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LGFUS Public Data
Identification of alternative splicing markers for breast cancer
1. Breast Discovery Screen
Transcript map
: AGTR1
Exon
Length: 250
Transcript: AGTR1.aAug05
Length: 250
Transcript: AGTR1.aAug05
Exon
Length: 58
Transcript: AGTR1.aAug05
Length: 58
Transcript: AGTR1.aAug05
Exon
Length: 2013
Transcript: AGTR1.aAug05
Length: 2013
Transcript: AGTR1.aAug05
Intron
Length: 32052
Transcript: AGTR1.aAug05
Length: 32052
Transcript: AGTR1.aAug05
Intron
Length: 10751
Transcript: AGTR1.aAug05
Length: 10751
Transcript: AGTR1.aAug05
Reaction
Expected peak: 102
Associated peak: 111,113
Repeated 4 time
Molarity: 4.97M
Forward: AGTR1.F6
Reverse: AGTR1.R5
Expected peak: 102
Associated peak: 111,113
Repeated 4 time
Molarity: 4.97M
Forward: AGTR1.F6
Reverse: AGTR1.R5
Reaction
Expected peak: 135
Associated peak: 148,150,152,153
Repeated 4 time
Molarity: 12.35M
Forward: AGTR1.F5
Reverse: AGTR1.R2
Expected peak: 135
Associated peak: 148,150,152,153
Repeated 4 time
Molarity: 12.35M
Forward: AGTR1.F5
Reverse: AGTR1.R2
Reaction
Expected peak: 237
Associated peak: 235,236
Repeated 4 time
Molarity: 2.35M
Forward: AGTR1.F2
Reverse: AGTR1.R6
Expected peak: 237
Associated peak: 235,236
Repeated 4 time
Molarity: 2.35M
Forward: AGTR1.F2
Reverse: AGTR1.R6
Reaction
Expected peak: 266
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F1
Reverse: AGTR1.R7
Expected peak: 266
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F1
Reverse: AGTR1.R7
Reaction
Expected peak: 332
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F1
Reverse: AGTR1.R1
Expected peak: 332
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F1
Reverse: AGTR1.R1
Reaction
Expected peak: 357
Associated peak: 360,366
Repeated 4 time
Molarity: 0.70M
Forward: AGTR1.F2
Reverse: AGTR1.R2
Expected peak: 357
Associated peak: 360,366
Repeated 4 time
Molarity: 0.70M
Forward: AGTR1.F2
Reverse: AGTR1.R2
Exon
Length: 233
Transcript: AGTR1.bAug05
Length: 233
Transcript: AGTR1.bAug05
Exon
Length: 2013
Transcript: AGTR1.bAug05
Length: 2013
Transcript: AGTR1.bAug05
Intron
Length: 42839
Transcript: AGTR1.bAug05
Length: 42839
Transcript: AGTR1.bAug05
Reaction
Expected peak: 321
Associated peak: 360,366
Repeated 4 time
Molarity: 0.70M
Forward: AGTR1.F2
Reverse: AGTR1.R2
Expected peak: 321
Associated peak: 360,366
Repeated 4 time
Molarity: 0.70M
Forward: AGTR1.F2
Reverse: AGTR1.R2
Exon
Length: 250
Transcript: AGTR1.cAug05
Length: 250
Transcript: AGTR1.cAug05
Exon
Length: 84
Transcript: AGTR1.cAug05
Length: 84
Transcript: AGTR1.cAug05
Exon
Length: 58
Transcript: AGTR1.cAug05
Length: 58
Transcript: AGTR1.cAug05
Exon
Length: 2013
Transcript: AGTR1.cAug05
Length: 2013
Transcript: AGTR1.cAug05
Intron
Length: 9816
Transcript: AGTR1.cAug05
Length: 9816
Transcript: AGTR1.cAug05
Intron
Length: 22152
Transcript: AGTR1.cAug05
Length: 22152
Transcript: AGTR1.cAug05
Intron
Length: 10751
Transcript: AGTR1.cAug05
Length: 10751
Transcript: AGTR1.cAug05
Reaction
Expected peak: 102
