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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
1. Breast Discovery Screen
Transcript map
: AFF3
Exon
Length: 92
Transcript: AFF3.aAug05
Length: 92
Transcript: AFF3.aAug05
Exon
Length: 80
Transcript: AFF3.aAug05
Length: 80
Transcript: AFF3.aAug05
Exon
Length: 117
Transcript: AFF3.aAug05
Length: 117
Transcript: AFF3.aAug05
Exon
Length: 121
Transcript: AFF3.aAug05
Length: 121
Transcript: AFF3.aAug05
Exon
Length: 313
Transcript: AFF3.aAug05
Length: 313
Transcript: AFF3.aAug05
Exon
Length: 386
Transcript: AFF3.aAug05
Length: 386
Transcript: AFF3.aAug05
Exon
Length: 48
Transcript: AFF3.aAug05
Length: 48
Transcript: AFF3.aAug05
Exon
Length: 81
Transcript: AFF3.aAug05
Length: 81
Transcript: AFF3.aAug05
Exon
Length: 37
Transcript: AFF3.aAug05
Length: 37
Transcript: AFF3.aAug05
Exon
Length: 52
Transcript: AFF3.aAug05
Length: 52
Transcript: AFF3.aAug05
Exon
Length: 52
Transcript: AFF3.aAug05
Length: 52
Transcript: AFF3.aAug05
Exon
Length: 41
Transcript: AFF3.aAug05
Length: 41
Transcript: AFF3.aAug05
Exon
Length: 187
Transcript: AFF3.aAug05
Length: 187
Transcript: AFF3.aAug05
Exon
Length: 1095
Transcript: AFF3.aAug05
Length: 1095
Transcript: AFF3.aAug05
Exon
Length: 125
Transcript: AFF3.aAug05
Length: 125
Transcript: AFF3.aAug05
Exon
Length: 202
Transcript: AFF3.aAug05
Length: 202
Transcript: AFF3.aAug05
Exon
Length: 125
Transcript: AFF3.aAug05
Length: 125
Transcript: AFF3.aAug05
Exon
Length: 64
Transcript: AFF3.aAug05
Length: 64
Transcript: AFF3.aAug05
Exon
Length: 137
Transcript: AFF3.aAug05
Length: 137
Transcript: AFF3.aAug05
Exon
Length: 72
Transcript: AFF3.aAug05
Length: 72
Transcript: AFF3.aAug05
Exon
Length: 94
Transcript: AFF3.aAug05
Length: 94
Transcript: AFF3.aAug05
Exon
Length: 50
Transcript: AFF3.aAug05
Length: 50
Transcript: AFF3.aAug05
Exon
Length: 224
Transcript: AFF3.aAug05
Length: 224
Transcript: AFF3.aAug05
Exon
Length: 5118
Transcript: AFF3.aAug05
Length: 5118
Transcript: AFF3.aAug05
Intron
Length: 36900
Transcript: AFF3.aAug05
Length: 36900
Transcript: AFF3.aAug05
Intron
Length: 985
Transcript: AFF3.aAug05
Length: 985
Transcript: AFF3.aAug05
Intron
Length: 95469
Transcript: AFF3.aAug05
Length: 95469
Transcript: AFF3.aAug05
Intron
Length: 1351
Transcript: AFF3.aAug05
Length: 1351
Transcript: AFF3.aAug05
Intron
Length: 130
Transcript: AFF3.aAug05
Length: 130
Transcript: AFF3.aAug05
Intron
Length: 169107
Transcript: AFF3.aAug05
Length: 169107
Transcript: AFF3.aAug05
Intron
Length: 85175
Transcript: AFF3.aAug05
Length: 85175
Transcript: AFF3.aAug05
Intron
Length: 8080
Transcript: AFF3.aAug05
Length: 8080
Transcript: AFF3.aAug05
Intron
Length: 16975
Transcript: AFF3.aAug05
Length: 16975
Transcript: AFF3.aAug05
Intron
Length: 54487
Transcript: AFF3.aAug05
Length: 54487
Transcript: AFF3.aAug05
Intron
Length: 22871
