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Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: CCNE1
Exon
Length: 159
Transcript: CCNE1.aAug05
Length: 159
Transcript: CCNE1.aAug05
Exon
Length: 47
Transcript: CCNE1.aAug05
Length: 47
Transcript: CCNE1.aAug05
Exon
Length: 88
Transcript: CCNE1.aAug05
Length: 88
Transcript: CCNE1.aAug05
Exon
Length: 69
Transcript: CCNE1.aAug05
Length: 69
Transcript: CCNE1.aAug05
Exon
Length: 146
Transcript: CCNE1.aAug05
Length: 146
Transcript: CCNE1.aAug05
Exon
Length: 136
Transcript: CCNE1.aAug05
Length: 136
Transcript: CCNE1.aAug05
Exon
Length: 147
Transcript: CCNE1.aAug05
Length: 147
Transcript: CCNE1.aAug05
Exon
Length: 96
Transcript: CCNE1.aAug05
Length: 96
Transcript: CCNE1.aAug05
Exon
Length: 135
Transcript: CCNE1.aAug05
Length: 135
Transcript: CCNE1.aAug05
Exon
Length: 112
Transcript: CCNE1.aAug05
Length: 112
Transcript: CCNE1.aAug05
Exon
Length: 158
Transcript: CCNE1.aAug05
Length: 158
Transcript: CCNE1.aAug05
Exon
Length: 663
Transcript: CCNE1.aAug05
Length: 663
Transcript: CCNE1.aAug05
Intron
Length: 379
Transcript: CCNE1.aAug05
Length: 379
Transcript: CCNE1.aAug05
Intron
Length: 110
Transcript: CCNE1.aAug05
Length: 110
Transcript: CCNE1.aAug05
Intron
Length: 192
Transcript: CCNE1.aAug05
Length: 192
Transcript: CCNE1.aAug05
Intron
Length: 4099
Transcript: CCNE1.aAug05
Length: 4099
Transcript: CCNE1.aAug05
Intron
Length: 123
Transcript: CCNE1.aAug05
Length: 123
Transcript: CCNE1.aAug05
Intron
Length: 3160
Transcript: CCNE1.aAug05
Length: 3160
Transcript: CCNE1.aAug05
Intron
Length: 873
Transcript: CCNE1.aAug05
Length: 873
Transcript: CCNE1.aAug05
Intron
Length: 178
Transcript: CCNE1.aAug05
Length: 178
Transcript: CCNE1.aAug05
Intron
Length: 109
Transcript: CCNE1.aAug05
Length: 109
Transcript: CCNE1.aAug05
Intron
Length: 94
Transcript: CCNE1.aAug05
Length: 94
Transcript: CCNE1.aAug05
Intron
Length: 1051
Transcript: CCNE1.aAug05
Length: 1051
Transcript: CCNE1.aAug05
Reaction
Expected peak: 395
Associated peak: 431,433,434,435,436,437,438,439,440,441,442,443,445,447
Repeated 51 time
Molarity: 26.66M
Forward: CCNE1.F14
Reverse: CCNE1.R3
Expected peak: 395
Associated peak: 431,433,434,435,436,437,438,439,440,441,442,443,445,447
Repeated 51 time
Molarity: 26.66M
Forward: CCNE1.F14
Reverse: CCNE1.R3
Exon
Length: 149
Transcript: CCNE1.bAug05
Length: 149
Transcript: CCNE1.bAug05
Exon
Length: 47
Transcript: CCNE1.bAug05
Length: 47
Transcript: CCNE1.bAug05
Exon
Length: 88
Transcript: CCNE1.bAug05
Length: 88
Transcript: CCNE1.bAug05
Exon
Length: 60
Transcript: CCNE1.bAug05
Length: 60
Transcript: CCNE1.bAug05
Exon
Length: 146
Transcript: CCNE1.bAug05
Length: 146
Transcript: CCNE1.bAug05
Exon
Length: 136
Transcript: CCNE1.bAug05
Length: 136
Transcript: CCNE1.bAug05
