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Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: CHN2
Exon
Length: 459
Transcript: CHN2.aAug05
Length: 459
Transcript: CHN2.aAug05
Exon
Length: 39
Transcript: CHN2.aAug05
Length: 39
Transcript: CHN2.aAug05
Exon
Length: 56
Transcript: CHN2.aAug05
Length: 56
Transcript: CHN2.aAug05
Exon
Length: 32
Transcript: CHN2.aAug05
Length: 32
Transcript: CHN2.aAug05
Exon
Length: 114
Transcript: CHN2.aAug05
Length: 114
Transcript: CHN2.aAug05
Exon
Length: 286
Transcript: CHN2.aAug05
Length: 286
Transcript: CHN2.aAug05
Exon
Length: 78
Transcript: CHN2.aAug05
Length: 78
Transcript: CHN2.aAug05
Exon
Length: 85
Transcript: CHN2.aAug05
Length: 85
Transcript: CHN2.aAug05
Exon
Length: 174
Transcript: CHN2.aAug05
Length: 174
Transcript: CHN2.aAug05
Exon
Length: 78
Transcript: CHN2.aAug05
Length: 78
Transcript: CHN2.aAug05
Exon
Length: 138
Transcript: CHN2.aAug05
Length: 138
Transcript: CHN2.aAug05
Exon
Length: 106
Transcript: CHN2.aAug05
Length: 106
Transcript: CHN2.aAug05
Exon
Length: 779
Transcript: CHN2.aAug05
Length: 779
Transcript: CHN2.aAug05
Intron
Length: 159634
Transcript: CHN2.aAug05
Length: 159634
Transcript: CHN2.aAug05
Intron
Length: 13268
Transcript: CHN2.aAug05
Length: 13268
Transcript: CHN2.aAug05
Intron
Length: 25691
Transcript: CHN2.aAug05
Length: 25691
Transcript: CHN2.aAug05
Intron
Length: 4662
Transcript: CHN2.aAug05
Length: 4662
Transcript: CHN2.aAug05
Intron
Length: 2056
Transcript: CHN2.aAug05
Length: 2056
Transcript: CHN2.aAug05
Intron
Length: 79450
Transcript: CHN2.aAug05
Length: 79450
Transcript: CHN2.aAug05
Intron
Length: 15595
Transcript: CHN2.aAug05
Length: 15595
Transcript: CHN2.aAug05
Intron
Length: 3830
Transcript: CHN2.aAug05
Length: 3830
Transcript: CHN2.aAug05
Intron
Length: 4703
Transcript: CHN2.aAug05
Length: 4703
Transcript: CHN2.aAug05
Intron
Length: 2406
Transcript: CHN2.aAug05
Length: 2406
Transcript: CHN2.aAug05
Intron
Length: 1935
Transcript: CHN2.aAug05
Length: 1935
Transcript: CHN2.aAug05
Intron
Length: 3157
Transcript: CHN2.aAug05
Length: 3157
Transcript: CHN2.aAug05
Exon
Length: 645
Transcript: CHN2.bAug05
Length: 645
Transcript: CHN2.bAug05
Exon
Length: 85
Transcript: CHN2.bAug05
Length: 85
Transcript: CHN2.bAug05
Exon
Length: 174
Transcript: CHN2.bAug05
Length: 174
Transcript: CHN2.bAug05
Exon
Length: 78
Transcript: CHN2.bAug05
Length: 78
Transcript: CHN2.bAug05
Exon
Length: 138
Transcript: CHN2.bAug05
Length: 138
Transcript: CHN2.bAug05
Exon
Length: 106
Transcript: CHN2.bAug05
Length: 106
Transcript: CHN2.bAug05
Exon
Length: 1772
Transcript: CHN2.bAug05
Length: 1772
Transcript: CHN2.bAug05
Intron
Length: 15595
Transcript: CHN2.bAug05
Length: 15595
Transcript: CHN2.bAug05
Intron
Length: 3830
Transcript: CHN2.bAug05
Length: 3830
Transcript: CHN2.bAug05
Intron
Length: 4703
Transcript: CHN2.bAug05
Length: 4703
Transcript: CHN2.bAug05
Intron
Length: 2406
Transcript: CHN2.bAug05
Length: 2406
Transcript: CHN2.bAug05
Intron
Length: 1935
Transcript: CHN2.bAug05
Length: 1935
Transcript: CHN2.bAug05
Intron
Length: 3157
Transcript: CHN2.bAug05
Length: 3157
Transcript: CHN2.bAug05
Exon
Length: 62
Transcript: CHN2.cAug05
Length: 62
Transcript: CHN2.cAug05
Exon
Length: 39
Transcript: CHN2.cAug05
Length: 39
Transcript: CHN2.cAug05
Exon
Length: 56
