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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Gene primer pair list
: Primer pairs
Transcript map
: SHBG
Exon
Length: 111
Transcript: SHBG.aAug05
Length: 111
Transcript: SHBG.aAug05
Exon
Length: 92
Transcript: SHBG.aAug05
Length: 92
Transcript: SHBG.aAug05
Exon
Length: 190
Transcript: SHBG.aAug05
Length: 190
Transcript: SHBG.aAug05
Exon
Length: 162
Transcript: SHBG.aAug05
Length: 162
Transcript: SHBG.aAug05
Exon
Length: 160
Transcript: SHBG.aAug05
Length: 160
Transcript: SHBG.aAug05
Exon
Length: 137
Transcript: SHBG.aAug05
Length: 137
Transcript: SHBG.aAug05
Exon
Length: 208
Transcript: SHBG.aAug05
Length: 208
Transcript: SHBG.aAug05
Exon
Length: 179
Transcript: SHBG.aAug05
Length: 179
Transcript: SHBG.aAug05
Intron
Length: 132
Transcript: SHBG.aAug05
Length: 132
Transcript: SHBG.aAug05
Intron
Length: 172
Transcript: SHBG.aAug05
Length: 172
Transcript: SHBG.aAug05
Intron
Length: 330
Transcript: SHBG.aAug05
Length: 330
Transcript: SHBG.aAug05
Intron
Length: 227
Transcript: SHBG.aAug05
Length: 227
Transcript: SHBG.aAug05
Intron
Length: 130
Transcript: SHBG.aAug05
Length: 130
Transcript: SHBG.aAug05
Intron
Length: 736
Transcript: SHBG.aAug05
Length: 736
Transcript: SHBG.aAug05
Intron
Length: 244
Transcript: SHBG.aAug05
Length: 244
Transcript: SHBG.aAug05
Reaction
Expected peak: 387
Associated peak: 403,404,405,406,407,408,409,410,411,412
Repeated 51 time
Molarity: 9.90M
Forward: SHBG.F2
Reverse: SHBG.R2
Expected peak: 387
Associated peak: 403,404,405,406,407,408,409,410,411,412
Repeated 51 time
Molarity: 9.90M
Forward: SHBG.F2
Reverse: SHBG.R2
Exon
Length: 132
Transcript: SHBG.bAug05
Length: 132
Transcript: SHBG.bAug05
Exon
Length: 92
Transcript: SHBG.bAug05
Length: 92
Transcript: SHBG.bAug05
Exon
Length: 190
Transcript: SHBG.bAug05
Length: 190
Transcript: SHBG.bAug05
Exon
Length: 162
Transcript: SHBG.bAug05
Length: 162
Transcript: SHBG.bAug05
Exon
Length: 106
Transcript: SHBG.bAug05
Length: 106
Transcript: SHBG.bAug05
Exon
Length: 137
Transcript: SHBG.bAug05
Length: 137
Transcript: SHBG.bAug05
Exon
Length: 208
Transcript: SHBG.bAug05
Length: 208
Transcript: SHBG.bAug05
Exon
Length: 169
Transcript: SHBG.bAug05
Length: 169
Transcript: SHBG.bAug05
Intron
Length: 132
Transcript: SHBG.bAug05
Length: 132
Transcript: SHBG.bAug05
Intron
Length: 172
Transcript: SHBG.bAug05
Length: 172
Transcript: SHBG.bAug05
Intron
Length: 330
Transcript: SHBG.bAug05
Length: 330
Transcript: SHBG.bAug05
Intron
Length: 281
Transcript: SHBG.bAug05
Length: 281
Transcript: SHBG.bAug05
Intron
Length: 130
Transcript: SHBG.bAug05
Length: 130
Transcript: SHBG.bAug05
Intron
Length: 736
Transcript: SHBG.bAug05
Length: 736
Transcript: SHBG.bAug05
Intron
Length: 244
Transcript: SHBG.bAug05
Length: 244
Transcript: SHBG.bAug05
Reaction
Expected peak: 387
Associated peak: 403,404,405,406,407,408,409,410,411,412
Repeated 51 time
Molarity: 9.90M
Forward: SHBG.F2
Reverse: SHBG.R2
Expected peak: 387
Associated peak: 403,404,405,406,407,408,409,410,411,412
Repeated 51 time
Molarity: 9.90M
Forward: SHBG.F2
Reverse: SHBG.R2
Exon
Length: 356
Transcript: SHBG.cAug05
Length: 356
Transcript: SHBG.cAug05
Exon
Length: 190