Exon
Length: 147
Transcript: CCNE1.bAug05
Length: 147
Transcript: CCNE1.bAug05
Exon
Length: 96
Transcript: CCNE1.bAug05
Length: 96
Transcript: CCNE1.bAug05
Exon
Length: 112
Transcript: CCNE1.bAug05
Length: 112
Transcript: CCNE1.bAug05
Exon
Length: 158
Transcript: CCNE1.bAug05
Length: 158
Transcript: CCNE1.bAug05
Exon
Length: 654
Transcript: CCNE1.bAug05
Length: 654
Transcript: CCNE1.bAug05
Intron
Length: 379
Transcript: CCNE1.bAug05
Length: 379
Transcript: CCNE1.bAug05
Intron
Length: 110
Transcript: CCNE1.bAug05
Length: 110
Transcript: CCNE1.bAug05
Intron
Length: 201
Transcript: CCNE1.bAug05
Length: 201
Transcript: CCNE1.bAug05
Intron
Length: 4099
Transcript: CCNE1.bAug05
Length: 4099
Transcript: CCNE1.bAug05
Intron
Length: 123
Transcript: CCNE1.bAug05
Length: 123
Transcript: CCNE1.bAug05
Intron
Length: 3160
Transcript: CCNE1.bAug05
Length: 3160
Transcript: CCNE1.bAug05
Intron
Length: 873
Transcript: CCNE1.bAug05
Length: 873
Transcript: CCNE1.bAug05
Intron
Length: 422
Transcript: CCNE1.bAug05
Length: 422
Transcript: CCNE1.bAug05
Intron
Length: 94
Transcript: CCNE1.bAug05
Length: 94
Transcript: CCNE1.bAug05
Intron
Length: 1051
Transcript: CCNE1.bAug05
Length: 1051
Transcript: CCNE1.bAug05
Reaction
Expected peak: 260
Associated peak: 265,266,267,268,269,270,275,276
Repeated 51 time
Molarity: 3.28M
Forward: CCNE1.F14
Reverse: CCNE1.R3
Expected peak: 260
Associated peak: 265,266,267,268,269,270,275,276
Repeated 51 time
Molarity: 3.28M
Forward: CCNE1.F14
Reverse: CCNE1.R3
Exon
Length: 123
Transcript: CCNE1.cAug05
Length: 123
Transcript: CCNE1.cAug05
Exon
Length: 69
Transcript: CCNE1.cAug05
Length: 69
Transcript: CCNE1.cAug05
Exon
Length: 146
Transcript: CCNE1.cAug05
Length: 146
Transcript: CCNE1.cAug05
Exon
Length: 136
Transcript: CCNE1.cAug05
Length: 136
Transcript: CCNE1.cAug05
Exon
Length: 147
Transcript: CCNE1.cAug05
Length: 147
Transcript: CCNE1.cAug05
Exon
Length: 96
Transcript: CCNE1.cAug05
Length: 96
Transcript: CCNE1.cAug05
Exon
Length: 135
Transcript: CCNE1.cAug05
Length: 135
Transcript: CCNE1.cAug05
Exon
Length: 112
Transcript: CCNE1.cAug05
Length: 112
Transcript: CCNE1.cAug05
Exon
Length: 158
Transcript: CCNE1.cAug05
Length: 158
Transcript: CCNE1.cAug05
Exon
Length: 657
Transcript: CCNE1.cAug05
Length: 657
Transcript: CCNE1.cAug05
Intron
Length: 192
Transcript: CCNE1.cAug05
Length: 192
Transcript: CCNE1.cAug05
Intron
Length: 4099
Transcript: CCNE1.cAug05
Length: 4099
Transcript: CCNE1.cAug05
Intron
Length: 123
Transcript: CCNE1.cAug05
Length: 123
Transcript: CCNE1.cAug05
Intron
Length: 3160
Transcript: CCNE1.cAug05
Length: 3160
Transcript: CCNE1.cAug05
Intron
Length: 873
Transcript: CCNE1.cAug05
Length: 873
Transcript: CCNE1.cAug05
Intron
Length: 178
Transcript: CCNE1.cAug05
