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Identification of alternative splicing markers for breast cancer
2. Breast Validation Screen
Transcript map
: BMX
Exon
Length: 366
Transcript: BMX.aAug05
Length: 366
Transcript: BMX.aAug05
Exon
Length: 147
Transcript: BMX.aAug05
Length: 147
Transcript: BMX.aAug05
Exon
Length: 105
Transcript: BMX.aAug05
Length: 105
Transcript: BMX.aAug05
Exon
Length: 82
Transcript: BMX.aAug05
Length: 82
Transcript: BMX.aAug05
Exon
Length: 120
Transcript: BMX.aAug05
Length: 120
Transcript: BMX.aAug05
Exon
Length: 65
Transcript: BMX.aAug05
Length: 65
Transcript: BMX.aAug05
Exon
Length: 242
Transcript: BMX.aAug05
Length: 242
Transcript: BMX.aAug05
Exon
Length: 78
Transcript: BMX.aAug05
Length: 78
Transcript: BMX.aAug05
Exon
Length: 54
Transcript: BMX.aAug05
Length: 54
Transcript: BMX.aAug05
Exon
Length: 55
Transcript: BMX.aAug05
Length: 55
Transcript: BMX.aAug05
Exon
Length: 80
Transcript: BMX.aAug05
Length: 80
Transcript: BMX.aAug05
Exon
Length: 128
Transcript: BMX.aAug05
Length: 128
Transcript: BMX.aAug05
Exon
Length: 75
Transcript: BMX.aAug05
Length: 75
Transcript: BMX.aAug05
Exon
Length: 172
Transcript: BMX.aAug05
Length: 172
Transcript: BMX.aAug05
Exon
Length: 217
Transcript: BMX.aAug05
Length: 217
Transcript: BMX.aAug05
Exon
Length: 65
Transcript: BMX.aAug05
Length: 65
Transcript: BMX.aAug05
Exon
Length: 119
Transcript: BMX.aAug05
Length: 119
Transcript: BMX.aAug05
Exon
Length: 158
Transcript: BMX.aAug05
Length: 158
Transcript: BMX.aAug05
Exon
Length: 457
Transcript: BMX.aAug05
Length: 457
Transcript: BMX.aAug05
Intron
Length: 7404
Transcript: BMX.aAug05
Length: 7404
Transcript: BMX.aAug05
Intron
Length: 837
Transcript: BMX.aAug05
Length: 837
Transcript: BMX.aAug05
Intron
Length: 2003
Transcript: BMX.aAug05
Length: 2003
Transcript: BMX.aAug05
Intron
Length: 4593
Transcript: BMX.aAug05
Length: 4593
Transcript: BMX.aAug05
Intron
Length: 1697
Transcript: BMX.aAug05
Length: 1697
Transcript: BMX.aAug05
Intron
Length: 4352
Transcript: BMX.aAug05
Length: 4352
Transcript: BMX.aAug05
Intron
Length: 2700
Transcript: BMX.aAug05
Length: 2700
Transcript: BMX.aAug05
Intron
Length: 676
Transcript: BMX.aAug05
Length: 676
Transcript: BMX.aAug05
Intron
Length: 3877
Transcript: BMX.aAug05
Length: 3877
Transcript: BMX.aAug05
Intron
Length: 1300
Transcript: BMX.aAug05
Length: 1300
Transcript: BMX.aAug05
Intron
Length: 2804
Transcript: BMX.aAug05
Length: 2804
Transcript: BMX.aAug05
Intron
Length: 2013
Transcript: BMX.aAug05
Length: 2013
Transcript: BMX.aAug05
Intron
Length: 706
Transcript: BMX.aAug05
Length: 706
Transcript: BMX.aAug05
Intron
Length: 4676
Transcript: BMX.aAug05
Length: 4676
Transcript: BMX.aAug05
Intron
Length: 872
Transcript: BMX.aAug05
Length: 872
Transcript: BMX.aAug05
Intron
Length: 3667
Transcript: BMX.aAug05
Length: 3667
Transcript: BMX.aAug05
Intron
Length: 2918
Transcript: BMX.aAug05
Length: 2918
Transcript: BMX.aAug05
Intron
Length: 6075
Transcript: BMX.aAug05
Length: 6075
Transcript: BMX.aAug05
Reaction
Expected peak: 243
Associated peak: 256,257,258,259,260,268,269
Repeated 51 time
Molarity: 28.91M
Forward: BMX.F2
Reverse: BMX.R2
Expected peak: 243
Associated peak: 256,257,258,259,260,268,269
Repeated 51 time
Molarity: 28.91M
Forward: BMX.F2
