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Home Supplementary data Tumor microenvironment associated modifications of alternative splicing Assay reliability FF and FFPE match sample set permalink
FF and FFPE match sample set ⚙
QPCR Primer Pair List : primer pair list
Gene Forward Reverse
VIEW AHNAK/AHNAK AHNAK_G_f AHNAK_G_r
VIEW AKT1/AKT1 AKT1_G_f AKT1_global_r
VIEW B2M B2M_G_3_f B2M_G_3_r
VIEW BMP1/BMP1 BMP1_G_1_f BMP1_G_1_r
VIEW BMP7/BMP7 BMP7_G_f BMP7_G_r
VIEW CAMK2N1/CAMK2N1 CAMK2N1_G_f CAMK2N1_G_r
VIEW CDH1/CDH1 CDH1_G_f CDH1_G_r
VIEW CDH2/CDH2 CDH2_G_f CDH2_G_r
VIEW COL1A2/COL1A2 COL1A2_G_f COL1A2_G_r
VIEW COL3A1/COL3A1 COL3A1_G_1_f COL3A1_G_r
VIEW COL5A2/COL5A2 COL5A2_G_f COL5A2_G_r
VIEW CTNNB1/CTNNB1 CTNNB1_G_f CTNNB1_G_r
VIEW DSC2/DSC2 DSC2_G_f DSC2_G_r
VIEW DSP/DSP DSP_G_1_f DSP_G_r
VIEW ERBB3/ERBB3 ERBB3_G_f ERBB3_G_r
VIEW ESR1/ESR1 ESR1_G_f ESR1_G_1_r
VIEW F11R/F11R F11R_G_f F11R_G_r
VIEW FN1/FN1 FN1_G_f FN1_G_r
VIEW FN1/FN1 FN1_L_f FN1_cass_L_2_r
VIEW FN1/FN1 FN1_cass_S_5_f FN1_cass_S_1_r
QPCR Primer Pair List : event list
Short Long
VIEW FN1_cass_S_5_f FN1_cass_S_1_r FN1_L_f FN1_cass_L_2_r
VIEW ITGA6_S_1_f ITGA6_S_r ITGA6_L_f ITGA6_L_1_r
QPCR Relative Expression Quantification : Summary