Transcript: SHBG.cAug05
Length: 190
Transcript: SHBG.cAug05
Exon
Length: 162
Transcript: SHBG.cAug05
Length: 162
Transcript: SHBG.cAug05
Exon
Length: 160
Transcript: SHBG.cAug05
Length: 160
Transcript: SHBG.cAug05
Exon
Length: 137
Transcript: SHBG.cAug05
Length: 137
Transcript: SHBG.cAug05
Exon
Length: 208
Transcript: SHBG.cAug05
Length: 208
Transcript: SHBG.cAug05
Exon
Length: 169
Transcript: SHBG.cAug05
Length: 169
Transcript: SHBG.cAug05
Intron
Length: 172
Transcript: SHBG.cAug05
Length: 172
Transcript: SHBG.cAug05
Intron
Length: 330
Transcript: SHBG.cAug05
Length: 330
Transcript: SHBG.cAug05
Intron
Length: 227
Transcript: SHBG.cAug05
Length: 227
Transcript: SHBG.cAug05
Intron
Length: 130
Transcript: SHBG.cAug05
Length: 130
Transcript: SHBG.cAug05
Intron
Length: 736
Transcript: SHBG.cAug05
Length: 736
Transcript: SHBG.cAug05
Intron
Length: 244
Transcript: SHBG.cAug05
Length: 244
Transcript: SHBG.cAug05
Reaction
Expected peak: 387
Associated peak: 403,404,405,406,407,408,409,410,411,412
Repeated 51 time
Molarity: 9.90M
Forward: SHBG.F2
Reverse: SHBG.R2
Expected peak: 387
Associated peak: 403,404,405,406,407,408,409,410,411,412
Repeated 51 time
Molarity: 9.90M
Forward: SHBG.F2
Reverse: SHBG.R2
Exon
Length: 139
Transcript: SHBG.dAug05
Length: 139
Transcript: SHBG.dAug05
Exon
Length: 92
Transcript: SHBG.dAug05
Length: 92
Transcript: SHBG.dAug05
Exon
Length: 190
Transcript: SHBG.dAug05
Length: 190
Transcript: SHBG.dAug05
Exon
Length: 162
Transcript: SHBG.dAug05
Length: 162
Transcript: SHBG.dAug05
Exon
Length: 160
Transcript: SHBG.dAug05
Length: 160
Transcript: SHBG.dAug05
Exon
Length: 137
Transcript: SHBG.dAug05
Length: 137
Transcript: SHBG.dAug05
Exon
Length: 169
Transcript: SHBG.dAug05
Length: 169
Transcript: SHBG.dAug05
Intron
Length: 132
Transcript: SHBG.dAug05
Length: 132
Transcript: SHBG.dAug05
Intron
Length: 172
Transcript: SHBG.dAug05
Length: 172
Transcript: SHBG.dAug05
Intron
Length: 330
Transcript: SHBG.dAug05
Length: 330
Transcript: SHBG.dAug05
Intron
Length: 227
Transcript: SHBG.dAug05
Length: 227
Transcript: SHBG.dAug05
Intron
Length: 130
Transcript: SHBG.dAug05
Length: 130
Transcript: SHBG.dAug05
Intron
Length: 1188
Transcript: SHBG.dAug05
Length: 1188
Transcript: SHBG.dAug05
Reaction
Expected peak: 179
Associated peak: 191,192,193
Repeated 51 time
Molarity: 3.80M
Forward: SHBG.F2
Reverse: SHBG.R2
Expected peak: 179
Associated peak: 191,192,193
Repeated 51 time
Molarity: 3.80M
Forward: SHBG.F2
Reverse: SHBG.R2
Exon
Length: 96
Transcript: SHBG.eAug05
Length: 96
Transcript: SHBG.eAug05
Exon
Length: 92
Transcript: SHBG.eAug05
Length: 92
Transcript: SHBG.eAug05
Exon
Length: 190
Transcript: SHBG.eAug05
Length: 190
Transcript: SHBG.eAug05
Exon
Length: 162
Transcript: SHBG.eAug05
Length: 162
Transcript: SHBG.eAug05
Exon
Length: 160
Transcript: SHBG.eAug05
Length: 160
Transcript: SHBG.eAug05
Exon
Length: 137
Transcript: SHBG.eAug05
Length: 137
Transcript: SHBG.eAug05
Exon
Length: 168
Transcript: SHBG.eAug05
Length: 168
Transcript: SHBG.eAug05
Intron
Length: 2264
Transcript: SHBG.eAug05
Length: 2264
Transcript: SHBG.eAug05
Intron
Length: 172
Transcript: SHBG.eAug05
Length: 172
Transcript: SHBG.eAug05
Intron
Length: 330
Transcript: SHBG.eAug05