Reverse: BMX.R2
Exon
Length: 192
Transcript: BMX.bAug05
Length: 192
Transcript: BMX.bAug05
Exon
Length: 147
Transcript: BMX.bAug05
Length: 147
Transcript: BMX.bAug05
Exon
Length: 105
Transcript: BMX.bAug05
Length: 105
Transcript: BMX.bAug05
Exon
Length: 82
Transcript: BMX.bAug05
Length: 82
Transcript: BMX.bAug05
Exon
Length: 120
Transcript: BMX.bAug05
Length: 120
Transcript: BMX.bAug05
Exon
Length: 65
Transcript: BMX.bAug05
Length: 65
Transcript: BMX.bAug05
Exon
Length: 242
Transcript: BMX.bAug05
Length: 242
Transcript: BMX.bAug05
Exon
Length: 78
Transcript: BMX.bAug05
Length: 78
Transcript: BMX.bAug05
Exon
Length: 54
Transcript: BMX.bAug05
Length: 54
Transcript: BMX.bAug05
Exon
Length: 55
Transcript: BMX.bAug05
Length: 55
Transcript: BMX.bAug05
Exon
Length: 80
Transcript: BMX.bAug05
Length: 80
Transcript: BMX.bAug05
Exon
Length: 128
Transcript: BMX.bAug05
Length: 128
Transcript: BMX.bAug05
Exon
Length: 75
Transcript: BMX.bAug05
Length: 75
Transcript: BMX.bAug05
Exon
Length: 172
Transcript: BMX.bAug05
Length: 172
Transcript: BMX.bAug05
Exon
Length: 217
Transcript: BMX.bAug05
Length: 217
Transcript: BMX.bAug05
Exon
Length: 65
Transcript: BMX.bAug05
Length: 65
Transcript: BMX.bAug05
Exon
Length: 119
Transcript: BMX.bAug05
Length: 119
Transcript: BMX.bAug05
Exon
Length: 158
Transcript: BMX.bAug05
Length: 158
Transcript: BMX.bAug05
Exon
Length: 456
Transcript: BMX.bAug05
Length: 456
Transcript: BMX.bAug05
Intron
Length: 43920
Transcript: BMX.bAug05
Length: 43920
Transcript: BMX.bAug05
Intron
Length: 837
Transcript: BMX.bAug05
Length: 837
Transcript: BMX.bAug05
Intron
Length: 2003
Transcript: BMX.bAug05
Length: 2003
Transcript: BMX.bAug05
Intron
Length: 4593
Transcript: BMX.bAug05
Length: 4593
Transcript: BMX.bAug05
Intron
Length: 1697
Transcript: BMX.bAug05
Length: 1697
Transcript: BMX.bAug05
Intron
Length: 4352
Transcript: BMX.bAug05
Length: 4352
Transcript: BMX.bAug05
Intron
Length: 2700
Transcript: BMX.bAug05
Length: 2700
Transcript: BMX.bAug05
Intron
Length: 676
Transcript: BMX.bAug05
Length: 676
Transcript: BMX.bAug05
Intron
Length: 3877
Transcript: BMX.bAug05
Length: 3877
Transcript: BMX.bAug05
Intron
Length: 1300
Transcript: BMX.bAug05
Length: 1300
Transcript: BMX.bAug05
Intron
Length: 2804
Transcript: BMX.bAug05
Length: 2804
Transcript: BMX.bAug05
Intron
Length: 2013
Transcript: BMX.bAug05
Length: 2013
Transcript: BMX.bAug05
Intron
Length: 706
Transcript: BMX.bAug05
Length: 706
Transcript: BMX.bAug05
Intron
Length: 4676
Transcript: BMX.bAug05
Length: 4676
Transcript: BMX.bAug05
Intron
Length: 872
Transcript: BMX.bAug05
Length: 872
Transcript: BMX.bAug05
Intron
Length: 3667
Transcript: BMX.bAug05
Length: 3667
Transcript: BMX.bAug05
Intron
Length: 2918
Transcript: BMX.bAug05
Length: 2918
Transcript: BMX.bAug05
Intron
Length: 6075
Transcript: BMX.bAug05
Length: 6075
Transcript: BMX.bAug05
Reaction
Expected peak: 243
Associated peak: 256,257,258,259,260,268,269
Repeated 51 time
Molarity: 28.91M
Forward: BMX.F2
Reverse: BMX.R2
Expected peak: 243
Associated peak: 256,257,258,259,260,268,269
Repeated 51 time
Molarity: 28.91M
Forward: BMX.F2
Reverse: BMX.R2
Exon
Length: 117
Transcript: BMX.cAug05
Length: 117
Transcript: BMX.cAug05
Exon
Length: 147
Transcript: BMX.cAug05
Length: 147