Expression Table

ID Name
1 OVN 250
2 OVN 262
3 OVN 264
4 OVN 385
5 OVC 189
6 OVC 203
7 OVC 278
8 OVC 328
9 OVN 250;FF AMP
10 OVN 262;FF AMP
11 OVN 264;FF AMP
12 OVN 385;FF AMP
13 OVC 189;FF AMP
14 OVC 203;FF AMP
15 OVC 278;FF AMP
16 OVC 328;FF AMP
17 OVN 250 B;FFPE AMP
18 OVN 262 B;FFPE AMP
19 OVN 264 B;FFPE AMP
20 OVN 385 B;FFPE AMP
Primer Pair S1 S2 S3 S4 S5 S6 S7 S8 S9 S10 S11 S12 S13 S14 S15 S16 S17 S18 S19 S20 S21 S22 S23 S24
AHNAK_G_f AHNAK_G_r 0.829 1.215 0.825 1.131 0.344 0.581 0.478 0.408 0.108 0.074 0.143 0.115 0.070 0.059 0.078 0.062 0.314 0.456 0.363 0.197 0.093 0.047 0.169 0.131
AKT1_G_f AKT1_global_r 1.129 1.072 0.854 0.945 1.048 0.930 0.555 1.054 0.353 0.148 0.305 0.328 0.149 0.296 0.186 0.306 0.134 0.141 0.137 0.339 0.100 0.253 0.151 0.407
BMP1_G_1_f BMP1_G_1_r 1.295 0.710 0.995 2.681 0.835 0.758 1.059 0.658 0.584 0.415 0.743 0.647 1.114 0.756 0.757 0.536 1.569 0.315 3.254 0.958 0.839 0.966 2.270
BMP7_G_f BMP7_G_r 1.000 0.217 0.057 0.084 0.501 0.687 0.184 0.037 3.470 0.129 0.806 0.183
CAMK2N1_G_f CAMK2N1_G_r 0.941 0.871 1.124 1.064 1.106 0.415 0.053 0.199 0.239 0.275 0.259 0.218 0.094 0.257 0.013 0.065 0.410 0.286 0.182 0.504 0.213 0.811 0.039 0.146
CDH1_G_f CDH1_G_r 1.682 1.012 0.527 0.779 10.440 5.408 4.999 11.069 3.220 1.169 1.987 1.499 13.018 18.059 8.570 20.000 0.019 0.252 1.580 8.750 2.674 7.748 4.041 9.525
CDH2_G_f CDH2_G_r 0.664 1.087 1.128 1.121 4.960 0.753 0.284 0.712 0.081 0.101 0.184 0.144 0.095 0.670 0.046 0.150 0.127 0.109 0.333 0.426 0.091 1.448 0.118 0.579
COL1A2_G_f COL1A2_G_r 1.072 1.040 0.932 0.956 6.273 0.823 0.084 0.429 0.695 0.161 0.726 0.771 0.566 3.165 0.070 0.336 0.106 0.200 0.200 0.809 0.092 0.132 0.035 0.070
COL3A1_G_1_f COL3A1_G_r 1.143 1.037 0.651 1.169 7.345 1.214 0.072 0.846 0.101 0.036 0.030 0.067 0.043 0.204 0.001 0.026 0.006 0.135 0.067 0.386 0.104 0.108 0.048 0.101
COL5A2_G_f COL5A2_G_r 1.307 0.728 0.888 1.076 2.446 0.893 0.056 0.446 0.098 0.094 0.060 0.076 0.091 0.271 0.007 0.053 0.092 0.012 0.276 0.122 0.147 0.042 0.065
CTNNB1_G_f CTNNB1_G_r 1.093 0.916 0.984 1.007 0.993 0.343 0.313 0.378 0.265 0.049 0.263 0.191 0.063 0.084 0.066 0.076 0.056 0.095 0.065 0.469 0.083 0.153 0.165 0.186
DSC2_G_f DSC2_G_r 1.000 21.241 12.334 4.512 6.175 0.103 0.193 0.119 0.122 0.802 0.965 0.653 0.705 0.089 0.516 0.455 3.821 0.625 1.228
DSP_G_1_f DSP_G_r 1.016 1.225 0.711 1.049 20.249 7.748 4.441 3.305 0.427 0.357 0.385 0.388 2.942 4.948 2.562 1.416 0.265 1.955 1.150 1.447 4.725 1.285 1.155
ERBB3_G_f ERBB3_G_r 1.004 4.378 2.637 2.343 0.066 0.012 0.081 0.172 1.989 0.521 1.428 1.350 1.000 0.812 0.299 0.582 0.692
ESR1_G_f ESR1_G_1_r 1.104 0.896 1.086 0.914 0.386 0.663 0.899 1.781 2.326 0.637 1.720 1.708 1.204 0.407 2.012 2.146 0.955 0.931 1.456 0.403 0.411 0.880 2.323
F11R_G_f F11R_G_r 0.737 0.723 1.156 1.384 1.566 2.429 1.385 2.688 1.416 1.851 2.328 1.736 4.760 2.994 2.598 4.141 1.146 1.357 2.023 3.067 2.385 1.988 1.504 4.916
FN1_G_f FN1_G_r 0.889 1.250 1.061 0.800 2.891 1.621 0.028 0.801 0.248 0.172 0.323 0.297 0.549 1.014 0.010 0.262 0.608 0.686 0.514 1.556 0.462 0.587 0.055 0.436
FN1_L_f FN1_cass_L_2_r 0.887 1.001 1.150 0.962 3.462 0.926 0.033 0.751 0.405 0.258 0.639 0.511 0.718 1.815 0.028 0.464 0.523 0.833 0.691 2.053 0.326 0.560 0.042 0.201
FN1_cass_S_5_f FN1_cass_S_1_r 1.064 1.052 0.884 2.932 1.976 1.205 0.688 1.051 1.455 1.061 3.182 3.548 0.048 1.504 2.704 2.764 2.407 3.163 3.403 1.585 0.324 1.169
FOXC2_G_f FOXC2_G_r 12.792 0.250 1.342 3.499 0.870 0.183 0.424 1.000 404.307 149.738 33.028 1.636 2.756
QPCR Relative Expression Quantification (grouped) : Summary