Associated peak: 111,113
Repeated 4 time
Molarity: 4.97M
Forward: AGTR1.F6
Reverse: AGTR1.R5
Expected peak: 102
Associated peak: 111,113
Repeated 4 time
Molarity: 4.97M
Forward: AGTR1.F6
Reverse: AGTR1.R5
Reaction
Expected peak: 135
Associated peak: 148,150,152,153
Repeated 4 time
Molarity: 12.35M
Forward: AGTR1.F5
Reverse: AGTR1.R2
Expected peak: 135
Associated peak: 148,150,152,153
Repeated 4 time
Molarity: 12.35M
Forward: AGTR1.F5
Reverse: AGTR1.R2
Reaction
Expected peak: 160
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F4
Reverse: AGTR1.R1
Expected peak: 160
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F4
Reverse: AGTR1.R1
Reaction
Expected peak: 208
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F3
Reverse: AGTR1.R2
Expected peak: 208
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F3
Reverse: AGTR1.R2
Reaction
Expected peak: 321
Associated peak: 358,363
Repeated 4 time
Molarity: 0.38M
Forward: AGTR1.F2
Reverse: AGTR1.R6
Expected peak: 321
Associated peak: 358,363
Repeated 4 time
Molarity: 0.38M
Forward: AGTR1.F2
Reverse: AGTR1.R6
Reaction
Expected peak: 350
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F1
Reverse: AGTR1.R7
Expected peak: 350
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F1
Reverse: AGTR1.R7
Reaction
Expected peak: 416
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F1
Reverse: AGTR1.R1
Expected peak: 416
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F1
Reverse: AGTR1.R1
Reaction
Expected peak: 441
Associated peak: 422
Repeated 4 time
Molarity: 0.15M
Forward: AGTR1.F2
Reverse: AGTR1.R2
Expected peak: 441
Associated peak: 422
Repeated 4 time
Molarity: 0.15M
Forward: AGTR1.F2
Reverse: AGTR1.R2
Exon
Length: 410
Transcript: AGTR1.dAug05
Length: 410
Transcript: AGTR1.dAug05
Exon
Length: 1259
Transcript: AGTR1.dAug05
Length: 1259
Transcript: AGTR1.dAug05
Intron
Length: 10479
Transcript: AGTR1.dAug05
Length: 10479
Transcript: AGTR1.dAug05
Reaction
Expected peak: 163
Associated peak: 179,182
Repeated 4 time
Molarity: 1.65M
Forward: AGTR1.F8
Reverse: AGTR1.R2
Expected peak: 163
Associated peak: 179,182
Repeated 4 time
Molarity: 1.65M
Forward: AGTR1.F8
Reverse: AGTR1.R2
Reaction
Expected peak: 193
Associated peak: 215,217
Repeated 4 time
Molarity: 1.12M
Forward: AGTR1.F7
Reverse: AGTR1.R1
Expected peak: 193
Associated peak: 215,217
Repeated 4 time
Molarity: 1.12M
Forward: AGTR1.F7
Reverse: AGTR1.R1
Reaction
Expected peak: 374
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F6
Reverse: AGTR1.R5
Expected peak: 374
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F6
Reverse: AGTR1.R5
Reaction
Expected peak: 407
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F5
Reverse: AGTR1.R2
Expected peak: 407
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F5
Reverse: AGTR1.R2
Exon
Length: 114
Transcript: AGTR1.eAug05
Length: 114
Transcript: AGTR1.eAug05
Exon
Length: 172
Transcript: AGTR1.eAug05
Length: 172
Transcript: AGTR1.eAug05
Exon
Length: 1259
Transcript: AGTR1.eAug05
