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Supplementary data
Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA
3. Array-288 -- RBM10 Knockdowns in SKOV-3 and PC-3
Transcript map
: APAF1 CTRL PC3 exp38
Exon
Length: 536
Transcript: NM_001160
Length: 536
Transcript: NM_001160
Exon
Length: 179
Transcript: NM_001160
Length: 179
Transcript: NM_001160
Exon
Length: 157
Transcript: NM_001160
Length: 157
Transcript: NM_001160
Exon
Length: 198
Transcript: NM_001160
Length: 198
Transcript: NM_001160
Exon
Length: 184
Transcript: NM_001160
Length: 184
Transcript: NM_001160
Exon
Length: 113
Transcript: NM_001160
Length: 113
Transcript: NM_001160
Exon
Length: 132
Transcript: NM_001160
Length: 132
Transcript: NM_001160
Exon
Length: 239
Transcript: NM_001160
Length: 239
Transcript: NM_001160
Exon
Length: 168
Transcript: NM_001160
Length: 168
Transcript: NM_001160
Exon
Length: 132
Transcript: NM_001160
Length: 132
Transcript: NM_001160
Exon
Length: 114
Transcript: NM_001160
Length: 114
Transcript: NM_001160
Exon
Length: 185
Transcript: NM_001160
Length: 185
Transcript: NM_001160
Exon
Length: 127
Transcript: NM_001160
Length: 127
Transcript: NM_001160
Exon
Length: 126
Transcript: NM_001160
Length: 126
Transcript: NM_001160
Exon
Length: 132
Transcript: NM_001160
Length: 132
Transcript: NM_001160
Exon
Length: 126
Transcript: NM_001160
Length: 126
Transcript: NM_001160
Exon
Length: 162
Transcript: NM_001160
Length: 162
Transcript: NM_001160
Exon
Length: 126
Transcript: NM_001160
Length: 126
Transcript: NM_001160
Exon
Length: 120
Transcript: NM_001160
Length: 120
Transcript: NM_001160
Exon
Length: 117
Transcript: NM_001160
Length: 117
Transcript: NM_001160
Exon
Length: 126
Transcript: NM_001160
Length: 126
Transcript: NM_001160
Exon
Length: 120
Transcript: NM_001160
Length: 120
Transcript: NM_001160
Exon
Length: 126
Transcript: NM_001160
Length: 126
Transcript: NM_001160
Exon
Length: 126
Transcript: NM_001160
Length: 126
Transcript: NM_001160
Exon
Length: 144
Transcript: NM_001160
Length: 144
Transcript: NM_001160
Exon
Length: 3014
Transcript: NM_001160
Length: 3014
Transcript: NM_001160
Intron
Length: 2483
Transcript: NM_001160
Length: 2483
Transcript: NM_001160
Intron
Length: 128
Transcript: NM_001160
Length: 128
Transcript: NM_001160
Intron
Length: 704
Transcript: NM_001160
Length: 704
Transcript: NM_001160
Intron
Length: 9475
Transcript: NM_001160
Length: 9475
Transcript: NM_001160
Intron
Length: 3112
Transcript: NM_001160
Length: 3112
Transcript: NM_001160
Intron
Length: 106
Transcript: NM_001160
Length: 106
Transcript: NM_001160
Intron
Length: 2746
Transcript: NM_001160
Length: 2746
Transcript: NM_001160
Intron
Length: 398
Transcript: NM_001160
Length: 398
Transcript: NM_001160
Intron
Length: 1155
Transcript: NM_001160
Length: 1155
Transcript: NM_001160
Intron
Length: 3328
Transcript: NM_001160
Length: 3328
Transcript: NM_001160
Intron
Length: 448
Transcript: NM_001160
Length: 448
Transcript: NM_001160
Intron
Length: 5705
Transcript: NM_001160
Length: 5705
Transcript: NM_001160
Intron
Length: 2725
Transcript: NM_001160
Length: 2725
Transcript: NM_001160
Intron
Length: 2740
Transcript: NM_001160
Length: 2740
Transcript: NM_001160
Intron
Length: 3473
Transcript: NM_001160
Length: 3473
Transcript: NM_001160
Intron
Length: 12534
Transcript: NM_001160
Length: 12534
Transcript: NM_001160
Intron
Length: 6915
Transcript: NM_001160
Length: 6915
Transcript: NM_001160
Intron
Length: 1974
Transcript: NM_001160
Length: 1974
Transcript: NM_001160