Transcript: BMX.cAug05
Exon
Length: 105
Transcript: BMX.cAug05
Length: 105
Transcript: BMX.cAug05
Exon
Length: 82
Transcript: BMX.cAug05
Length: 82
Transcript: BMX.cAug05
Exon
Length: 120
Transcript: BMX.cAug05
Length: 120
Transcript: BMX.cAug05
Exon
Length: 65
Transcript: BMX.cAug05
Length: 65
Transcript: BMX.cAug05
Exon
Length: 242
Transcript: BMX.cAug05
Length: 242
Transcript: BMX.cAug05
Exon
Length: 78
Transcript: BMX.cAug05
Length: 78
Transcript: BMX.cAug05
Exon
Length: 54
Transcript: BMX.cAug05
Length: 54
Transcript: BMX.cAug05
Exon
Length: 55
Transcript: BMX.cAug05
Length: 55
Transcript: BMX.cAug05
Exon
Length: 80
Transcript: BMX.cAug05
Length: 80
Transcript: BMX.cAug05
Exon
Length: 128
Transcript: BMX.cAug05
Length: 128
Transcript: BMX.cAug05
Exon
Length: 75
Transcript: BMX.cAug05
Length: 75
Transcript: BMX.cAug05
Exon
Length: 172
Transcript: BMX.cAug05
Length: 172
Transcript: BMX.cAug05
Exon
Length: 217
Transcript: BMX.cAug05
Length: 217
Transcript: BMX.cAug05
Exon
Length: 65
Transcript: BMX.cAug05
Length: 65
Transcript: BMX.cAug05
Exon
Length: 119
Transcript: BMX.cAug05
Length: 119
Transcript: BMX.cAug05
Exon
Length: 158
Transcript: BMX.cAug05
Length: 158
Transcript: BMX.cAug05
Exon
Length: 457
Transcript: BMX.cAug05
Length: 457
Transcript: BMX.cAug05
Intron
Length: 935
Transcript: BMX.cAug05
Length: 935
Transcript: BMX.cAug05
Intron
Length: 837
Transcript: BMX.cAug05
Length: 837
Transcript: BMX.cAug05
Intron
Length: 2003
Transcript: BMX.cAug05
Length: 2003
Transcript: BMX.cAug05
Intron
Length: 4593
Transcript: BMX.cAug05
Length: 4593
Transcript: BMX.cAug05
Intron
Length: 1697
Transcript: BMX.cAug05
Length: 1697
Transcript: BMX.cAug05
Intron
Length: 4352
Transcript: BMX.cAug05
Length: 4352
Transcript: BMX.cAug05
Intron
Length: 2700
Transcript: BMX.cAug05
Length: 2700
Transcript: BMX.cAug05
Intron
Length: 676
Transcript: BMX.cAug05
Length: 676
Transcript: BMX.cAug05
Intron
Length: 3877
Transcript: BMX.cAug05
Length: 3877
Transcript: BMX.cAug05
Intron
Length: 1300
Transcript: BMX.cAug05
Length: 1300
Transcript: BMX.cAug05
Intron
Length: 2804
Transcript: BMX.cAug05
Length: 2804
Transcript: BMX.cAug05
Intron
Length: 2013
Transcript: BMX.cAug05
Length: 2013
Transcript: BMX.cAug05
Intron
Length: 706
Transcript: BMX.cAug05
Length: 706
Transcript: BMX.cAug05
Intron
Length: 4676
Transcript: BMX.cAug05
Length: 4676
Transcript: BMX.cAug05
Intron
Length: 872
Transcript: BMX.cAug05
Length: 872
Transcript: BMX.cAug05
Intron
Length: 3667
Transcript: BMX.cAug05
Length: 3667
Transcript: BMX.cAug05
Intron
Length: 2918
Transcript: BMX.cAug05
Length: 2918
Transcript: BMX.cAug05
Intron
Length: 6075
Transcript: BMX.cAug05
Length: 6075
Transcript: BMX.cAug05
Reaction
Expected peak: 243
Associated peak: 256,257,258,259,260,268,269
Repeated 51 time
Molarity: 28.91M
Forward: BMX.F2
Reverse: BMX.R2
Expected peak: 243
Associated peak: 256,257,258,259,260,268,269
Repeated 51 time
Molarity: 28.91M
Forward: BMX.F2
Reverse: BMX.R2
Exon
Length: 10
Transcript: BMX.dAug05
Length: 10
Transcript: BMX.dAug05
Exon
Length: 78
Transcript: BMX.dAug05
Length: 78
Transcript: BMX.dAug05
Exon
Length: 54
Transcript: BMX.dAug05
Length: 54
Transcript: BMX.dAug05
Exon
Length: 55
Transcript: BMX.dAug05
Length: 55
Transcript: BMX.dAug05