Transcript: AFF3.aAug05
Length: 22871
Transcript: AFF3.aAug05
Intron
Length: 48004
Transcript: AFF3.aAug05
Length: 48004
Transcript: AFF3.aAug05
Intron
Length: 7145
Transcript: AFF3.aAug05
Length: 7145
Transcript: AFF3.aAug05
Intron
Length: 5916
Transcript: AFF3.aAug05
Length: 5916
Transcript: AFF3.aAug05
Intron
Length: 4154
Transcript: AFF3.aAug05
Length: 4154
Transcript: AFF3.aAug05
Intron
Length: 4346
Transcript: AFF3.aAug05
Length: 4346
Transcript: AFF3.aAug05
Intron
Length: 9411
Transcript: AFF3.aAug05
Length: 9411
Transcript: AFF3.aAug05
Intron
Length: 3228
Transcript: AFF3.aAug05
Length: 3228
Transcript: AFF3.aAug05
Intron
Length: 5050
Transcript: AFF3.aAug05
Length: 5050
Transcript: AFF3.aAug05
Intron
Length: 1396
Transcript: AFF3.aAug05
Length: 1396
Transcript: AFF3.aAug05
Intron
Length: 4142
Transcript: AFF3.aAug05
Length: 4142
Transcript: AFF3.aAug05
Intron
Length: 148
Transcript: AFF3.aAug05
Length: 148
Transcript: AFF3.aAug05
Intron
Length: 2715
Transcript: AFF3.aAug05
Length: 2715
Transcript: AFF3.aAug05
Reaction
Expected peak: 92
Associated peak: 104,106,107,109
Repeated 4 time
Molarity: 24.40M
Forward: AFF3.F4
Reverse: AFF3.R4
Expected peak: 92
Associated peak: 104,106,107,109
Repeated 4 time
Molarity: 24.40M
Forward: AFF3.F4
Reverse: AFF3.R4
Reaction
Expected peak: 96
Associated peak: 108,109,110,111
Repeated 4 time
Molarity: 39.25M
Forward: AFF3.F2
Reverse: AFF3.R2
Expected peak: 96
Associated peak: 108,109,110,111
Repeated 4 time
Molarity: 39.25M
Forward: AFF3.F2
Reverse: AFF3.R2
Reaction
Expected peak: 103
Associated peak: 120,121
Repeated 4 time
Molarity: 33.65M
Forward: AFF3.F3
Reverse: AFF3.R3
Expected peak: 103
Associated peak: 120,121
Repeated 4 time
Molarity: 33.65M
Forward: AFF3.F3
Reverse: AFF3.R3
Reaction
Expected peak: 132
Associated peak: 140,141
Repeated 4 time
Molarity: 4.20M
Forward: AFF3.F1
Reverse: AFF3.R5
Expected peak: 132
Associated peak: 140,141
Repeated 4 time
Molarity: 4.20M
Forward: AFF3.F1
Reverse: AFF3.R5
Reaction
Expected peak: 168
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AFF3.F6
Reverse: AFF3.R7
Expected peak: 168
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AFF3.F6
Reverse: AFF3.R7
Reaction
Expected peak: 171
Associated peak: 179,180,182,183
Repeated 4 time
Molarity: 7.62M
Forward: AFF3.F5
Reverse: AFF3.R6
Expected peak: 171
Associated peak: 179,180,182,183
Repeated 4 time
Molarity: 7.62M
Forward: AFF3.F5
Reverse: AFF3.R6
Exon
Length: 89
Transcript: AFF3.bAug05
Length: 89
Transcript: AFF3.bAug05
Exon
Length: 80
Transcript: AFF3.bAug05
Length: 80
Transcript: AFF3.bAug05
Exon
Length: 117
Transcript: AFF3.bAug05
Length: 117
Transcript: AFF3.bAug05
Exon
Length: 75
Transcript: AFF3.bAug05
Length: 75
Transcript: AFF3.bAug05
Exon
Length: 121
Transcript: AFF3.bAug05
Length: 121
Transcript: AFF3.bAug05