Intron
Length: 3614
Transcript: NM_001160
Length: 3614
Transcript: NM_001160
Intron
Length: 2991
Transcript: NM_001160
Length: 2991
Transcript: NM_001160
Intron
Length: 7640
Transcript: NM_001160
Length: 7640
Transcript: NM_001160
Intron
Length: 326
Transcript: NM_001160
Length: 326
Transcript: NM_001160
Intron
Length: 1650
Transcript: NM_001160
Length: 1650
Transcript: NM_001160
Intron
Length: 1632
Transcript: NM_001160
Length: 1632
Transcript: NM_001160
Intron
Length: 5103
Transcript: NM_001160
Length: 5103
Transcript: NM_001160
Reaction
Expected peak: 193
71.2M
rs.APAF1.F1
rs.APAF1.R1
Expected peak: 193
71.2M
rs.APAF1.F1
rs.APAF1.R1
Exon
Length: 536
Transcript: NM_013229
Length: 536
Transcript: NM_013229
Exon
Length: 179
Transcript: NM_013229
Length: 179
Transcript: NM_013229
Exon
Length: 157
Transcript: NM_013229
Length: 157
Transcript: NM_013229
Exon
Length: 198
Transcript: NM_013229
Length: 198
Transcript: NM_013229
Exon
Length: 184
Transcript: NM_013229
Length: 184
Transcript: NM_013229
Exon
Length: 113
Transcript: NM_013229
Length: 113
Transcript: NM_013229
Exon
Length: 132
Transcript: NM_013229
Length: 132
Transcript: NM_013229
Exon
Length: 239
Transcript: NM_013229
Length: 239
Transcript: NM_013229
Exon
Length: 168
Transcript: NM_013229
Length: 168
Transcript: NM_013229
Exon
Length: 132
Transcript: NM_013229
Length: 132
Transcript: NM_013229
Exon
Length: 114
Transcript: NM_013229
Length: 114
Transcript: NM_013229
Exon
Length: 185
Transcript: NM_013229
Length: 185
Transcript: NM_013229
Exon
Length: 127
Transcript: NM_013229
Length: 127
Transcript: NM_013229
Exon
Length: 126
Transcript: NM_013229
Length: 126
Transcript: NM_013229
Exon
Length: 132
Transcript: NM_013229
Length: 132
Transcript: NM_013229
Exon
Length: 126
Transcript: NM_013229
Length: 126
Transcript: NM_013229
Exon
Length: 162
Transcript: NM_013229
Length: 162
Transcript: NM_013229
Exon
Length: 129
Transcript: NM_013229
Length: 129
Transcript: NM_013229
Exon
Length: 126
Transcript: NM_013229
Length: 126
Transcript: NM_013229
Exon
Length: 120
Transcript: NM_013229
Length: 120
Transcript: NM_013229
Exon
Length: 117
Transcript: NM_013229
Length: 117
Transcript: NM_013229
Exon
Length: 126
Transcript: NM_013229
Length: 126
Transcript: NM_013229
Exon
Length: 120
Transcript: NM_013229
Length: 120
Transcript: NM_013229
Exon
Length: 126
Transcript: NM_013229
Length: 126
Transcript: NM_013229
Exon
Length: 126
Transcript: NM_013229
Length: 126
Transcript: NM_013229
Exon
Length: 144
Transcript: NM_013229
Length: 144
Transcript: NM_013229
Exon
Length: 3014
Transcript: NM_013229
Length: 3014
Transcript: NM_013229
Intron
Length: 2483
Transcript: NM_013229
Length: 2483
Transcript: NM_013229
Intron
Length: 128
Transcript: NM_013229
Length: 128
Transcript: NM_013229
Intron
Length: 704
Transcript: NM_013229
Length: 704
Transcript: NM_013229
Intron
Length: 9475
Transcript: NM_013229
Length: 9475
Transcript: NM_013229
Intron
Length: 3112
Transcript: NM_013229
Length: 3112
Transcript: NM_013229
Intron
Length: 106
Transcript: NM_013229
Length: 106
Transcript: NM_013229
Intron
Length: 2746
Transcript: NM_013229
Length: 2746
Transcript: NM_013229
Intron
Length: 398
Transcript: NM_013229
Length: 398
Transcript: NM_013229
Intron
Length: 1155
Transcript: NM_013229
Length: 1155
Transcript: NM_013229
Intron
Length: 3328
Transcript: NM_013229
Length: 3328
Transcript: NM_013229
Intron
Length: 448
Transcript: NM_013229
Length: 448
Transcript: NM_013229
Intron
Length: 5705