Transcript: CHN2.cAug05
Length: 56
Transcript: CHN2.cAug05
Exon
Length: 32
Transcript: CHN2.cAug05
Length: 32
Transcript: CHN2.cAug05
Exon
Length: 114
Transcript: CHN2.cAug05
Length: 114
Transcript: CHN2.cAug05
Exon
Length: 286
Transcript: CHN2.cAug05
Length: 286
Transcript: CHN2.cAug05
Exon
Length: 149
Transcript: CHN2.cAug05
Length: 149
Transcript: CHN2.cAug05
Exon
Length: 154
Transcript: CHN2.cAug05
Length: 154
Transcript: CHN2.cAug05
Intron
Length: 20051
Transcript: CHN2.cAug05
Length: 20051
Transcript: CHN2.cAug05
Intron
Length: 13268
Transcript: CHN2.cAug05
Length: 13268
Transcript: CHN2.cAug05
Intron
Length: 25691
Transcript: CHN2.cAug05
Length: 25691
Transcript: CHN2.cAug05
Intron
Length: 4662
Transcript: CHN2.cAug05
Length: 4662
Transcript: CHN2.cAug05
Intron
Length: 2056
Transcript: CHN2.cAug05
Length: 2056
Transcript: CHN2.cAug05
Intron
Length: 8662
Transcript: CHN2.cAug05
Length: 8662
Transcript: CHN2.cAug05
Intron
Length: 2050
Transcript: CHN2.cAug05
Length: 2050
Transcript: CHN2.cAug05
Exon
Length: 131
Transcript: CHN2.dAug05
Length: 131
Transcript: CHN2.dAug05
Exon
Length: 112
Transcript: CHN2.dAug05
Length: 112
Transcript: CHN2.dAug05
Exon
Length: 39
Transcript: CHN2.dAug05
Length: 39
Transcript: CHN2.dAug05
Exon
Length: 56
Transcript: CHN2.dAug05
Length: 56
Transcript: CHN2.dAug05
Exon
Length: 32
Transcript: CHN2.dAug05
Length: 32
Transcript: CHN2.dAug05
Exon
Length: 114
Transcript: CHN2.dAug05
Length: 114
Transcript: CHN2.dAug05
Exon
Length: 97
Transcript: CHN2.dAug05
Length: 97
Transcript: CHN2.dAug05
Intron
Length: 103
Transcript: CHN2.dAug05
Length: 103
Transcript: CHN2.dAug05
Intron
Length: 207664
Transcript: CHN2.dAug05
Length: 207664
Transcript: CHN2.dAug05
Intron
Length: 13268
Transcript: CHN2.dAug05
Length: 13268
Transcript: CHN2.dAug05
Intron
Length: 25691
Transcript: CHN2.dAug05
Length: 25691
Transcript: CHN2.dAug05
Intron
Length: 4662
Transcript: CHN2.dAug05
Length: 4662
Transcript: CHN2.dAug05
Intron
Length: 2056
Transcript: CHN2.dAug05
Length: 2056
Transcript: CHN2.dAug05
Reaction
Expected peak: 221
Associated peak: 232,233,234,235,240,241
Repeated 51 time
Molarity: 17.20M
Forward: CHN2.F1
Reverse: CHN2.R1
Expected peak: 221
Associated peak: 232,233,234,235,240,241
Repeated 51 time
Molarity: 17.20M
Forward: CHN2.F1
Reverse: CHN2.R1
Exon
Length: 1831
Transcript: CHN2.eAug05
Length: 1831
Transcript: CHN2.eAug05
Exon
Length: 725
Transcript: CHN2.eAug05
Length: 725
Transcript: CHN2.eAug05
Intron
Length: 2056
Transcript: CHN2.eAug05
Length: 2056
Transcript: CHN2.eAug05
Exon
Length: 44
Transcript: CHN2.fAug05
Length: 44
Transcript: CHN2.fAug05
Exon
Length: 32
Transcript: CHN2.fAug05
Length: 32
Transcript: CHN2.fAug05
Exon
Length: 114
Transcript: CHN2.fAug05
Length: 114
Transcript: CHN2.fAug05
Exon
Length: 286
Transcript: CHN2.fAug05
Length: 286
Transcript: CHN2.fAug05
Intron
Length: 17219
Transcript: CHN2.fAug05
Length: 17219
Transcript: CHN2.fAug05
Intron
Length: 4662
Transcript: CHN2.fAug05
Length: 4662
Transcript: CHN2.fAug05
Intron
Length: 2056
Transcript: CHN2.fAug05
Length: 2056
Transcript: CHN2.fAug05
Exon
Length: 149
Transcript: CHN2.gAug05
Length: 149
Transcript: CHN2.gAug05
Exon
Length: 39
Transcript: CHN2.gAug05
Length: 39
Transcript: CHN2.gAug05
Exon
Length: 56
Transcript: CHN2.gAug05