Exon
Length: 313
Transcript: AFF3.bAug05
Length: 313
Transcript: AFF3.bAug05
Exon
Length: 386
Transcript: AFF3.bAug05
Length: 386
Transcript: AFF3.bAug05
Exon
Length: 48
Transcript: AFF3.bAug05
Length: 48
Transcript: AFF3.bAug05
Exon
Length: 81
Transcript: AFF3.bAug05
Length: 81
Transcript: AFF3.bAug05
Exon
Length: 37
Transcript: AFF3.bAug05
Length: 37
Transcript: AFF3.bAug05
Exon
Length: 52
Transcript: AFF3.bAug05
Length: 52
Transcript: AFF3.bAug05
Exon
Length: 52
Transcript: AFF3.bAug05
Length: 52
Transcript: AFF3.bAug05
Exon
Length: 41
Transcript: AFF3.bAug05
Length: 41
Transcript: AFF3.bAug05
Exon
Length: 187
Transcript: AFF3.bAug05
Length: 187
Transcript: AFF3.bAug05
Exon
Length: 1095
Transcript: AFF3.bAug05
Length: 1095
Transcript: AFF3.bAug05
Exon
Length: 125
Transcript: AFF3.bAug05
Length: 125
Transcript: AFF3.bAug05
Exon
Length: 15
Transcript: AFF3.bAug05
Length: 15
Transcript: AFF3.bAug05
Intron
Length: 456
Transcript: AFF3.bAug05
Length: 456
Transcript: AFF3.bAug05
Intron
Length: 985
Transcript: AFF3.bAug05
Length: 985
Transcript: AFF3.bAug05
Intron
Length: 92830
Transcript: AFF3.bAug05
Length: 92830
Transcript: AFF3.bAug05
Intron
Length: 2564
Transcript: AFF3.bAug05
Length: 2564
Transcript: AFF3.bAug05
Intron
Length: 1351
Transcript: AFF3.bAug05
Length: 1351
Transcript: AFF3.bAug05
Intron
Length: 130
Transcript: AFF3.bAug05
Length: 130
Transcript: AFF3.bAug05
Intron
Length: 169107
Transcript: AFF3.bAug05
Length: 169107
Transcript: AFF3.bAug05
Intron
Length: 85175
Transcript: AFF3.bAug05
Length: 85175
Transcript: AFF3.bAug05
Intron
Length: 8080
Transcript: AFF3.bAug05
Length: 8080
Transcript: AFF3.bAug05
Intron
Length: 16975
Transcript: AFF3.bAug05
Length: 16975
Transcript: AFF3.bAug05
Intron
Length: 54487
Transcript: AFF3.bAug05
Length: 54487
Transcript: AFF3.bAug05
Intron
Length: 22871
Transcript: AFF3.bAug05
Length: 22871
Transcript: AFF3.bAug05
Intron
Length: 48004
Transcript: AFF3.bAug05
Length: 48004
Transcript: AFF3.bAug05
Intron
Length: 7145
Transcript: AFF3.bAug05
Length: 7145
Transcript: AFF3.bAug05
Intron
Length: 5916
Transcript: AFF3.bAug05
Length: 5916
Transcript: AFF3.bAug05
Intron
Length: 4154
Transcript: AFF3.bAug05
Length: 4154
Transcript: AFF3.bAug05
Reaction
Expected peak: 171
Associated peak: 184,185
Repeated 4 time
Molarity: 2.65M
Forward: AFF3.F2
Reverse: AFF3.R2
Expected peak: 171
Associated peak: 184,185
Repeated 4 time
Molarity: 2.65M
Forward: AFF3.F2
Reverse: AFF3.R2
Reaction
Expected peak: 178
Associated peak: 194
Repeated 4 time
Molarity: 4.58M
Forward: AFF3.F3
Reverse: AFF3.R3
Expected peak: 178
Associated peak: 194
Repeated 4 time
Molarity: 4.58M
Forward: AFF3.F3
Reverse: AFF3.R3
Exon
Length: 28
Transcript: AFF3.cAug05
Length: 28
Transcript: AFF3.cAug05
Exon
Length: 117
Transcript: AFF3.cAug05
Length: 117
Transcript: AFF3.cAug05