Exon
Length: 80
Transcript: BMX.dAug05
Length: 80
Transcript: BMX.dAug05
Exon
Length: 128
Transcript: BMX.dAug05
Length: 128
Transcript: BMX.dAug05
Exon
Length: 75
Transcript: BMX.dAug05
Length: 75
Transcript: BMX.dAug05
Exon
Length: 172
Transcript: BMX.dAug05
Length: 172
Transcript: BMX.dAug05
Exon
Length: 181
Transcript: BMX.dAug05
Length: 181
Transcript: BMX.dAug05
Intron
Length: 518
Transcript: BMX.dAug05
Length: 518
Transcript: BMX.dAug05
Intron
Length: 676
Transcript: BMX.dAug05
Length: 676
Transcript: BMX.dAug05
Intron
Length: 3877
Transcript: BMX.dAug05
Length: 3877
Transcript: BMX.dAug05
Intron
Length: 1300
Transcript: BMX.dAug05
Length: 1300
Transcript: BMX.dAug05
Intron
Length: 2804
Transcript: BMX.dAug05
Length: 2804
Transcript: BMX.dAug05
Intron
Length: 2013
Transcript: BMX.dAug05
Length: 2013
Transcript: BMX.dAug05
Intron
Length: 706
Transcript: BMX.dAug05
Length: 706
Transcript: BMX.dAug05
Intron
Length: 4676
Transcript: BMX.dAug05
Length: 4676
Transcript: BMX.dAug05
Reaction
Expected peak: 243
Associated peak: 256,257,258,259,260,268,269
Repeated 51 time
Molarity: 28.91M
Forward: BMX.F2
Reverse: BMX.R2
Expected peak: 243
Associated peak: 256,257,258,259,260,268,269
Repeated 51 time
Molarity: 28.91M
Forward: BMX.F2
Reverse: BMX.R2
Exon
Length: 96
Transcript: BMX.eAug05
Length: 96
Transcript: BMX.eAug05
Exon
Length: 116
Transcript: BMX.eAug05
Length: 116
Transcript: BMX.eAug05
Exon
Length: 105
Transcript: BMX.eAug05
Length: 105
Transcript: BMX.eAug05
Exon
Length: 82
Transcript: BMX.eAug05
Length: 82
Transcript: BMX.eAug05
Exon
Length: 120
Transcript: BMX.eAug05
Length: 120
Transcript: BMX.eAug05
Exon
Length: 35
Transcript: BMX.eAug05
Length: 35
Transcript: BMX.eAug05
Intron
Length: 966
Transcript: BMX.eAug05
Length: 966
Transcript: BMX.eAug05
Intron
Length: 837
Transcript: BMX.eAug05
Length: 837
Transcript: BMX.eAug05
Intron
Length: 2003
Transcript: BMX.eAug05
Length: 2003
Transcript: BMX.eAug05
Intron
Length: 4593
Transcript: BMX.eAug05
Length: 4593
Transcript: BMX.eAug05
Intron
Length: 1697
Transcript: BMX.eAug05
Length: 1697
Transcript: BMX.eAug05
Exon
Length: 78
Transcript: BMX.fAug05
Length: 78
Transcript: BMX.fAug05
Exon
Length: 54
Transcript: BMX.fAug05
Length: 54
Transcript: BMX.fAug05
Exon
Length: 55
Transcript: BMX.fAug05
Length: 55
Transcript: BMX.fAug05
Exon
Length: 80
Transcript: BMX.fAug05
Length: 80
Transcript: BMX.fAug05
Exon
Length: 75
Transcript: BMX.fAug05
Length: 75
Transcript: BMX.fAug05
Exon
Length: 172
Transcript: BMX.fAug05
Length: 172
Transcript: BMX.fAug05
Intron
Length: 676
Transcript: BMX.fAug05
Length: 676
Transcript: BMX.fAug05
Intron
Length: 3877
Transcript: BMX.fAug05
Length: 3877
Transcript: BMX.fAug05
Intron
Length: 1300
Transcript: BMX.fAug05
Length: 1300
Transcript: BMX.fAug05
Intron
Length: 4945
Transcript: BMX.fAug05
Length: 4945
Transcript: BMX.fAug05
Intron
Length: 706
Transcript: BMX.fAug05
Length: 706
Transcript: BMX.fAug05
Reaction
Expected peak: 115
Associated peak: 128
Repeated 51 time
Molarity: 0.05M
Forward: BMX.F2
Reverse: BMX.R2
Expected peak: 115
Associated peak: 128
Repeated 51 time
Molarity: 0.05M
Forward: BMX.F2
Reverse: BMX.R2
BMX.R2
CCAGGGACACAGAGTCGG
CCAGGGACACAGAGTCGG
BMX.F2
GCCAAGTGGGAATGTACACAG
GCCAAGTGGGAATGTACACAG