Length: 1259
Transcript: AGTR1.eAug05
Intron
Length: 100
Transcript: AGTR1.eAug05
Length: 100
Transcript: AGTR1.eAug05
Intron
Length: 10479
Transcript: AGTR1.eAug05
Length: 10479
Transcript: AGTR1.eAug05
Reaction
Expected peak: 163
Associated peak: 179,182
Repeated 4 time
Molarity: 1.65M
Forward: AGTR1.F8
Reverse: AGTR1.R2
Expected peak: 163
Associated peak: 179,182
Repeated 4 time
Molarity: 1.65M
Forward: AGTR1.F8
Reverse: AGTR1.R2
Reaction
Expected peak: 193
Associated peak: 215,217
Repeated 4 time
Molarity: 1.12M
Forward: AGTR1.F7
Reverse: AGTR1.R1
Expected peak: 193
Associated peak: 215,217
Repeated 4 time
Molarity: 1.12M
Forward: AGTR1.F7
Reverse: AGTR1.R1
Reaction
Expected peak: 274
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F6
Reverse: AGTR1.R5
Expected peak: 274
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F6
Reverse: AGTR1.R5
Reaction
Expected peak: 307
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F5
Reverse: AGTR1.R2
Expected peak: 307
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F5
Reverse: AGTR1.R2
Exon
Length: 1340
Transcript: AGTR1.fAug05
Length: 1340
Transcript: AGTR1.fAug05
Exon
Length: 2013
Transcript: AGTR1.fAug05
Length: 2013
Transcript: AGTR1.fAug05
Intron
Length: 1032
Transcript: AGTR1.fAug05
Length: 1032
Transcript: AGTR1.fAug05
Exon
Length: 410
Transcript: AGTR1.gAug05
Length: 410
Transcript: AGTR1.gAug05
Exon
Length: 126
Transcript: AGTR1.gAug05
Length: 126
Transcript: AGTR1.gAug05
Exon
Length: 1259
Transcript: AGTR1.gAug05
Length: 1259
Transcript: AGTR1.gAug05
Intron
Length: 681
Transcript: AGTR1.gAug05
Length: 681
Transcript: AGTR1.gAug05
Intron
Length: 9672
Transcript: AGTR1.gAug05
Length: 9672
Transcript: AGTR1.gAug05
Reaction
Expected peak: 289
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F8
Reverse: AGTR1.R2
Expected peak: 289
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F8
Reverse: AGTR1.R2
Reaction
Expected peak: 319
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F7
Reverse: AGTR1.R1
Expected peak: 319
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F7
Reverse: AGTR1.R1
Reaction
Expected peak: 500
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F6
Reverse: AGTR1.R5
Expected peak: 500
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F6
Reverse: AGTR1.R5
Reaction
Expected peak: 533
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F5
Reverse: AGTR1.R2
Expected peak: 533
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F5
Reverse: AGTR1.R2
Exon
Length: 250
Transcript: AGTR1.hAug05
Length: 250
Transcript: AGTR1.hAug05
Exon
Length: 84
Transcript: AGTR1.hAug05
Length: 84
Transcript: AGTR1.hAug05
Exon
Length: 2013
Transcript: AGTR1.hAug05
Length: 2013
Transcript: AGTR1.hAug05
Intron
Length: 9816
Transcript: AGTR1.hAug05
Length: 9816
Transcript: AGTR1.hAug05
Intron
Length: 32961
Transcript: AGTR1.hAug05
Length: 32961
Transcript: AGTR1.hAug05
Reaction
Expected peak: 102
Associated peak: 111,113,116,117
Repeated 4 time
Molarity: 21.35M