Exon
Length: 121
Transcript: AFF3.cAug05
Length: 121
Transcript: AFF3.cAug05
Exon
Length: 313
Transcript: AFF3.cAug05
Length: 313
Transcript: AFF3.cAug05
Exon
Length: 386
Transcript: AFF3.cAug05
Length: 386
Transcript: AFF3.cAug05
Exon
Length: 557
Transcript: AFF3.cAug05
Length: 557
Transcript: AFF3.cAug05
Intron
Length: 149
Transcript: AFF3.cAug05
Length: 149
Transcript: AFF3.cAug05
Intron
Length: 95469
Transcript: AFF3.cAug05
Length: 95469
Transcript: AFF3.cAug05
Intron
Length: 1351
Transcript: AFF3.cAug05
Length: 1351
Transcript: AFF3.cAug05
Intron
Length: 130
Transcript: AFF3.cAug05
Length: 130
Transcript: AFF3.cAug05
Intron
Length: 169107
Transcript: AFF3.cAug05
Length: 169107
Transcript: AFF3.cAug05
Reaction
Expected peak: 96
Associated peak: 108,109,110,111
Repeated 4 time
Molarity: 39.25M
Forward: AFF3.F2
Reverse: AFF3.R2
Expected peak: 96
Associated peak: 108,109,110,111
Repeated 4 time
Molarity: 39.25M
Forward: AFF3.F2
Reverse: AFF3.R2
Reaction
Expected peak: 103
Associated peak: 120,121
Repeated 4 time
Molarity: 33.65M
Forward: AFF3.F3
Reverse: AFF3.R3
Expected peak: 103
Associated peak: 120,121
Repeated 4 time
Molarity: 33.65M
Forward: AFF3.F3
Reverse: AFF3.R3
Exon
Length: 804
Transcript: AFF3.dAug05
Length: 804
Transcript: AFF3.dAug05
Exon
Length: 1149
Transcript: AFF3.dAug05
Length: 1149
Transcript: AFF3.dAug05
Intron
Length: 130
Transcript: AFF3.dAug05
Length: 130
Transcript: AFF3.dAug05
Exon
Length: 392
Transcript: AFF3.eAug05
Length: 392
Transcript: AFF3.eAug05
Exon
Length: 372
Transcript: AFF3.eAug05
Length: 372
Transcript: AFF3.eAug05
Intron
Length: 5916
Transcript: AFF3.eAug05
Length: 5916
Transcript: AFF3.eAug05
Exon
Length: 23
Transcript: AFF3.fAug05
Length: 23
Transcript: AFF3.fAug05
Exon
Length: 83
Transcript: AFF3.fAug05
Length: 83
Transcript: AFF3.fAug05
Exon
Length: 80
Transcript: AFF3.fAug05
Length: 80
Transcript: AFF3.fAug05
Exon
Length: 117
Transcript: AFF3.fAug05
Length: 117
Transcript: AFF3.fAug05
Exon
Length: 121
Transcript: AFF3.fAug05
Length: 121
Transcript: AFF3.fAug05
Exon
Length: 266
Transcript: AFF3.fAug05
Length: 266
Transcript: AFF3.fAug05
Intron
Length: 13177
Transcript: AFF3.fAug05
Length: 13177
Transcript: AFF3.fAug05
Intron
Length: 23640
Transcript: AFF3.fAug05
Length: 23640
Transcript: AFF3.fAug05
Intron
Length: 985
Transcript: AFF3.fAug05
Length: 985
Transcript: AFF3.fAug05
Intron
Length: 95469
Transcript: AFF3.fAug05
Length: 95469
Transcript: AFF3.fAug05
Intron
Length: 1351
Transcript: AFF3.fAug05
Length: 1351
Transcript: AFF3.fAug05
Reaction
Expected peak: 96
Associated peak: 108,109,110,111
Repeated 4 time
Molarity: 39.25M
Forward: AFF3.F2
Reverse: AFF3.R2
Expected peak: 96
Associated peak: 108,109,110,111
Repeated 4 time
Molarity: 39.25M
Forward: AFF3.F2
Reverse: AFF3.R2
Reaction
Expected peak: 103
Associated peak: 120,121
