NM_178427
Exon
Length: 214
Transcript: NM_178427
Length: 214
Transcript: NM_178427
Exon
Length: 214
Transcript: NM_178427
Length: 214
Transcript: NM_178427
Exon
Length: 103
Transcript: NM_178427
Length: 103
Transcript: NM_178427
Exon
Length: 66
Transcript: NM_178427
Length: 66
Transcript: NM_178427
Exon
Length: 86
Transcript: NM_178427
Length: 86
Transcript: NM_178427
Exon
Length: 77
Transcript: NM_178427
Length: 77
Transcript: NM_178427
Exon
Length: 135
Transcript: NM_178427
Length: 135
Transcript: NM_178427
Exon
Length: 75
Transcript: NM_178427
Length: 75
Transcript: NM_178427
Exon
Length: 152
Transcript: NM_178427
Length: 152
Transcript: NM_178427
Exon
Length: 111
Transcript: NM_178427
Length: 111
Transcript: NM_178427
Exon
Length: 73
Transcript: NM_178427
Length: 73
Transcript: NM_178427
Exon
Length: 121
Transcript: NM_178427
Length: 121
Transcript: NM_178427
Exon
Length: 103
Transcript: NM_178427
Length: 103
Transcript: NM_178427
Exon
Length: 148
Transcript: NM_178427
Length: 148
Transcript: NM_178427
Exon
Length: 163
Transcript: NM_178427
Length: 163
Transcript: NM_178427
Exon
Length: 167
Transcript: NM_178427
Length: 167
Transcript: NM_178427
Exon
Length: 2401
Transcript: NM_178427
Length: 2401
Transcript: NM_178427
Intron
Length: 18082
Transcript: NM_178427
Length: 18082
Transcript: NM_178427
Intron
Length: 5542
Transcript: NM_178427
Length: 5542
Transcript: NM_178427
Intron
Length: 6454
Transcript: NM_178427
Length: 6454
Transcript: NM_178427
Intron
Length: 6608
Transcript: NM_178427
Length: 6608
Transcript: NM_178427
Intron
Length: 2947
Transcript: NM_178427
Length: 2947
Transcript: NM_178427
Intron
Length: 1639
Transcript: NM_178427
Length: 1639
Transcript: NM_178427
Intron
Length: 2138
Transcript: NM_178427
Length: 2138
Transcript: NM_178427
Intron
Length: 430
Transcript: NM_178427
Length: 430
Transcript: NM_178427
Intron
Length: 1837
Transcript: NM_178427
Length: 1837
Transcript: NM_178427
Intron
Length: 676
Transcript: NM_178427
Length: 676
Transcript: NM_178427
Intron
Length: 2475
Transcript: NM_178427
Length: 2475
Transcript: NM_178427
Intron
Length: 3197
Transcript: NM_178427
Length: 3197
Transcript: NM_178427
Intron
Length: 5163
Transcript: NM_178427
Length: 5163
Transcript: NM_178427
Intron
Length: 486
Transcript: NM_178427
Length: 486
Transcript: NM_178427
Intron
Length: 158
Transcript: NM_178427
Length: 158
Transcript: NM_178427
Intron
Length: 191
Transcript: NM_178427
Length: 191
Transcript: NM_178427
Intron
Length: 381
Transcript: NM_178427
Length: 381
Transcript: NM_178427
Intron
Length: 2019
Transcript: NM_178427
Length: 2019
Transcript: NM_178427
Intron
Length: 738
Transcript: NM_178427
Length: 738
Transcript: NM_178427
Intron
Length: 1061
Transcript: NM_178427
Length: 1061
Transcript: NM_178427
Reaction
Expected peak: 149
0M
refseq_ARNT.F1
refseq_ARNT.R1
Expected peak: 149
0M
refseq_ARNT.F1
refseq_ARNT.R1
refseq_ARNT.R1
CGTAAGATGGTTAGCTTGTCTGG
CGTAAGATGGTTAGCTTGTCTGG
refseq_ARNT.F1
AACGATAAGGAGCGGTTTGC
AACGATAAGGAGCGGTTTGC