Expression Table

ID Name
1 OVC
2 OVCFF AMP
3 OVCFFPE AMP
4 OVN
5 OVNFF AMP
6 OVNFFPE AMP
Primer Pair S1 p1 q1 S2 p2 q2 S3 p3 q3 S4 p4 q4 S5 p5 q5 S6 p6 q6
AHNAK_G_f AHNAK_G_r 0.453 6.64e-03 8.01e-03 0.067 2.69e-03 1.08e-03 0.110 2.10e-03 1.000 0.110 2.77e-03 0.333 2.87e-03 2.41e-03
AKT1_G_f AKT1_global_r 0.897 4.75e-01 1.17e-01 0.234 1.29e-04 1.20e-04 0.228 1.61e-04 1.000 0.283 1.40e-04 0.188 6.83e-05 3.67e-04
BMP1_G_1_f BMP1_G_1_r 1.333 5.31e-01 1.22e-01 0.819 4.18e-01 5.57e-02 1.258 5.30e-01 1.000 0.600 1.27e-01 1.418 5.83e-01 1.67e-01
BMP7_G_f BMP7_G_r 0.288 0.101 0.107 0.034 1.000
CAMK2N1_G_f CAMK2N1_G_r 0.443 9.37e-02 4.04e-02 0.107 2.82e-05 7.52e-05 0.302 2.21e-02 1.000 0.248 6.60e-04 0.345 4.34e-04 7.71e-04
CDH1_G_f CDH1_G_r 7.979 2.13e-02 1.39e-02 14.912 1.20e-02 2.98e-03 5.997 4.99e-02 1.000 1.969 1.22e-01 2.650 4.83e-01 1.44e-01
CDH2_G_f CDH2_G_r 1.677 5.83e-01 1.28e-01 0.241 6.87e-03 2.13e-03 0.559 2.64e-01 1.000 0.127 3.54e-03 0.249 2.20e-03 2.14e-03
COL1A2_G_f COL1A2_G_r 1.902 5.82e-01 1.28e-01 1.034 9.65e-01 1.18e-01 0.082 2.91e-06 1.000 0.588 6.04e-02 0.329 2.30e-02 1.09e-02
COL3A1_G_1_f COL3A1_G_r 2.369 4.74e-01 1.17e-01 0.069 2.20e-03 1.03e-03 0.090 4.40e-03 1.000 0.058 3.88e-03 0.148 1.66e-03 1.94e-03
COL5A2_G_f COL5A2_G_r 0.960 9.46e-01 1.63e-01 0.106 2.36e-03 1.03e-03 0.094 4.42e-03 1.000 0.082 5.05e-03 0.126 2.34e-03 2.14e-03
CTNNB1_G_f CTNNB1_G_r 0.507 5.30e-02 2.61e-02 0.072 1.07e-04 1.14e-04 0.147 6.04e-06 1.000 0.192 2.74e-05 0.171 1.81e-03 1.96e-03
DSC2_G_f DSC2_G_r 11.066 0.782 1.532 1.000 0.134 0.303
DSP_G_1_f DSP_G_r 8.936 1.34e-01 4.91e-02 2.967 7.40e-02 1.28e-02 2.153 2.73e-01 1.000 0.389 9.88e-03 1.123 8.26e-01 2.12e-01
ERBB3_G_f ERBB3_G_r 2.590 1.322 0.596 0.083 1.000
ESR1_G_f ESR1_G_1_r 0.932 8.38e-01 1.47e-01 1.442 3.54e-01 4.88e-02 1.204 7.57e-01 1.000 1.598 1.87e-01 0.936 7.91e-01 2.10e-01
F11R_G_f F11R_G_r 2.017 4.14e-02 2.14e-02 3.623 9.74e-03 2.59e-03 2.699 1.09e-01 1.000 1.833 1.62e-02 1.898 1.27e-01 4.26e-02
FN1_G_f FN1_G_r 1.335 6.25e-01 1.29e-01 0.459 8.10e-02 1.37e-02 0.385 7.02e-03 1.000 0.260 2.94e-03 0.841 5.75e-01 1.67e-01
FN1_L_f FN1_cass_L_2_r 1.293 7.22e-01 1.36e-01 0.756 5.69e-01 7.31e-02 0.282 3.03e-03 1.000 0.453 2.10e-03 1.025 9.48e-01 2.35e-01
FN1_cass_S_5_f FN1_cass_S_1_r 2.038 1.72e-01 5.39e-02 2.071 2.77e-01 3.92e-02 1.620 4.11e-01 1.000 1.064 7.24e-01 2.760 5.97e-04 9.04e-04
FOXC2_G_f FOXC2_G_r 1.000 0.042 0.975 0.117 21.657
QPCR QPSI
QPCR QPSI (grouped)
QPCR Reference Gene Page : .

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