Repeated 4 time
Molarity: 33.65M
Forward: AFF3.F3
Reverse: AFF3.R3
Expected peak: 103
Associated peak: 120,121
Repeated 4 time
Molarity: 33.65M
Forward: AFF3.F3
Reverse: AFF3.R3
Reaction
Expected peak: 175
Associated peak: 209
Repeated 4 time
Molarity: 0.35M
Forward: AFF3.F4
Reverse: AFF3.R4
Expected peak: 175
Associated peak: 209
Repeated 4 time
Molarity: 0.35M
Forward: AFF3.F4
Reverse: AFF3.R4
Reaction
Expected peak: 215
Associated peak: 227,228
Repeated 4 time
Molarity: 4.28M
Forward: AFF3.F1
Reverse: AFF3.R5
Expected peak: 215
Associated peak: 227,228
Repeated 4 time
Molarity: 4.28M
Forward: AFF3.F1
Reverse: AFF3.R5
Exon
Length: 125
Transcript: AFF3.gAug05
Length: 125
Transcript: AFF3.gAug05
Exon
Length: 64
Transcript: AFF3.gAug05
Length: 64
Transcript: AFF3.gAug05
Exon
Length: 137
Transcript: AFF3.gAug05
Length: 137
Transcript: AFF3.gAug05
Exon
Length: 72
Transcript: AFF3.gAug05
Length: 72
Transcript: AFF3.gAug05
Exon
Length: 94
Transcript: AFF3.gAug05
Length: 94
Transcript: AFF3.gAug05
Exon
Length: 50
Transcript: AFF3.gAug05
Length: 50
Transcript: AFF3.gAug05
Exon
Length: 94
Transcript: AFF3.gAug05
Length: 94
Transcript: AFF3.gAug05
Intron
Length: 9411
Transcript: AFF3.gAug05
Length: 9411
Transcript: AFF3.gAug05
Intron
Length: 3228
Transcript: AFF3.gAug05
Length: 3228
Transcript: AFF3.gAug05
Intron
Length: 5050
Transcript: AFF3.gAug05
Length: 5050
Transcript: AFF3.gAug05
Intron
Length: 1396
Transcript: AFF3.gAug05
Length: 1396
Transcript: AFF3.gAug05
Intron
Length: 4142
Transcript: AFF3.gAug05
Length: 4142
Transcript: AFF3.gAug05
Intron
Length: 196
Transcript: AFF3.gAug05
Length: 196
Transcript: AFF3.gAug05
Reaction
Expected peak: 120
Associated peak: 132
Repeated 4 time
Molarity: 21.10M
Forward: AFF3.F6
Reverse: AFF3.R7
Expected peak: 120
Associated peak: 132
Repeated 4 time
Molarity: 21.10M
Forward: AFF3.F6
Reverse: AFF3.R7
Reaction
Expected peak: 123
Associated peak: 131,132,133,136
Repeated 4 time
Molarity: 10.45M
Forward: AFF3.F5
Reverse: AFF3.R6
Expected peak: 123
Associated peak: 131,132,133,136
Repeated 4 time
Molarity: 10.45M
Forward: AFF3.F5
Reverse: AFF3.R6
Exon
Length: 29
Transcript: AFF3.hAug05
Length: 29
Transcript: AFF3.hAug05
Exon
Length: 112
Transcript: AFF3.hAug05
Length: 112
Transcript: AFF3.hAug05
Exon
Length: 83
Transcript: AFF3.hAug05
Length: 83
Transcript: AFF3.hAug05
Exon
Length: 139
Transcript: AFF3.hAug05
Length: 139
Transcript: AFF3.hAug05
Exon
Length: 489
Transcript: AFF3.hAug05
Length: 489
Transcript: AFF3.hAug05
Intron
Length: 115
Transcript: AFF3.hAug05
Length: 115
Transcript: AFF3.hAug05
Intron
Length: 13177
Transcript: AFF3.hAug05
Length: 13177
Transcript: AFF3.hAug05
Intron
Length: 16699
Transcript: AFF3.hAug05
Length: 16699
Transcript: AFF3.hAug05
Intron
Length: 2052
Transcript: AFF3.hAug05
Length: 2052
Transcript: AFF3.hAug05