Forward: AGTR1.F4
Reverse: AGTR1.R1
Expected peak: 102
Associated peak: 111,113,116,117
Repeated 4 time
Molarity: 21.35M
Forward: AGTR1.F4
Reverse: AGTR1.R1
Reaction
Expected peak: 150
Associated peak: 165,167,169,170
Repeated 4 time
Molarity: 26.80M
Forward: AGTR1.F3
Reverse: AGTR1.R2
Expected peak: 150
Associated peak: 165,167,169,170
Repeated 4 time
Molarity: 26.80M
Forward: AGTR1.F3
Reverse: AGTR1.R2
Reaction
Expected peak: 358
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F1
Reverse: AGTR1.R1
Expected peak: 358
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F1
Reverse: AGTR1.R1
Reaction
Expected peak: 383
Associated peak: 360,366,422
Repeated 4 time
Molarity: 0.85M
Forward: AGTR1.F2
Reverse: AGTR1.R2
Expected peak: 383
Associated peak: 360,366,422
Repeated 4 time
Molarity: 0.85M
Forward: AGTR1.F2
Reverse: AGTR1.R2
Exon
Length: 344
Transcript: AGTR1.iAug05
Length: 344
Transcript: AGTR1.iAug05
Exon
Length: 2055
Transcript: AGTR1.iAug05
Length: 2055
Transcript: AGTR1.iAug05
Intron
Length: 42861
Transcript: AGTR1.iAug05
Length: 42861
Transcript: AGTR1.iAug05
Reaction
Expected peak: 274
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F1
Reverse: AGTR1.R1
Expected peak: 274
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F1
Reverse: AGTR1.R1
Reaction
Expected peak: 299
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F2
Reverse: AGTR1.R2
Expected peak: 299
Associated peak: None
Repeated 4 time
Molarity: 0.00M
Forward: AGTR1.F2
Reverse: AGTR1.R2
Exon
Length: 132
Transcript: AGTR1.jAug05
Length: 132
Transcript: AGTR1.jAug05
Exon
Length: 84
Transcript: AGTR1.jAug05
Length: 84
Transcript: AGTR1.jAug05
Exon
Length: 58
Transcript: AGTR1.jAug05
Length: 58
Transcript: AGTR1.jAug05
Exon
Length: 172
Transcript: AGTR1.jAug05
Length: 172
Transcript: AGTR1.jAug05
Exon
Length: 307
Transcript: AGTR1.jAug05
Length: 307
Transcript: AGTR1.jAug05
Intron
Length: 9637
Transcript: AGTR1.jAug05
Length: 9637
Transcript: AGTR1.jAug05
Intron
Length: 22152
Transcript: AGTR1.jAug05
Length: 22152
Transcript: AGTR1.jAug05
Intron
Length: 100
Transcript: AGTR1.jAug05
Length: 100
Transcript: AGTR1.jAug05
Intron
Length: 681
Transcript: AGTR1.jAug05
Length: 681
Transcript: AGTR1.jAug05
Exon
Length: 651
Transcript: AGTR1.shed1.aAug05
Length: 651
Transcript: AGTR1.shed1.aAug05
AGTR1.F7
TCCTGAGAAGGTATGAAGGTGG
TCCTGAGAAGGTATGAAGGTGG
AGTR1.R1
GGGTCGAATTTGTTGCAAAC
GGGTCGAATTTGTTGCAAAC
AGTR1.R2
CCAGCTTTGGGACAATCATC
CCAGCTTTGGGACAATCATC
AGTR1.R5
AGAATCATTTTGATCACCTGGG
AGAATCATTTTGATCACCTGGG
AGTR1.R7
CAGTTGACTTGTGATTCATTTTCTTC
CAGTTGACTTGTGATTCATTTTCTTC
AGTR1.F4
TGATCTAAAATGGCTGGGTTTT
TGATCTAAAATGGCTGGGTTTT
AGTR1.R6
AGCTGTGGAGCCTTTGGACT
AGCTGTGGAGCCTTTGGACT
AGTR1.F5
AAAGGCTCCACAGCTCAGAG
AAAGGCTCCACAGCTCAGAG
AGTR1.F8
GCACACTTTACGCCAGTCCT
GCACACTTTACGCCAGTCCT
AGTR1.F6
GAATCACAAGTCAACTGACAGTCC
GAATCACAAGTCAACTGACAGTCC
AGTR1.F1
CTCCTCGCCAATGATTCCAG
CTCCTCGCCAATGATTCCAG
AGTR1.F2
AGTGACAGGACGTCTGGACC
AGTGACAGGACGTCTGGACC
AGTR1.F3
AATAACTCACTGATGCCATCCC
AATAACTCACTGATGCCATCCC