Length: 330
Transcript: SHBG.eAug05
Intron
Length: 227
Transcript: SHBG.eAug05
Length: 227
Transcript: SHBG.eAug05
Intron
Length: 130
Transcript: SHBG.eAug05
Length: 130
Transcript: SHBG.eAug05
Intron
Length: 1188
Transcript: SHBG.eAug05
Length: 1188
Transcript: SHBG.eAug05
Reaction
Expected peak: 179
Associated peak: 191,192,193
Repeated 51 time
Molarity: 3.80M
Forward: SHBG.F2
Reverse: SHBG.R2
Expected peak: 179
Associated peak: 191,192,193
Repeated 51 time
Molarity: 3.80M
Forward: SHBG.F2
Reverse: SHBG.R2
Exon
Length: 132
Transcript: SHBG.fAug05
Length: 132
Transcript: SHBG.fAug05
Exon
Length: 92
Transcript: SHBG.fAug05
Length: 92
Transcript: SHBG.fAug05
Exon
Length: 152
Transcript: SHBG.fAug05
Length: 152
Transcript: SHBG.fAug05
Exon
Length: 108
Transcript: SHBG.fAug05
Length: 108
Transcript: SHBG.fAug05
Exon
Length: 160
Transcript: SHBG.fAug05
Length: 160
Transcript: SHBG.fAug05
Exon
Length: 137
Transcript: SHBG.fAug05
Length: 137
Transcript: SHBG.fAug05
Exon
Length: 208
Transcript: SHBG.fAug05
Length: 208
Transcript: SHBG.fAug05
Exon
Length: 169
Transcript: SHBG.fAug05
Length: 169
Transcript: SHBG.fAug05
Intron
Length: 132
Transcript: SHBG.fAug05
Length: 132
Transcript: SHBG.fAug05
Intron
Length: 172
Transcript: SHBG.fAug05
Length: 172
Transcript: SHBG.fAug05
Intron
Length: 422
Transcript: SHBG.fAug05
Length: 422
Transcript: SHBG.fAug05
Intron
Length: 227
Transcript: SHBG.fAug05
Length: 227
Transcript: SHBG.fAug05
Intron
Length: 130
Transcript: SHBG.fAug05
Length: 130
Transcript: SHBG.fAug05
Intron
Length: 736
Transcript: SHBG.fAug05
Length: 736
Transcript: SHBG.fAug05
Intron
Length: 244
Transcript: SHBG.fAug05
Length: 244
Transcript: SHBG.fAug05
Reaction
Expected peak: 387
Associated peak: 403,404,405,406,407,408,409,410,411,412
Repeated 51 time
Molarity: 9.90M
Forward: SHBG.F2
Reverse: SHBG.R2
Expected peak: 387
Associated peak: 403,404,405,406,407,408,409,410,411,412
Repeated 51 time
Molarity: 9.90M
Forward: SHBG.F2
Reverse: SHBG.R2
Exon
Length: 14
Transcript: SHBG.gAug05
Length: 14
Transcript: SHBG.gAug05
Exon
Length: 137
Transcript: SHBG.gAug05
Length: 137
Transcript: SHBG.gAug05
Exon
Length: 66
Transcript: SHBG.gAug05
Length: 66
Transcript: SHBG.gAug05
Exon
Length: 172
Transcript: SHBG.gAug05
Length: 172
Transcript: SHBG.gAug05
Intron
Length: 130
Transcript: SHBG.gAug05
Length: 130
Transcript: SHBG.gAug05
Intron
Length: 878
Transcript: SHBG.gAug05
Length: 878
Transcript: SHBG.gAug05
Intron
Length: 244
Transcript: SHBG.gAug05
Length: 244
Transcript: SHBG.gAug05
Reaction
Expected peak: 245
Associated peak: 255,256,257,258
Repeated 51 time
Molarity: 0.31M
Forward: SHBG.F2
Reverse: SHBG.R2
Expected peak: 245
Associated peak: 255,256,257,258
Repeated 51 time
Molarity: 0.31M
Forward: SHBG.F2
Reverse: SHBG.R2
Exon
Length: 39
Transcript: SHBG.hAug05
Length: 39
Transcript: SHBG.hAug05
Exon
Length: 469
Transcript: SHBG.hAug05
Length: 469
Transcript: SHBG.hAug05
Intron
Length: 227
Transcript: SHBG.hAug05
Length: 227
Transcript: SHBG.hAug05
Exon
Length: 575
Transcript: SHBG.shed1.aAug05
Length: 575
Transcript: SHBG.shed1.aAug05
SHBG.R2
GGAGCTTTAATGGGAAGCGT
GGAGCTTTAATGGGAAGCGT
SHBG.F2
CTCAGTCTCCACCTCCAAGATC
CTCAGTCTCCACCTCCAAGATC