Transcript: NM_013229
Length: 5705
Transcript: NM_013229
Intron
Length: 2725
Transcript: NM_013229
Length: 2725
Transcript: NM_013229
Intron
Length: 2740
Transcript: NM_013229
Length: 2740
Transcript: NM_013229
Intron
Length: 3473
Transcript: NM_013229
Length: 3473
Transcript: NM_013229
Intron
Length: 12534
Transcript: NM_013229
Length: 12534
Transcript: NM_013229
Intron
Length: 3801
Transcript: NM_013229
Length: 3801
Transcript: NM_013229
Intron
Length: 2985
Transcript: NM_013229
Length: 2985
Transcript: NM_013229
Intron
Length: 1974
Transcript: NM_013229
Length: 1974
Transcript: NM_013229
Intron
Length: 3614
Transcript: NM_013229
Length: 3614
Transcript: NM_013229
Intron
Length: 2991
Transcript: NM_013229
Length: 2991
Transcript: NM_013229
Intron
Length: 7640
Transcript: NM_013229
Length: 7640
Transcript: NM_013229
Intron
Length: 326
Transcript: NM_013229
Length: 326
Transcript: NM_013229
Intron
Length: 1650
Transcript: NM_013229
Length: 1650
Transcript: NM_013229
Intron
Length: 1632
Transcript: NM_013229
Length: 1632
Transcript: NM_013229
Intron
Length: 5103
Transcript: NM_013229
Length: 5103
Transcript: NM_013229
Reaction
Expected peak: 322
95.9M
rs.APAF1.F1
rs.APAF1.R1
Expected peak: 322
95.9M
rs.APAF1.F1
rs.APAF1.R1
Exon
Length: 536
Transcript: NM_181861
Length: 536
Transcript: NM_181861
Exon
Length: 179
Transcript: NM_181861
Length: 179
Transcript: NM_181861
Exon
Length: 190
Transcript: NM_181861
Length: 190
Transcript: NM_181861
Exon
Length: 198
Transcript: NM_181861
Length: 198
Transcript: NM_181861
Exon
Length: 184
Transcript: NM_181861
Length: 184
Transcript: NM_181861
Exon
Length: 113
Transcript: NM_181861
Length: 113
Transcript: NM_181861
Exon
Length: 132
Transcript: NM_181861
Length: 132
Transcript: NM_181861
Exon
Length: 239
Transcript: NM_181861
Length: 239
Transcript: NM_181861
Exon
Length: 168
Transcript: NM_181861
Length: 168
Transcript: NM_181861
Exon
Length: 132
Transcript: NM_181861
Length: 132
Transcript: NM_181861
Exon
Length: 114
Transcript: NM_181861
Length: 114
Transcript: NM_181861
Exon
Length: 185
Transcript: NM_181861
Length: 185
Transcript: NM_181861
Exon
Length: 127
Transcript: NM_181861
Length: 127
Transcript: NM_181861
Exon
Length: 126
Transcript: NM_181861
Length: 126
Transcript: NM_181861
Exon
Length: 132
Transcript: NM_181861
Length: 132
Transcript: NM_181861
Exon
Length: 126
Transcript: NM_181861
Length: 126
Transcript: NM_181861
Exon
Length: 162
Transcript: NM_181861
Length: 162
Transcript: NM_181861
Exon
Length: 129
Transcript: NM_181861
Length: 129
Transcript: NM_181861
Exon
Length: 126
Transcript: NM_181861
Length: 126
Transcript: NM_181861
Exon
Length: 120
Transcript: NM_181861
Length: 120
Transcript: NM_181861
Exon
Length: 117
Transcript: NM_181861
Length: 117
Transcript: NM_181861
Exon
Length: 126
Transcript: NM_181861
Length: 126
Transcript: NM_181861
Exon
Length: 120
Transcript: NM_181861
Length: 120
Transcript: NM_181861
Exon
Length: 126
Transcript: NM_181861
Length: 126
Transcript: NM_181861
Exon
Length: 126
Transcript: NM_181861
Length: 126
Transcript: NM_181861
Exon
Length: 144
Transcript: NM_181861
Length: 144
Transcript: NM_181861
Exon
Length: 3014
Transcript: NM_181861
Length: 3014
Transcript: NM_181861
Intron
Length: 2483
Transcript: NM_181861
Length: 2483
Transcript: NM_181861
Intron
Length: 128
Transcript: NM_181861
Length: 128
Transcript: NM_181861
Intron
Length: 671
Transcript: NM_181861
Length: 671
Transcript: NM_181861
Intron
Length: 9475
Transcript: NM_181861
Length: 9475