Reaction
Expected peak: 332
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AFF3.F1
Reverse: AFF3.R1
Expected peak: 332
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AFF3.F1
Reverse: AFF3.R1
Exon
Length: 176
Transcript: AFF3.iAug05
Length: 176
Transcript: AFF3.iAug05
Exon
Length: 48
Transcript: AFF3.iAug05
Length: 48
Transcript: AFF3.iAug05
Exon
Length: 442
Transcript: AFF3.iAug05
Length: 442
Transcript: AFF3.iAug05
Intron
Length: 169107
Transcript: AFF3.iAug05
Length: 169107
Transcript: AFF3.iAug05
Intron
Length: 11540
Transcript: AFF3.iAug05
Length: 11540
Transcript: AFF3.iAug05
Exon
Length: 112
Transcript: AFF3.jAug05
Length: 112
Transcript: AFF3.jAug05
Exon
Length: 139
Transcript: AFF3.jAug05
Length: 139
Transcript: AFF3.jAug05
Exon
Length: 80
Transcript: AFF3.jAug05
Length: 80
Transcript: AFF3.jAug05
Exon
Length: 171
Transcript: AFF3.jAug05
Length: 171
Transcript: AFF3.jAug05
Intron
Length: 29959
Transcript: AFF3.jAug05
Length: 29959
Transcript: AFF3.jAug05
Intron
Length: 6802
Transcript: AFF3.jAug05
Length: 6802
Transcript: AFF3.jAug05
Intron
Length: 985
Transcript: AFF3.jAug05
Length: 985
Transcript: AFF3.jAug05
Reaction
Expected peak: 231
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AFF3.F4
Reverse: AFF3.R4
Expected peak: 231
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AFF3.F4
Reverse: AFF3.R4
Reaction
Expected peak: 249
Associated peak: 255,256
Repeated 4 time
Molarity: 0.48M
Forward: AFF3.F1
Reverse: AFF3.R1
Expected peak: 249
Associated peak: 255,256
Repeated 4 time
Molarity: 0.48M
Forward: AFF3.F1
Reverse: AFF3.R1
Reaction
Expected peak: 271
Associated peak: 271,272
Repeated 4 time
Molarity: 2.17M
Forward: AFF3.F1
Reverse: AFF3.R5
Expected peak: 271
Associated peak: 271,272
Repeated 4 time
Molarity: 2.17M
Forward: AFF3.F1
Reverse: AFF3.R5
Exon
Length: 177
Transcript: AFF3.shed1.aAug05
Length: 177
Transcript: AFF3.shed1.aAug05
Exon
Length: 788
Transcript: AFF3.shed2.aAug05
Length: 788
Transcript: AFF3.shed2.aAug05
Exon
Length: 518
Transcript: AFF3.shed3.aAug05
Length: 518
Transcript: AFF3.shed3.aAug05
Exon
Length: 746
Transcript: AFF3.shed4.aAug05
Length: 746
Transcript: AFF3.shed4.aAug05
AFF3.R3
GTGCCATCATCCTGTTGAGTT
GTGCCATCATCCTGTTGAGTT
AFF3.F4
AAAGGAACGGGAGCTGAGAG
AAAGGAACGGGAGCTGAGAG
AFF3.F2
CATGGACAGCTTCGACTTAGC
CATGGACAGCTTCGACTTAGC
AFF3.R4
GGGACAAACTGGCCTCTGG
GGGACAAACTGGCCTCTGG
AFF3.R2
CGTTCTTTCCTCCGTAATGC
CGTTCTTTCCTCCGTAATGC
AFF3.F5
AACTCATCTAAAGCCGCCCA
AACTCATCTAAAGCCGCCCA
AFF3.R7
ATCTGGTGGATGCGCTGT
ATCTGGTGGATGCGCTGT
AFF3.F1
AGTGCCATTCAGAAAGCTCG
AGTGCCATTCAGAAAGCTCG
AFF3.R1
CTGCTAGTTCTCAGGGAAGAGG
CTGCTAGTTCTCAGGGAAGAGG
AFF3.R5
GTCTGGAAAGGCAGGTGATC
GTCTGGAAAGGCAGGTGATC
AFF3.R6
CTGTGGGATGCTGACGATG
CTGTGGGATGCTGACGATG
AFF3.F6
CCAAGCCCCATCTCCGTG
CCAAGCCCCATCTCCGTG
AFF3.F3
AATGGGACCTCGAGTCACTG
AATGGGACCTCGAGTCACTG