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Supplementary data
Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA
3. Array-288 -- RBM10 Knockdowns in SKOV-3 and PC-3
Transcript map
: AAA1 CTRL PC3 exp38
Exon
Length: 84
Transcript: NM_207283
Length: 84
Transcript: NM_207283
Exon
Length: 80
Transcript: NM_207283
Length: 80
Transcript: NM_207283
Exon
Length: 80
Transcript: NM_207283
Length: 80
Transcript: NM_207283
Exon
Length: 125
Transcript: NM_207283
Length: 125
Transcript: NM_207283
Intron
Length: 110307
Transcript: NM_207283
Length: 110307
Transcript: NM_207283
Intron
Length: 32295
Transcript: NM_207283
Length: 32295
Transcript: NM_207283
Intron
Length: 85385
Transcript: NM_207283
Length: 85385
Transcript: NM_207283
Exon
Length: 84
Transcript: NM_207284
Length: 84
Transcript: NM_207284
Exon
Length: 80
Transcript: NM_207284
Length: 80
Transcript: NM_207284
Exon
Length: 80
Transcript: NM_207284
Length: 80
Transcript: NM_207284
Exon
Length: 97
Transcript: NM_207284
Length: 97
Transcript: NM_207284
Intron
Length: 110307
Transcript: NM_207284
Length: 110307
Transcript: NM_207284
Intron
Length: 32295
Transcript: NM_207284
Length: 32295
Transcript: NM_207284
Intron
Length: 111733
Transcript: NM_207284
Length: 111733
Transcript: NM_207284
Exon
Length: 199
Transcript: NM_207285
Length: 199
Transcript: NM_207285
Exon
Length: 80
Transcript: NM_207285
Length: 80
Transcript: NM_207285
Exon
Length: 120
Transcript: NM_207285
Length: 120
Transcript: NM_207285
Exon
Length: 150
Transcript: NM_207285
Length: 150
Transcript: NM_207285
Exon
Length: 71
Transcript: NM_207285
Length: 71
Transcript: NM_207285
Exon
Length: 90
Transcript: NM_207285
Length: 90
Transcript: NM_207285
Intron
Length: 29257
Transcript: NM_207285
Length: 29257
Transcript: NM_207285
Intron
Length: 24537
Transcript: NM_207285
Length: 24537
Transcript: NM_207285
Intron
Length: 134218
Transcript: NM_207285
Length: 134218
Transcript: NM_207285
Intron
Length: 2560
Transcript: NM_207285
Length: 2560
Transcript: NM_207285
Intron
Length: 268
Transcript: NM_207285
Length: 268
Transcript: NM_207285
Exon
Length: 199
Transcript: NM_207286
Length: 199
Transcript: NM_207286
Exon
Length: 80
Transcript: NM_207286
Length: 80
Transcript: NM_207286
Exon
Length: 150
Transcript: NM_207286
Length: 150
Transcript: NM_207286
Exon
Length: 94
Transcript: NM_207286
Length: 94
Transcript: NM_207286
Exon
Length: 426
Transcript: NM_207286
Length: 426
Transcript: NM_207286
Intron
Length: 29257
Transcript: NM_207286
Length: 29257
Transcript: NM_207286
Intron
Length: 158875
Transcript: NM_207286
Length: 158875
Transcript: NM_207286
Intron
Length: 152039
Transcript: NM_207286
Length: 152039
Transcript: NM_207286
Intron
Length: 66731
Transcript: NM_207286
Length: 66731
Transcript: NM_207286
Reaction
Expected peak: 271
0M
refseq_AAA1.F1
refseq_AAA1.R1
Expected peak: 271
0M
refseq_AAA1.F1
refseq_AAA1.R1
Exon
Length: 199
Transcript: NM_207287
Length: 199
Transcript: NM_207287
Exon
Length: 80
Transcript: NM_207287
Length: 80
Transcript: NM_207287
Exon
Length: 94
Transcript: NM_207287
Length: 94
Transcript: NM_207287
Exon
Length: 426
Transcript: NM_207287
Length: 426
Transcript: NM_207287
Intron
Length: 29257
Transcript: NM_207287
Length: 29257
Transcript: NM_207287
Intron
Length: 311064
Transcript: NM_207287
Length: 311064
Transcript: NM_207287
Intron
Length: 66731
Transcript: NM_207287
Length: 66731
Transcript: NM_207287
Reaction
Expected peak: 121
0M
refseq_AAA1.F1
refseq_AAA1.R1
Expected peak: 121
0M
refseq_AAA1.F1
refseq_AAA1.R1
Exon
Length: 84
Transcript: NM_207288
Length: 84
Transcript: NM_207288
Exon
Length: 80
Transcript: NM_207288
Length: 80
Transcript: NM_207288
Exon
Length: 150
Transcript: NM_207288
Length: 150
Transcript: NM_207288
Exon
Length: 94
Transcript: NM_207288
Length: 94
Transcript: NM_207288
Exon
Length: 426
Transcript: NM_207288
Length: 426
Transcript: NM_207288
Intron
Length: 142682
Transcript: NM_207288
Length: 142682
Transcript: NM_207288
Intron
Length: 158875
Transcript: NM_207288
Length: 158875
Transcript: NM_207288
Intron
Length: 152039
Transcript: NM_207288
Length: 152039
Transcript: NM_207288
Intron
Length: 66731
Transcript: NM_207288
Length: 66731
Transcript: NM_207288
Reaction
Expected peak: 271
0M
refseq_AAA1.F1
refseq_AAA1.R1
Expected peak: 271
0M
refseq_AAA1.F1
refseq_AAA1.R1
Exon
Length: 199
Transcript: NM_207289
Length: 199
Transcript: NM_207289
Exon
Length: 80
Transcript: NM_207289
Length: 80
Transcript: NM_207289
Exon
Length: 150
Transcript: NM_207289
Length: 150
Transcript: NM_207289
Exon
Length: 121
Transcript: NM_207289
Length: 121
Transcript: NM_207289
Intron
Length: 29257
Transcript: NM_207289
Length: 29257
Transcript: NM_207289
Intron
Length: 158875
Transcript: NM_207289
Length: 158875
Transcript: NM_207289
Intron
Length: 1339
Transcript: NM_207289
Length: 1339
Transcript: NM_207289
Exon
Length: 199
Transcript: NM_207290
Length: 199
Transcript: NM_207290
Exon
Length: 80
Transcript: NM_207290
Length: 80
Transcript: NM_207290
Exon
Length: 97
Transcript: NM_207290
Length: 97
Transcript: NM_207290
Intron
Length: 29257
Transcript: NM_207290
Length: 29257
Transcript: NM_207290
Intron
Length: 111733
Transcript: NM_207290
Length: 111733
Transcript: NM_207290
refseq_AAA1.R1
AGGCTCAGCTAGGGAAGCAT
AGGCTCAGCTAGGGAAGCAT
refseq_AAA1.F1
GCCCATCAGTTTCTTGTGAGA
GCCCATCAGTTTCTTGTGAGA