Length: 178
Transcript: CCNE1.cAug05
Intron
Length: 109
Transcript: CCNE1.cAug05
Length: 109
Transcript: CCNE1.cAug05
Intron
Length: 94
Transcript: CCNE1.cAug05
Length: 94
Transcript: CCNE1.cAug05
Intron
Length: 1051
Transcript: CCNE1.cAug05
Length: 1051
Transcript: CCNE1.cAug05
Reaction
Expected peak: 395
Associated peak: 431,433,434,435,436,437,438,439,440,441,442,443,445,447
Repeated 51 time
Molarity: 26.66M
Forward: CCNE1.F14
Reverse: CCNE1.R3
Expected peak: 395
Associated peak: 431,433,434,435,436,437,438,439,440,441,442,443,445,447
Repeated 51 time
Molarity: 26.66M
Forward: CCNE1.F14
Reverse: CCNE1.R3
Exon
Length: 30
Transcript: CCNE1.dAug05
Length: 30
Transcript: CCNE1.dAug05
Exon
Length: 146
Transcript: CCNE1.dAug05
Length: 146
Transcript: CCNE1.dAug05
Exon
Length: 136
Transcript: CCNE1.dAug05
Length: 136
Transcript: CCNE1.dAug05
Exon
Length: 96
Transcript: CCNE1.dAug05
Length: 96
Transcript: CCNE1.dAug05
Exon
Length: 135
Transcript: CCNE1.dAug05
Length: 135
Transcript: CCNE1.dAug05
Exon
Length: 112
Transcript: CCNE1.dAug05
Length: 112
Transcript: CCNE1.dAug05
Intron
Length: 4099
Transcript: CCNE1.dAug05
Length: 4099
Transcript: CCNE1.dAug05
Intron
Length: 123
Transcript: CCNE1.dAug05
Length: 123
Transcript: CCNE1.dAug05
Intron
Length: 4180
Transcript: CCNE1.dAug05
Length: 4180
Transcript: CCNE1.dAug05
Intron
Length: 178
Transcript: CCNE1.dAug05
Length: 178
Transcript: CCNE1.dAug05
Intron
Length: 109
Transcript: CCNE1.dAug05
Length: 109
Transcript: CCNE1.dAug05
Exon
Length: 399
Transcript: CCNE1.eAug05
Length: 399
Transcript: CCNE1.eAug05
Exon
Length: 112
Transcript: CCNE1.eAug05
Length: 112
Transcript: CCNE1.eAug05
Exon
Length: 158
Transcript: CCNE1.eAug05
Length: 158
Transcript: CCNE1.eAug05
Exon
Length: 626
Transcript: CCNE1.eAug05
Length: 626
Transcript: CCNE1.eAug05
Intron
Length: 109
Transcript: CCNE1.eAug05
Length: 109
Transcript: CCNE1.eAug05
Intron
Length: 94
Transcript: CCNE1.eAug05
Length: 94
Transcript: CCNE1.eAug05
Intron
Length: 1051
Transcript: CCNE1.eAug05
Length: 1051
Transcript: CCNE1.eAug05
Exon
Length: 110
Transcript: CCNE1.fAug05
Length: 110
Transcript: CCNE1.fAug05
Exon
Length: 52
Transcript: CCNE1.fAug05
Length: 52
Transcript: CCNE1.fAug05
Exon
Length: 363
Transcript: CCNE1.fAug05
Length: 363
Transcript: CCNE1.fAug05
Intron
Length: 611
Transcript: CCNE1.fAug05
Length: 611
Transcript: CCNE1.fAug05
Intron
Length: 192
Transcript: CCNE1.fAug05
Length: 192
Transcript: CCNE1.fAug05
Exon
Length: 200
Transcript: CCNE1.shed1.aAug05
Length: 200
Transcript: CCNE1.shed1.aAug05
Exon
Length: 262
Transcript: CCNE1.shed2.aAug05
Length: 262
Transcript: CCNE1.shed2.aAug05
CCNE1.F14
CACAGGGAGACCTTTTACTTGG
CACAGGGAGACCTTTTACTTGG
CCNE1.R3
TCAAGGCAGTCAACATCCAG
TCAAGGCAGTCAACATCCAG