Transcript: NM_181861
Intron
Length: 3112
Transcript: NM_181861
Length: 3112
Transcript: NM_181861
Intron
Length: 106
Transcript: NM_181861
Length: 106
Transcript: NM_181861
Intron
Length: 2746
Transcript: NM_181861
Length: 2746
Transcript: NM_181861
Intron
Length: 398
Transcript: NM_181861
Length: 398
Transcript: NM_181861
Intron
Length: 1155
Transcript: NM_181861
Length: 1155
Transcript: NM_181861
Intron
Length: 3328
Transcript: NM_181861
Length: 3328
Transcript: NM_181861
Intron
Length: 448
Transcript: NM_181861
Length: 448
Transcript: NM_181861
Intron
Length: 5705
Transcript: NM_181861
Length: 5705
Transcript: NM_181861
Intron
Length: 2725
Transcript: NM_181861
Length: 2725
Transcript: NM_181861
Intron
Length: 2740
Transcript: NM_181861
Length: 2740
Transcript: NM_181861
Intron
Length: 3473
Transcript: NM_181861
Length: 3473
Transcript: NM_181861
Intron
Length: 12534
Transcript: NM_181861
Length: 12534
Transcript: NM_181861
Intron
Length: 3801
Transcript: NM_181861
Length: 3801
Transcript: NM_181861
Intron
Length: 2985
Transcript: NM_181861
Length: 2985
Transcript: NM_181861
Intron
Length: 1974
Transcript: NM_181861
Length: 1974
Transcript: NM_181861
Intron
Length: 3614
Transcript: NM_181861
Length: 3614
Transcript: NM_181861
Intron
Length: 2991
Transcript: NM_181861
Length: 2991
Transcript: NM_181861
Intron
Length: 7640
Transcript: NM_181861
Length: 7640
Transcript: NM_181861
Intron
Length: 326
Transcript: NM_181861
Length: 326
Transcript: NM_181861
Intron
Length: 1650
Transcript: NM_181861
Length: 1650
Transcript: NM_181861
Intron
Length: 1632
Transcript: NM_181861
Length: 1632
Transcript: NM_181861
Intron
Length: 5103
Transcript: NM_181861
Length: 5103
Transcript: NM_181861
Reaction
Expected peak: 322
95.9M
rs.APAF1.F1
rs.APAF1.R1
Expected peak: 322
95.9M
rs.APAF1.F1
rs.APAF1.R1
Exon
Length: 536
Transcript: NM_181868
Length: 536
Transcript: NM_181868
Exon
Length: 179
Transcript: NM_181868
Length: 179
Transcript: NM_181868
Exon
Length: 190
Transcript: NM_181868
Length: 190
Transcript: NM_181868
Exon
Length: 198
Transcript: NM_181868
Length: 198
Transcript: NM_181868
Exon
Length: 184
Transcript: NM_181868
Length: 184
Transcript: NM_181868
Exon
Length: 113
Transcript: NM_181868
Length: 113
Transcript: NM_181868
Exon
Length: 132
Transcript: NM_181868
Length: 132
Transcript: NM_181868
Exon
Length: 239
Transcript: NM_181868
Length: 239
Transcript: NM_181868
Exon
Length: 168
Transcript: NM_181868
Length: 168
Transcript: NM_181868
Exon
Length: 132
Transcript: NM_181868
Length: 132
Transcript: NM_181868
Exon
Length: 114
Transcript: NM_181868
Length: 114
Transcript: NM_181868
Exon
Length: 185
Transcript: NM_181868
Length: 185
Transcript: NM_181868
Exon
Length: 127
Transcript: NM_181868
Length: 127
Transcript: NM_181868
Exon
Length: 126
Transcript: NM_181868
Length: 126
Transcript: NM_181868
Exon
Length: 132
Transcript: NM_181868
Length: 132
Transcript: NM_181868
Exon
Length: 126
Transcript: NM_181868
Length: 126
Transcript: NM_181868
Exon
Length: 162
Transcript: NM_181868
Length: 162
Transcript: NM_181868
Exon
Length: 126
Transcript: NM_181868
Length: 126
Transcript: NM_181868
Exon
Length: 120
Transcript: NM_181868
Length: 120
Transcript: NM_181868
Exon
Length: 117
Transcript: NM_181868
Length: 117
Transcript: NM_181868
Exon
Length: 126
Transcript: NM_181868
Length: 126
Transcript: NM_181868
Exon
Length: 120
Transcript: NM_181868
Length: 120
Transcript: NM_181868
Exon
Length: 126
Transcript: NM_181868
Length: 126
Transcript: NM_181868