Length: 56
Transcript: CHN2.gAug05
Exon
Length: 32
Transcript: CHN2.gAug05
Length: 32
Transcript: CHN2.gAug05
Exon
Length: 114
Transcript: CHN2.gAug05
Length: 114
Transcript: CHN2.gAug05
Exon
Length: 286
Transcript: CHN2.gAug05
Length: 286
Transcript: CHN2.gAug05
Intron
Length: 207879
Transcript: CHN2.gAug05
Length: 207879
Transcript: CHN2.gAug05
Intron
Length: 13268
Transcript: CHN2.gAug05
Length: 13268
Transcript: CHN2.gAug05
Intron
Length: 25691
Transcript: CHN2.gAug05
Length: 25691
Transcript: CHN2.gAug05
Intron
Length: 4662
Transcript: CHN2.gAug05
Length: 4662
Transcript: CHN2.gAug05
Intron
Length: 2056
Transcript: CHN2.gAug05
Length: 2056
Transcript: CHN2.gAug05
Reaction
Expected peak: 109
Associated peak: 113,114,115,116,117
Repeated 51 time
Molarity: 4.46M
Forward: CHN2.F1
Reverse: CHN2.R1
Expected peak: 109
Associated peak: 113,114,115,116,117
Repeated 51 time
Molarity: 4.46M
Forward: CHN2.F1
Reverse: CHN2.R1
Exon
Length: 136
Transcript: CHN2.hAug05
Length: 136
Transcript: CHN2.hAug05
Exon
Length: 230
Transcript: CHN2.hAug05
Length: 230
Transcript: CHN2.hAug05
Intron
Length: 103
Transcript: CHN2.hAug05
Length: 103
Transcript: CHN2.hAug05
Exon
Length: 260
Transcript: CHN2.iAug05
Length: 260
Transcript: CHN2.iAug05
Exon
Length: 39
Transcript: CHN2.iAug05
Length: 39
Transcript: CHN2.iAug05
Exon
Length: 56
Transcript: CHN2.iAug05
Length: 56
Transcript: CHN2.iAug05
Exon
Length: 32
Transcript: CHN2.iAug05
Length: 32
Transcript: CHN2.iAug05
Exon
Length: 114
Transcript: CHN2.iAug05
Length: 114
Transcript: CHN2.iAug05
Exon
Length: 234
Transcript: CHN2.iAug05
Length: 234
Transcript: CHN2.iAug05
Intron
Length: 65484
Transcript: CHN2.iAug05
Length: 65484
Transcript: CHN2.iAug05
Intron
Length: 13268
Transcript: CHN2.iAug05
Length: 13268
Transcript: CHN2.iAug05
Intron
Length: 25691
Transcript: CHN2.iAug05
Length: 25691
Transcript: CHN2.iAug05
Intron
Length: 4662
Transcript: CHN2.iAug05
Length: 4662
Transcript: CHN2.iAug05
Intron
Length: 2056
Transcript: CHN2.iAug05
Length: 2056
Transcript: CHN2.iAug05
Exon
Length: 157
Transcript: CHN2.jAug05
Length: 157
Transcript: CHN2.jAug05
Exon
Length: 112
Transcript: CHN2.jAug05
Length: 112
Transcript: CHN2.jAug05
Exon
Length: 156
Transcript: CHN2.jAug05
Length: 156
Transcript: CHN2.jAug05
Intron
Length: 103
Transcript: CHN2.jAug05
Length: 103
Transcript: CHN2.jAug05
Intron
Length: 1541
Transcript: CHN2.jAug05
Length: 1541
Transcript: CHN2.jAug05
Exon
Length: 27
Transcript: CHN2.kAug05
Length: 27
Transcript: CHN2.kAug05
Exon
Length: 138
Transcript: CHN2.kAug05
Length: 138
Transcript: CHN2.kAug05
Exon
Length: 381
Transcript: CHN2.kAug05
Length: 381
Transcript: CHN2.kAug05
Intron
Length: 2406
Transcript: CHN2.kAug05
Length: 2406
Transcript: CHN2.kAug05
Intron
Length: 1935
Transcript: CHN2.kAug05
Length: 1935
Transcript: CHN2.kAug05
Exon
Length: 520
Transcript: CHN2.shed1.aAug05
Length: 520
Transcript: CHN2.shed1.aAug05
Exon
Length: 679
Transcript: CHN2.shed2.aAug05
Length: 679
Transcript: CHN2.shed2.aAug05
Exon
Length: 523
Transcript: CHN2.shed3.aAug05
Length: 523
Transcript: CHN2.shed3.aAug05
Exon
Length: 805
Transcript: CHN2.shed4.aAug05
Length: 805
Transcript: CHN2.shed4.aAug05
CHN2.F1
ATGCTGGAAGAAGCAAGCAG
ATGCTGGAAGAAGCAAGCAG
CHN2.R1
TGATTTCCATATAGGAGGCTGG
TGATTTCCATATAGGAGGCTGG