Exon
Length: 126
Transcript: NM_181868
Length: 126
Transcript: NM_181868
Exon
Length: 144
Transcript: NM_181868
Length: 144
Transcript: NM_181868
Exon
Length: 3014
Transcript: NM_181868
Length: 3014
Transcript: NM_181868
Intron
Length: 2483
Transcript: NM_181868
Length: 2483
Transcript: NM_181868
Intron
Length: 128
Transcript: NM_181868
Length: 128
Transcript: NM_181868
Intron
Length: 671
Transcript: NM_181868
Length: 671
Transcript: NM_181868
Intron
Length: 9475
Transcript: NM_181868
Length: 9475
Transcript: NM_181868
Intron
Length: 3112
Transcript: NM_181868
Length: 3112
Transcript: NM_181868
Intron
Length: 106
Transcript: NM_181868
Length: 106
Transcript: NM_181868
Intron
Length: 2746
Transcript: NM_181868
Length: 2746
Transcript: NM_181868
Intron
Length: 398
Transcript: NM_181868
Length: 398
Transcript: NM_181868
Intron
Length: 1155
Transcript: NM_181868
Length: 1155
Transcript: NM_181868
Intron
Length: 3328
Transcript: NM_181868
Length: 3328
Transcript: NM_181868
Intron
Length: 448
Transcript: NM_181868
Length: 448
Transcript: NM_181868
Intron
Length: 5705
Transcript: NM_181868
Length: 5705
Transcript: NM_181868
Intron
Length: 2725
Transcript: NM_181868
Length: 2725
Transcript: NM_181868
Intron
Length: 2740
Transcript: NM_181868
Length: 2740
Transcript: NM_181868
Intron
Length: 3473
Transcript: NM_181868
Length: 3473
Transcript: NM_181868
Intron
Length: 12534
Transcript: NM_181868
Length: 12534
Transcript: NM_181868
Intron
Length: 6915
Transcript: NM_181868
Length: 6915
Transcript: NM_181868
Intron
Length: 1974
Transcript: NM_181868
Length: 1974
Transcript: NM_181868
Intron
Length: 3614
Transcript: NM_181868
Length: 3614
Transcript: NM_181868
Intron
Length: 2991
Transcript: NM_181868
Length: 2991
Transcript: NM_181868
Intron
Length: 7640
Transcript: NM_181868
Length: 7640
Transcript: NM_181868
Intron
Length: 326
Transcript: NM_181868
Length: 326
Transcript: NM_181868
Intron
Length: 1650
Transcript: NM_181868
Length: 1650
Transcript: NM_181868
Intron
Length: 1632
Transcript: NM_181868
Length: 1632
Transcript: NM_181868
Intron
Length: 5103
Transcript: NM_181868
Length: 5103
Transcript: NM_181868
Reaction
Expected peak: 193
71.2M
rs.APAF1.F1
rs.APAF1.R1
Expected peak: 193
71.2M
rs.APAF1.F1
rs.APAF1.R1
Exon
Length: 536
Transcript: NM_181869
Length: 536
Transcript: NM_181869
Exon
Length: 179
Transcript: NM_181869
Length: 179
Transcript: NM_181869
Exon
Length: 190
Transcript: NM_181869
Length: 190
Transcript: NM_181869
Exon
Length: 198
Transcript: NM_181869
Length: 198
Transcript: NM_181869
Exon
Length: 184
Transcript: NM_181869
Length: 184
Transcript: NM_181869
Exon
Length: 113
Transcript: NM_181869
Length: 113
Transcript: NM_181869
Exon
Length: 132
Transcript: NM_181869
Length: 132
Transcript: NM_181869
Exon
Length: 3014
Transcript: NM_181869
Length: 3014
Transcript: NM_181869
Intron
Length: 2483
Transcript: NM_181869
Length: 2483
Transcript: NM_181869
Intron
Length: 128
Transcript: NM_181869
Length: 128
Transcript: NM_181869
Intron
Length: 671
Transcript: NM_181869
Length: 671
Transcript: NM_181869
Intron
Length: 9475
Transcript: NM_181869
Length: 9475
Transcript: NM_181869
Intron
Length: 3112
Transcript: NM_181869
Length: 3112
Transcript: NM_181869
Intron
Length: 106
Transcript: NM_181869
Length: 106
Transcript: NM_181869
Intron
Length: 69613
Transcript: NM_181869
Length: 69613
Transcript: NM_181869
rs.APAF1.R1
CCACCTTTGAACGTGAGTCTGT
CCACCTTTGAACGTGAGTCTGT
rs.APAF1.F1
CTTTGGGATGCGACATCAGCAA
CTTTGGGATGCGACATCAGCAA